Wall clock time and date at job start Wed Apr 1 2020 05:25:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47127 * 2 1 4 4 C 1.53000 * 109.47355 * 240.00001 * 2 1 3 5 5 C 1.52995 * 109.47054 * 174.99802 * 4 2 1 6 6 S 1.81409 * 109.47125 * 180.02562 * 5 4 2 7 7 C 1.81393 * 101.92171 * 179.97438 * 6 5 4 8 8 O 1.42099 * 108.57826 * 294.48790 * 6 5 4 9 9 O 1.42102 * 108.57664 * 65.51157 * 6 5 4 10 10 N 1.46504 * 109.47383 * 119.99719 * 2 1 3 11 11 C 1.34776 * 120.00057 * 275.00462 * 10 2 1 12 12 O 1.21582 * 119.99827 * 4.96546 * 11 10 2 13 13 N 1.34775 * 119.99758 * 184.96949 * 11 10 2 14 14 C 1.47085 * 120.88220 * 354.79912 * 13 11 10 15 15 C 1.53240 * 108.51807 * 231.16207 * 14 13 11 16 16 N 1.46893 * 109.34110 * 306.17179 * 15 14 13 17 17 C 1.46904 * 111.00050 * 187.25679 * 16 15 14 18 18 C 1.50700 * 109.47522 * 170.00099 * 17 16 15 19 19 H 1.07997 * 119.99797 * 359.97438 * 18 17 16 20 20 C 1.37873 * 120.00016 * 179.97438 * 18 17 16 21 21 N 1.31519 * 120.00009 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 120.00187 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.47205 * 90.00057 * 22 20 18 24 24 H 1.48504 * 109.46990 * 209.99806 * 22 20 18 25 25 H 1.48500 * 109.46884 * 329.99981 * 22 20 18 26 26 C 1.46897 * 111.27283 * 63.10860 * 16 15 14 27 27 C 1.47084 * 120.87908 * 174.77500 * 13 11 10 28 28 H 1.08992 * 109.47352 * 60.00485 * 1 2 3 29 29 H 1.09001 * 109.46624 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47147 * 299.99497 * 1 2 3 31 31 H 1.08999 * 109.47403 * 294.99998 * 4 2 1 32 32 H 1.09002 * 109.46990 * 54.99883 * 4 2 1 33 33 H 1.09002 * 109.47302 * 299.99577 * 5 4 2 34 34 H 1.08997 * 109.47579 * 60.00014 * 5 4 2 35 35 H 1.08996 * 109.47281 * 60.00130 * 7 6 5 36 36 H 1.09002 * 109.47075 * 180.02562 * 7 6 5 37 37 H 1.08994 * 109.47660 * 299.99554 * 7 6 5 38 38 H 0.96994 * 119.99690 * 95.00210 * 10 2 1 39 39 H 1.08996 * 109.62434 * 111.45401 * 14 13 11 40 40 H 1.08997 * 109.62703 * 350.86852 * 14 13 11 41 41 H 1.08999 * 109.49450 * 186.20765 * 15 14 13 42 42 H 1.09004 * 109.49371 * 66.13471 * 15 14 13 43 43 H 1.09000 * 109.46811 * 289.99908 * 17 16 15 44 44 H 1.09001 * 109.47246 * 49.99120 * 17 16 15 45 45 H 0.96995 * 120.00570 * 180.02562 * 21 20 18 46 46 H 1.08997 * 109.49471 * 56.85177 * 26 16 15 47 47 H 1.08997 * 109.49632 * 176.93996 * 26 16 15 48 48 H 1.08998 * 109.62553 * 9.13120 * 27 13 11 49 49 H 1.08998 * 109.62754 * 248.54628 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5648 -0.6132 -1.3136 6 16 4.1695 -1.4677 -2.7952 7 6 5.9613 -1.2150 -2.6684 8 8 3.8968 -2.8557 -2.6603 9 8 3.6953 -0.7757 -3.9422 10 7 2.0184 -0.6906 1.1962 11 6 2.1470 -0.0182 2.3572 12 8 1.7735 1.1362 2.4357 13 7 2.6899 -0.6254 3.4310 14 6 3.0439 -2.0525 3.3925 15 6 2.4225 -2.7411 4.6123 16 7 2.8317 -2.0323 5.8321 17 6 2.3997 -2.7591 7.0334 18 6 3.0402 -2.1434 8.2507 19 1 3.7024 -1.2971 8.1426 20 6 2.7809 -2.6606 9.5021 21 7 3.3404 -2.1236 10.5644 22 14 1.6351 -4.1240 9.6890 23 1 2.4204 -5.3815 9.6048 24 1 0.9532 -4.0536 11.0064 25 1 0.6209 -4.1001 8.6046 26 6 2.3269 -0.6528 5.8416 27 6 2.9445 0.1215 4.6722 28 1 -0.3633 0.5137 -0.8899 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.7517 -1.7715 -1.2056 32 1 1.6054 -0.2617 -2.1370 33 1 3.8531 0.4371 -1.3574 34 1 3.9995 -1.0726 -0.4259 35 1 6.3258 -1.6569 -1.7411 36 1 6.4559 -1.6890 -3.5162 37 1 6.1788 -0.1470 -2.6721 38 1 2.2491 -1.6316 1.1526 39 1 4.1279 -2.1617 3.4230 40 1 2.6532 -2.5022 2.4797 41 1 2.7649 -3.7749 4.6601 42 1 1.3360 -2.7211 4.5271 43 1 1.3151 -2.6991 7.1240 44 1 2.7003 -3.8038 6.9537 45 1 3.1583 -2.4875 11.4448 46 1 1.2418 -0.6618 5.7392 47 1 2.6002 -0.1719 6.7808 48 1 2.4881 1.1091 4.6053 49 1 4.0190 0.2212 4.8257 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601596993.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:21 Heat of formation + Delta-G solvation = -113.440994 kcal Electronic energy + Delta-G solvation = -29226.008504 eV Core-core repulsion = 25121.853410 eV Total energy + Delta-G solvation = -4104.155094 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.52536 -39.35792 -37.94684 -37.59546 -36.97673 -35.97943 -34.46702 -33.52622 -32.02752 -31.13531 -30.31207 -30.05920 -27.25838 -25.38710 -24.65642 -23.62673 -22.57796 -21.70966 -20.63131 -19.73724 -19.22120 -18.83977 -17.75095 -17.39806 -16.99894 -16.93705 -16.60578 -16.49197 -16.12483 -16.03273 -15.64025 -15.32517 -15.08577 -14.84362 -14.76047 -14.46797 -14.36033 -13.99112 -13.88828 -13.88483 -13.60502 -13.22342 -13.10285 -13.08322 -12.98395 -12.84064 -12.79577 -12.49786 -12.41094 -12.31896 -12.21435 -12.06541 -11.92995 -11.86720 -11.85330 -11.45163 -11.27038 -11.13252 -10.77364 -10.24539 -9.59921 -9.05157 -8.27712 -6.31128 -0.87948 1.35046 1.36911 1.46597 1.60249 1.91958 2.12394 2.34396 2.75372 2.88432 3.04648 3.15369 3.17216 3.60303 3.76744 3.89100 3.95988 4.06488 4.13953 4.14847 4.24997 4.26296 4.38517 4.41331 4.44098 4.54126 4.61717 4.71296 4.72405 4.79743 4.83727 4.86414 4.95166 4.97104 5.01139 5.03231 5.06679 5.13089 5.32000 5.44638 5.52579 5.58860 5.87158 6.03238 6.28019 6.61769 6.75547 6.96706 7.32475 7.54974 8.88554 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018294 B = 0.002142 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.223150 B =13068.404777 C =13606.537669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.169 3.831 3 H 0.081 0.919 4 C -0.123 4.123 5 C -0.605 4.605 6 S 2.429 3.571 7 C -0.646 4.646 8 O -0.983 6.983 9 O -0.985 6.985 10 N -0.729 5.729 11 C 0.706 3.294 12 O -0.632 6.632 13 N -0.628 5.628 14 C 0.122 3.878 15 C 0.033 3.967 16 N -0.536 5.536 17 C 0.172 3.828 18 C -0.515 4.515 19 H 0.042 0.958 20 C 0.008 3.992 21 N -0.947 5.947 22 Si 0.946 3.054 23 H -0.261 1.261 24 H -0.286 1.286 25 H -0.254 1.254 26 C 0.057 3.943 27 C 0.146 3.854 28 H 0.083 0.917 29 H 0.067 0.933 30 H 0.036 0.964 31 H 0.095 0.905 32 H 0.107 0.893 33 H 0.155 0.845 34 H 0.150 0.850 35 H 0.149 0.851 36 H 0.134 0.866 37 H 0.149 0.851 38 H 0.408 0.592 39 H 0.090 0.910 40 H 0.112 0.888 41 H 0.099 0.901 42 H 0.024 0.976 43 H -0.019 1.019 44 H 0.036 0.964 45 H 0.266 0.734 46 H 0.014 0.986 47 H 0.070 0.930 48 H 0.083 0.917 49 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.812 0.028 -29.911 29.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.063 3.937 3 H 0.099 0.901 4 C -0.162 4.162 5 C -0.736 4.736 6 S 2.617 3.383 7 C -0.798 4.798 8 O -0.980 6.980 9 O -0.983 6.983 10 N -0.388 5.388 11 C 0.408 3.592 12 O -0.513 6.513 13 N -0.365 5.365 14 C -0.001 4.001 15 C -0.096 4.096 16 N -0.261 5.261 17 C 0.045 3.955 18 C -0.554 4.554 19 H 0.060 0.940 20 C -0.190 4.190 21 N -0.588 5.588 22 Si 0.770 3.230 23 H -0.186 1.186 24 H -0.211 1.211 25 H -0.178 1.178 26 C -0.072 4.072 27 C 0.023 3.977 28 H 0.102 0.898 29 H 0.086 0.914 30 H 0.055 0.945 31 H 0.114 0.886 32 H 0.126 0.874 33 H 0.173 0.827 34 H 0.168 0.832 35 H 0.168 0.832 36 H 0.152 0.848 37 H 0.168 0.832 38 H 0.247 0.753 39 H 0.109 0.891 40 H 0.130 0.870 41 H 0.118 0.882 42 H 0.042 0.958 43 H -0.001 1.001 44 H 0.054 0.946 45 H 0.075 0.925 46 H 0.033 0.967 47 H 0.088 0.912 48 H 0.102 0.898 49 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.600 0.394 -30.386 30.431 hybrid contribution -0.784 -0.401 1.675 1.892 sum 0.816 -0.007 -28.711 28.723 Atomic orbital electron populations 1.22219 0.95200 1.02777 1.02340 1.20772 0.93901 0.96798 0.82231 0.90125 1.21720 0.91831 1.03634 0.98986 1.30302 1.05762 1.16571 1.20916 1.07283 0.79555 0.74702 0.76810 1.30148 1.22426 1.13845 1.13358 1.93556 1.84773 1.32462 1.87213 1.93550 1.80374 1.76048 1.48284 1.45303 1.71343 1.14133 1.08034 1.15958 0.78080 0.84236 0.80956 1.90875 1.57418 1.18709 1.84342 1.47405 1.65279 1.11399 1.12416 1.21914 1.01596 0.78709 0.97861 1.22620 0.97489 0.99254 0.90222 1.61811 1.60021 1.02023 1.02201 1.19938 0.92712 0.94534 0.88303 1.21253 1.27539 1.15856 0.90722 0.94017 1.25832 0.97579 1.00148 0.95410 1.70045 1.46008 1.43580 0.99145 0.85731 0.79612 0.79798 0.77855 1.18625 1.21139 1.17832 1.22256 0.95686 0.90445 0.98845 1.21424 1.00631 0.94726 0.80963 0.89806 0.91439 0.94458 0.88606 0.87428 0.82661 0.83211 0.83217 0.84764 0.83216 0.75348 0.89136 0.86990 0.88249 0.95802 1.00100 0.94554 0.92477 0.96735 0.91159 0.89849 0.90530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.55 9.48 71.98 0.68 -1.87 16 2 C 0.17 2.39 2.54 44.99 0.11 2.51 16 3 H 0.08 1.38 7.65 -2.39 -0.02 1.36 16 4 C -0.12 -1.04 4.76 30.59 0.15 -0.89 16 5 C -0.61 -2.87 5.69 71.98 0.41 -2.46 16 6 S 2.43 19.69 5.36 -56.49 -0.30 19.39 16 7 C -0.65 -0.96 10.62 113.37 1.20 0.25 16 8 O -0.98 -16.13 18.10 -127.37 -2.31 -18.43 16 9 O -0.99 -16.35 18.10 -127.37 -2.30 -18.65 16 10 N -0.73 -11.92 4.44 -457.82 -2.03 -13.95 16 11 C 0.71 18.20 8.27 179.06 1.48 19.68 16 12 O -0.63 -21.60 15.47 -3.97 -0.06 -21.66 16 13 N -0.63 -16.15 3.01 -835.92 -2.52 -18.67 16 14 C 0.12 2.43 6.54 86.35 0.56 2.99 16 15 C 0.03 0.91 5.62 86.38 0.49 1.39 16 16 N -0.54 -20.43 4.62 -899.82 -4.16 -24.58 16 17 C 0.17 7.87 3.79 85.56 0.32 8.19 16 18 C -0.52 -28.87 8.96 25.60 0.23 -28.64 16 19 H 0.04 2.60 7.37 -2.91 -0.02 2.58 16 20 C 0.01 0.44 5.47 84.65 0.46 0.90 16 21 N -0.95 -58.31 13.96 21.45 0.30 -58.01 16 22 Si 0.95 43.07 27.47 68.60 1.88 44.95 16 23 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 24 H -0.29 -12.90 7.11 99.48 0.71 -12.20 16 25 H -0.25 -10.88 6.54 99.48 0.65 -10.23 16 26 C 0.06 2.15 5.46 86.39 0.47 2.62 16 27 C 0.15 4.56 6.61 86.35 0.57 5.13 16 28 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.04 0.81 8.10 -2.39 -0.02 0.79 16 31 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.16 0.20 8.14 -2.39 -0.02 0.18 16 34 H 0.15 0.27 7.75 -2.39 -0.02 0.25 16 35 H 0.15 -0.28 8.14 -2.39 -0.02 -0.30 16 36 H 0.13 0.19 8.14 -2.39 -0.02 0.17 16 37 H 0.15 -0.32 8.14 -2.39 -0.02 -0.34 16 38 H 0.41 4.39 6.14 -92.71 -0.57 3.82 16 39 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.11 1.32 5.74 -2.39 -0.01 1.30 16 41 H 0.10 2.40 7.99 -2.39 -0.02 2.38 16 42 H 0.02 0.68 8.14 -2.39 -0.02 0.67 16 43 H -0.02 -0.88 7.18 -2.39 -0.02 -0.89 16 44 H 0.04 1.59 7.40 -2.39 -0.02 1.57 16 45 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 46 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 47 H 0.07 3.07 6.67 -2.39 -0.02 3.06 16 48 H 0.08 2.72 7.04 -2.39 -0.02 2.71 16 49 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 Total: -1.00 -87.25 400.13 -4.04 -91.28 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: 0.31 Total: 8.53 kcal Atomic # 6 Polarization: 2.65 SS G_CDS: 7.15 Total: 9.80 kcal Atomic # 7 Polarization: -106.80 SS G_CDS: -8.41 Total: -115.21 kcal Atomic # 8 Polarization: -54.07 SS G_CDS: -4.67 Total: -58.74 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 1.88 Total: 44.95 kcal Atomic # 16 Polarization: 19.69 SS G_CDS: -0.30 Total: 19.39 kcal Total: -87.25 -4.04 -91.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601596993.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.158 kcal (2) G-P(sol) polarization free energy of solvation -87.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds