Wall clock time and date at job start Wed Apr 1 2020 05:33:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47129 * 2 1 4 4 C 1.50696 * 109.47368 * 240.00263 * 2 1 3 5 5 H 1.08005 * 119.99540 * 245.59688 * 4 2 1 6 6 C 1.37872 * 120.00362 * 65.58932 * 4 2 1 7 7 N 1.31514 * 120.00382 * 202.17104 * 6 4 2 8 8 Si 1.86804 * 120.00029 * 22.44778 * 6 4 2 9 9 H 1.48496 * 109.47124 * 179.72376 * 8 6 4 10 10 H 1.48497 * 109.46611 * 299.72425 * 8 6 4 11 11 H 1.48500 * 109.46801 * 59.72424 * 8 6 4 12 12 N 1.46492 * 109.47178 * 119.99503 * 2 1 3 13 13 C 1.46500 * 119.99802 * 60.00338 * 12 2 1 14 14 S 1.65597 * 120.00343 * 240.00168 * 12 2 1 15 15 O 1.42107 * 106.40426 * 195.33542 * 14 12 2 16 16 O 1.42097 * 106.40296 * 328.25280 * 14 12 2 17 17 N 1.65598 * 107.21845 * 81.79545 * 14 12 2 18 18 C 1.46503 * 119.99949 * 63.59133 * 17 14 12 19 19 C 1.52996 * 109.47085 * 289.42792 * 18 17 14 20 20 C 1.53004 * 109.46984 * 49.42881 * 18 17 14 21 21 C 1.50696 * 109.47168 * 169.42542 * 18 17 14 22 22 O 1.21281 * 120.00314 * 138.01830 * 21 18 17 23 23 N 1.34779 * 120.00428 * 318.02399 * 21 18 17 24 24 C 1.47026 * 125.64280 * 353.77971 * 23 21 18 25 25 C 1.54317 * 107.27369 * 180.97171 * 24 23 21 26 26 C 1.55154 * 102.86325 * 22.52461 * 25 24 23 27 27 C 1.47420 * 125.65218 * 174.08955 * 23 21 18 28 28 H 1.08996 * 109.47457 * 295.49067 * 1 2 3 29 29 H 1.09005 * 109.47097 * 55.49480 * 1 2 3 30 30 H 1.08999 * 109.47092 * 175.49160 * 1 2 3 31 31 H 0.97007 * 119.99956 * 355.24556 * 7 6 4 32 32 H 1.09005 * 109.47216 * 88.59805 * 13 12 2 33 33 H 1.09002 * 109.47309 * 208.59305 * 13 12 2 34 34 H 1.09001 * 109.47472 * 328.59598 * 13 12 2 35 35 H 0.96997 * 120.00237 * 243.59551 * 17 14 12 36 36 H 1.08996 * 109.47343 * 63.29000 * 19 18 17 37 37 H 1.09007 * 109.47137 * 183.28575 * 19 18 17 38 38 H 1.09001 * 109.47399 * 303.28363 * 19 18 17 39 39 H 1.08999 * 109.46919 * 51.38557 * 20 18 17 40 40 H 1.09001 * 109.47041 * 171.38173 * 20 18 17 41 41 H 1.08997 * 109.47134 * 291.38021 * 20 18 17 42 42 H 1.08998 * 109.88359 * 300.51181 * 24 23 21 43 43 H 1.08999 * 109.88264 * 61.68484 * 24 23 21 44 44 H 1.09002 * 110.92342 * 264.11045 * 25 24 23 45 45 H 1.08999 * 110.59183 * 140.78811 * 25 24 23 46 46 H 1.08998 * 111.00500 * 206.23005 * 26 25 24 47 47 H 1.09004 * 111.00553 * 82.37948 * 26 25 24 48 48 H 1.08997 * 110.36601 * 274.67089 * 27 23 21 49 49 H 1.09003 * 110.36685 * 36.88430 * 27 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2304 5 1 2.5767 -1.6381 -1.1339 6 6 1.7970 -0.1759 -2.4794 7 7 1.8257 -0.9502 -3.5421 8 14 1.4449 1.6494 -2.6631 9 1 1.2346 1.9710 -4.0975 10 1 0.2237 1.9977 -1.8934 11 1 2.5966 2.4303 -2.1444 12 7 2.0183 -0.6905 1.1962 13 6 1.6644 -2.0930 1.4280 14 16 2.9703 0.1143 2.2862 15 8 3.5651 -0.8792 3.1100 16 8 3.7253 1.0585 1.5394 17 7 1.9619 0.9907 3.2646 18 6 0.9968 0.3029 4.1259 19 6 -0.1087 -0.3109 3.2645 20 6 1.7085 -0.8037 4.9069 21 6 0.3922 1.2897 5.0910 22 8 -0.7968 1.2559 5.3276 23 7 1.1727 2.2101 5.6912 24 6 2.6381 2.2832 5.5974 25 6 3.0937 3.4768 6.4630 26 6 1.9124 3.6565 7.4527 27 6 0.6990 3.3064 6.5556 28 1 -0.3634 0.4422 0.9276 29 1 -0.3633 0.5822 -0.8469 30 1 -0.3633 -1.0245 -0.0808 31 1 2.0800 -1.8824 -3.4562 32 1 2.4024 -2.7377 0.9505 33 1 1.6482 -2.2913 2.4998 34 1 0.6795 -2.2938 1.0064 35 1 2.0101 1.9595 3.2674 36 1 0.3205 -1.0668 2.6069 37 1 -0.8572 -0.7724 3.9086 38 1 -0.5770 0.4692 2.6643 39 1 2.5890 -0.3918 5.4000 40 1 1.0308 -1.2131 5.6561 41 1 2.0125 -1.5945 4.2212 42 1 3.0801 1.3604 5.9731 43 1 2.9357 2.4443 4.5613 44 1 3.2262 4.3711 5.8541 45 1 4.0117 3.2339 6.9982 46 1 1.8524 4.6857 7.8067 47 1 1.9938 2.9616 8.2886 48 1 0.4119 4.1678 5.9527 49 1 -0.1415 2.9732 7.1645 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000800939969.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:33:56 Heat of formation + Delta-G solvation = -108.251376 kcal Electronic energy + Delta-G solvation = -32067.917884 eV Core-core repulsion = 27963.987829 eV Total energy + Delta-G solvation = -4103.930055 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.66662 -38.85940 -38.42891 -38.23944 -37.30172 -36.94532 -34.64802 -32.58505 -31.87592 -31.46199 -30.03347 -28.42134 -27.30211 -26.58422 -25.79828 -23.19037 -22.36989 -22.05679 -20.68215 -20.19581 -19.57005 -18.95363 -18.79925 -18.21864 -17.34128 -16.99520 -16.71710 -16.04535 -15.83279 -15.57826 -15.50182 -15.14841 -14.91312 -14.54894 -14.42443 -14.28430 -14.24021 -14.03159 -13.87217 -13.63711 -13.52171 -13.43011 -13.36949 -13.21757 -12.99618 -12.96223 -12.67866 -12.47457 -12.44781 -12.22560 -12.20933 -12.11472 -12.10565 -11.82617 -11.61819 -11.58083 -11.19461 -10.94227 -10.72754 -10.38467 -9.83490 -9.75710 -8.69783 -6.31224 -0.47189 1.28536 1.43804 1.55363 1.69830 1.80889 1.92766 2.46744 2.50175 3.06705 3.15083 3.34566 3.61388 3.64447 3.74926 3.84620 3.89590 4.04625 4.11584 4.25377 4.41562 4.43786 4.53906 4.57549 4.63094 4.68732 4.71664 4.78915 4.82029 4.83928 4.90964 4.93185 4.96143 5.00676 5.09196 5.09993 5.21317 5.25063 5.32260 5.33903 5.38822 5.58380 5.68519 5.89338 6.01839 6.09304 6.31382 6.65612 6.92782 7.43074 8.65780 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016143 B = 0.003977 C = 0.003895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.118893 B = 7038.638105 C = 7187.120138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.253 3.747 3 H 0.035 0.965 4 C -0.608 4.608 5 H 0.031 0.969 6 C -0.010 4.010 7 N -0.930 5.930 8 Si 1.060 2.940 9 H -0.285 1.285 10 H -0.234 1.234 11 H -0.273 1.273 12 N -0.991 5.991 13 C 0.098 3.902 14 S 2.795 3.205 15 O -0.986 6.986 16 O -1.010 7.010 17 N -1.111 6.111 18 C 0.172 3.828 19 C -0.177 4.177 20 C -0.174 4.174 21 C 0.542 3.458 22 O -0.561 6.561 23 N -0.613 5.613 24 C 0.079 3.921 25 C -0.130 4.130 26 C -0.122 4.122 27 C 0.094 3.906 28 H 0.066 0.934 29 H 0.051 0.949 30 H 0.054 0.946 31 H 0.254 0.746 32 H 0.035 0.965 33 H 0.091 0.909 34 H 0.080 0.920 35 H 0.422 0.578 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.067 0.933 39 H 0.079 0.921 40 H 0.086 0.914 41 H 0.089 0.911 42 H 0.079 0.921 43 H 0.069 0.931 44 H 0.088 0.912 45 H 0.101 0.899 46 H 0.106 0.894 47 H 0.079 0.921 48 H 0.074 0.926 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.457 8.196 24.238 25.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.147 3.853 3 H 0.053 0.947 4 C -0.647 4.647 5 H 0.049 0.951 6 C -0.211 4.211 7 N -0.566 5.566 8 Si 0.882 3.118 9 H -0.211 1.211 10 H -0.158 1.158 11 H -0.199 1.199 12 N -0.832 5.832 13 C -0.047 4.047 14 S 2.804 3.196 15 O -0.969 6.969 16 O -0.994 6.994 17 N -0.876 5.876 18 C 0.081 3.919 19 C -0.236 4.236 20 C -0.232 4.232 21 C 0.328 3.672 22 O -0.439 6.439 23 N -0.347 5.347 24 C -0.044 4.044 25 C -0.168 4.168 26 C -0.160 4.160 27 C -0.028 4.028 28 H 0.085 0.915 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.054 0.946 33 H 0.110 0.890 34 H 0.099 0.901 35 H 0.260 0.740 36 H 0.106 0.894 37 H 0.105 0.895 38 H 0.086 0.914 39 H 0.098 0.902 40 H 0.105 0.895 41 H 0.108 0.892 42 H 0.097 0.903 43 H 0.087 0.913 44 H 0.107 0.893 45 H 0.119 0.881 46 H 0.125 0.875 47 H 0.098 0.902 48 H 0.092 0.908 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.581 9.042 23.303 25.046 hybrid contribution 0.341 -1.287 0.265 1.357 sum -1.240 7.755 23.568 24.842 Atomic orbital electron populations 1.22499 0.96290 1.01887 1.01092 1.18690 0.92413 0.91718 0.82442 0.94722 1.22316 1.40027 1.09493 0.92836 0.95113 1.26863 0.93783 1.08351 0.92076 1.70995 1.44619 1.07548 1.33395 0.83886 0.79260 0.71643 0.77005 1.21084 1.15757 1.19903 1.57430 1.70109 1.20857 1.34805 1.21458 1.01734 0.80305 1.01186 1.01456 0.73215 0.72727 0.72241 1.93562 1.75397 1.59935 1.68025 1.93576 1.69498 1.64516 1.71838 1.56252 1.54611 1.19623 1.57074 1.20381 0.89821 0.92138 0.89594 1.22733 0.98136 1.02404 1.00287 1.22628 1.01095 0.97637 1.01844 1.20127 0.85676 0.80617 0.80778 1.90700 1.16223 1.72190 1.64795 1.48574 1.08387 1.29110 1.48602 1.22589 0.79095 1.01243 1.01445 1.22731 0.99416 0.97165 0.97438 1.22771 0.92249 1.03898 0.97035 1.22479 0.98698 0.88868 0.92724 0.91491 0.93033 0.92681 0.93624 0.94613 0.89040 0.90099 0.74044 0.89408 0.89496 0.91385 0.90241 0.89475 0.89213 0.90290 0.91299 0.89341 0.88074 0.87537 0.90196 0.90771 0.91193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.04 8.46 71.98 0.61 -5.43 16 2 C 0.25 11.15 2.19 44.25 0.10 11.25 16 3 H 0.04 1.59 5.73 -2.38 -0.01 1.58 16 4 C -0.61 -33.18 8.63 25.60 0.22 -32.96 16 5 H 0.03 1.84 7.71 -2.91 -0.02 1.82 16 6 C -0.01 -0.59 5.29 84.65 0.45 -0.15 16 7 N -0.93 -56.94 13.70 21.45 0.29 -56.65 16 8 Si 1.06 48.99 26.54 68.60 1.82 50.81 16 9 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 10 H -0.23 -9.22 5.81 99.48 0.58 -8.65 16 11 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 12 N -0.99 -37.11 2.07 -520.46 -1.08 -38.19 16 13 C 0.10 3.19 7.45 127.77 0.95 4.14 16 14 S 2.79 96.09 5.84 -56.49 -0.33 95.76 16 15 O -0.99 -33.66 13.53 -128.00 -1.73 -35.39 16 16 O -1.01 -42.94 16.98 -128.00 -2.17 -45.12 16 17 N -1.11 -28.58 4.13 -155.19 -0.64 -29.22 16 18 C 0.17 4.13 0.76 2.86 0.00 4.13 16 19 C -0.18 -4.39 7.05 71.98 0.51 -3.89 16 20 C -0.17 -3.79 7.13 71.98 0.51 -3.27 16 21 C 0.54 13.40 6.60 87.66 0.58 13.98 16 22 O -0.56 -17.20 16.17 -3.03 -0.05 -17.25 16 23 N -0.61 -11.83 3.23 -811.81 -2.63 -14.46 16 24 C 0.08 1.22 5.66 86.73 0.49 1.71 16 25 C -0.13 -1.21 6.95 31.78 0.22 -0.99 16 26 C -0.12 -1.05 7.08 31.99 0.23 -0.83 16 27 C 0.09 1.42 6.94 86.86 0.60 2.02 16 28 H 0.07 2.10 5.22 -2.39 -0.01 2.09 16 29 H 0.05 2.04 5.30 -2.38 -0.01 2.02 16 30 H 0.05 2.06 6.86 -2.39 -0.02 2.05 16 31 H 0.25 15.77 8.73 -92.70 -0.81 14.96 16 32 H 0.04 1.27 8.04 -2.38 -0.02 1.25 16 33 H 0.09 2.35 4.95 -2.39 -0.01 2.34 16 34 H 0.08 2.51 6.37 -2.39 -0.02 2.50 16 35 H 0.42 9.58 6.44 -96.75 -0.62 8.96 16 36 H 0.09 2.19 2.93 -2.39 -0.01 2.19 16 37 H 0.09 2.02 7.79 -2.38 -0.02 2.00 16 38 H 0.07 1.79 6.16 -2.39 -0.01 1.77 16 39 H 0.08 1.64 6.13 -2.39 -0.01 1.62 16 40 H 0.09 1.63 8.12 -2.39 -0.02 1.61 16 41 H 0.09 2.12 4.38 -2.39 -0.01 2.11 16 42 H 0.08 1.20 6.41 -2.39 -0.02 1.18 16 43 H 0.07 1.15 5.52 -2.39 -0.01 1.13 16 44 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 45 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 46 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 47 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 48 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 49 H 0.07 1.20 7.98 -2.39 -0.02 1.18 16 Total: -1.00 -74.13 363.88 -0.84 -74.96 By element: Atomic # 1 Polarization: 24.81 SS G_CDS: 0.21 Total: 25.01 kcal Atomic # 6 Polarization: -15.75 SS G_CDS: 5.47 Total: -10.28 kcal Atomic # 7 Polarization: -134.46 SS G_CDS: -4.05 Total: -138.51 kcal Atomic # 8 Polarization: -93.81 SS G_CDS: -3.95 Total: -97.76 kcal Atomic # 14 Polarization: 48.99 SS G_CDS: 1.82 Total: 50.81 kcal Atomic # 16 Polarization: 96.09 SS G_CDS: -0.33 Total: 95.76 kcal Total: -74.13 -0.84 -74.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800939969.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.287 kcal (2) G-P(sol) polarization free energy of solvation -74.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds