Wall clock time and date at job start Wed Apr 1 2020 05:33:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08995 * 109.47291 * 2 1 4 4 C 1.50699 * 109.46893 * 119.99922 * 2 1 3 5 5 H 1.08009 * 120.00047 * 120.00391 * 4 2 1 6 6 C 1.37878 * 120.00016 * 300.27513 * 4 2 1 7 7 N 1.31522 * 119.99860 * 179.72381 * 6 4 2 8 8 Si 1.86797 * 120.00129 * 359.72402 * 6 4 2 9 9 H 1.48502 * 109.46993 * 90.00073 * 8 6 4 10 10 H 1.48499 * 109.47290 * 210.00135 * 8 6 4 11 11 H 1.48496 * 109.47205 * 330.00321 * 8 6 4 12 12 N 1.46494 * 109.47383 * 239.99957 * 2 1 3 13 13 C 1.46501 * 120.00076 * 293.29440 * 12 2 1 14 14 S 1.65602 * 120.00244 * 113.29230 * 12 2 1 15 15 O 1.42099 * 106.40201 * 216.90331 * 14 12 2 16 16 O 1.42095 * 106.40156 * 349.81961 * 14 12 2 17 17 N 1.65594 * 107.22049 * 103.36320 * 14 12 2 18 18 C 1.46501 * 119.99562 * 282.03109 * 17 14 12 19 19 C 1.53005 * 109.47517 * 55.41041 * 18 17 14 20 20 C 1.53001 * 109.46990 * 175.40707 * 18 17 14 21 21 C 1.50698 * 109.47480 * 295.40800 * 18 17 14 22 22 O 1.21280 * 120.00300 * 143.13866 * 21 18 17 23 23 N 1.34784 * 119.99746 * 323.14212 * 21 18 17 24 24 C 1.47024 * 125.64783 * 4.57819 * 23 21 18 25 25 C 1.54312 * 107.27526 * 180.96936 * 24 23 21 26 26 C 1.55160 * 102.86291 * 22.53191 * 25 24 23 27 27 C 1.47423 * 125.64688 * 184.88998 * 23 21 18 28 28 H 1.09001 * 109.47675 * 300.00013 * 1 2 3 29 29 H 1.09003 * 109.47262 * 60.00162 * 1 2 3 30 30 H 1.08995 * 109.47291 * 180.02562 * 1 2 3 31 31 H 0.97002 * 119.99771 * 179.97438 * 7 6 4 32 32 H 1.09005 * 109.47341 * 95.07639 * 13 12 2 33 33 H 1.09001 * 109.47506 * 215.08246 * 13 12 2 34 34 H 1.09003 * 109.46962 * 335.07597 * 13 12 2 35 35 H 0.96998 * 120.00260 * 102.02684 * 17 14 12 36 36 H 1.09003 * 109.46692 * 51.82664 * 19 18 17 37 37 H 1.09000 * 109.47391 * 171.83078 * 19 18 17 38 38 H 1.08998 * 109.46937 * 291.83436 * 19 18 17 39 39 H 1.09000 * 109.47039 * 60.00036 * 20 18 17 40 40 H 1.09004 * 109.47502 * 179.97438 * 20 18 17 41 41 H 1.09001 * 109.47129 * 300.00133 * 20 18 17 42 42 H 1.09003 * 109.88045 * 300.51995 * 24 23 21 43 43 H 1.08998 * 109.88039 * 61.67881 * 24 23 21 44 44 H 1.08999 * 110.92581 * 264.11361 * 25 24 23 45 45 H 1.08998 * 110.59064 * 140.78347 * 25 24 23 46 46 H 1.09002 * 111.00295 * 206.23175 * 26 25 24 47 47 H 1.08997 * 111.00863 * 82.37061 * 26 25 24 48 48 H 1.08991 * 110.36457 * 274.67311 * 27 23 21 49 49 H 1.09005 * 110.36470 * 36.88623 * 27 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6944 -0.2426 2.4827 7 7 2.1283 -0.8658 3.5566 8 14 0.6206 1.2761 2.6541 9 1 -0.8076 0.8708 2.6928 10 1 0.9672 1.9883 3.9102 11 1 0.8482 2.1767 1.4955 12 7 2.0183 -0.6906 -1.1961 13 6 1.7895 -2.1287 -1.3564 14 16 2.8290 0.1543 -2.3671 15 8 2.4281 -0.4004 -3.6124 16 8 2.6796 1.5303 -2.0452 17 7 4.4390 -0.1936 -2.1968 18 6 5.2201 0.4526 -1.1392 19 6 4.5546 0.1975 0.2147 20 6 6.6374 -0.1237 -1.1274 21 6 5.2832 1.9361 -1.3963 22 8 5.2462 2.7148 -0.4672 23 7 5.3808 2.3977 -2.6589 24 6 5.3399 1.5758 -3.8772 25 6 5.5126 2.5285 -5.0788 26 6 6.2154 3.7586 -4.4460 27 6 5.5527 3.8096 -3.0467 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8910 -0.5365 4.4376 32 1 0.8895 -2.2895 -1.9500 33 1 2.6438 -2.5784 -1.8625 34 1 1.6650 -2.5883 -0.3758 35 1 4.8649 -0.8252 -2.7973 36 1 4.3774 -0.8710 0.3368 37 1 5.2074 0.5511 1.0128 38 1 3.6050 0.7307 0.2590 39 1 7.1115 0.0580 -2.0919 40 1 7.2188 0.3574 -0.3408 41 1 6.5917 -1.1968 -0.9414 42 1 6.1503 0.8469 -3.8601 43 1 4.3800 1.0642 -3.9472 44 1 4.5452 2.8090 -5.4953 45 1 6.1447 2.0733 -5.8412 46 1 6.0017 4.6649 -5.0126 47 1 7.2899 3.5952 -4.3637 48 1 4.5851 4.3080 -3.1030 49 1 6.2017 4.3218 -2.3362 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000800939976.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:33:59 Heat of formation + Delta-G solvation = -79.022860 kcal Electronic energy + Delta-G solvation = -32935.196852 eV Core-core repulsion = 28832.534241 eV Total energy + Delta-G solvation = -4102.662612 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.28682 -37.62207 -36.84557 -36.50096 -35.99800 -35.44281 -32.52712 -31.45250 -30.48981 -30.03510 -29.04766 -27.17931 -25.62117 -25.12652 -24.47806 -21.79755 -21.12959 -20.94866 -19.64519 -18.68546 -17.55952 -17.16972 -17.12355 -16.59825 -16.25034 -15.65340 -15.34266 -14.82118 -14.51508 -14.05372 -13.77369 -13.67124 -13.46379 -13.26670 -13.15444 -12.84344 -12.77272 -12.43947 -12.35820 -12.13873 -12.08898 -12.03326 -11.84675 -11.68648 -11.66702 -11.59461 -11.49915 -11.36450 -11.29479 -11.17322 -10.92235 -10.90072 -10.55666 -10.47233 -10.14240 -9.96754 -9.55137 -9.33833 -8.98305 -8.63523 -8.46875 -8.14800 -6.15878 -4.15376 1.02601 2.84576 3.11204 3.25961 3.35110 3.40415 3.45003 3.90354 4.34101 4.36602 4.46757 4.70075 4.76846 4.80212 4.96966 5.09606 5.14747 5.23675 5.26111 5.34275 5.41914 5.52340 5.56718 5.68012 5.74787 5.79635 5.84540 5.88540 6.01988 6.04640 6.05111 6.14421 6.23754 6.38533 6.39959 6.47712 6.55741 6.62556 6.71546 6.85646 7.02540 7.22703 7.30588 7.36221 7.62581 7.68268 8.41234 8.44749 8.83461 9.45168 10.95548 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.014459 B = 0.005181 C = 0.004749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.047170 B = 5402.687414 C = 5894.266361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.233 3.767 3 H 0.064 0.936 4 C -0.522 4.522 5 H 0.088 0.912 6 C 0.080 3.920 7 N -0.890 5.890 8 Si 0.871 3.129 9 H -0.278 1.278 10 H -0.294 1.294 11 H -0.261 1.261 12 N -0.985 5.985 13 C 0.102 3.898 14 S 2.775 3.225 15 O -0.994 6.994 16 O -0.968 6.968 17 N -1.123 6.123 18 C 0.167 3.833 19 C -0.158 4.158 20 C -0.141 4.141 21 C 0.535 3.465 22 O -0.521 6.521 23 N -0.612 5.612 24 C 0.110 3.890 25 C -0.137 4.137 26 C -0.132 4.132 27 C 0.105 3.895 28 H 0.049 0.951 29 H 0.030 0.970 30 H 0.059 0.941 31 H 0.266 0.734 32 H 0.044 0.956 33 H 0.046 0.954 34 H 0.092 0.908 35 H 0.411 0.589 36 H 0.088 0.912 37 H 0.074 0.926 38 H 0.092 0.908 39 H 0.060 0.940 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.072 0.928 43 H 0.044 0.956 44 H 0.078 0.922 45 H 0.083 0.917 46 H 0.083 0.917 47 H 0.075 0.925 48 H 0.069 0.931 49 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.177 1.367 -15.444 18.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.129 3.871 3 H 0.081 0.919 4 C -0.560 4.560 5 H 0.106 0.894 6 C -0.123 4.123 7 N -0.527 5.527 8 Si 0.701 3.299 9 H -0.205 1.205 10 H -0.221 1.221 11 H -0.186 1.186 12 N -0.826 5.826 13 C -0.044 4.044 14 S 2.784 3.216 15 O -0.977 6.977 16 O -0.952 6.952 17 N -0.882 5.882 18 C 0.075 3.925 19 C -0.216 4.216 20 C -0.200 4.200 21 C 0.322 3.678 22 O -0.394 6.394 23 N -0.347 5.347 24 C -0.014 4.014 25 C -0.175 4.175 26 C -0.170 4.170 27 C -0.018 4.018 28 H 0.068 0.932 29 H 0.050 0.950 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.111 0.889 35 H 0.244 0.756 36 H 0.107 0.893 37 H 0.092 0.908 38 H 0.111 0.889 39 H 0.079 0.921 40 H 0.095 0.905 41 H 0.097 0.903 42 H 0.091 0.909 43 H 0.062 0.938 44 H 0.097 0.903 45 H 0.101 0.899 46 H 0.101 0.899 47 H 0.094 0.906 48 H 0.087 0.913 49 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 8.680 2.477 -15.158 17.642 hybrid contribution -0.442 0.117 0.196 0.497 sum 8.238 2.594 -14.962 17.276 Atomic orbital electron populations 1.22461 0.99080 1.01336 0.99086 1.19238 0.90593 0.93952 0.83330 0.91876 1.21099 1.32593 1.14411 0.87931 0.89449 1.24808 0.95436 0.96296 0.95792 1.69851 1.45014 1.39892 0.97963 0.87106 0.80707 0.84308 0.77819 1.20460 1.22112 1.18570 1.57460 1.70202 1.18095 1.36881 1.21282 0.99218 0.80513 1.03383 1.02173 0.72595 0.73829 0.73035 1.93579 1.81154 1.80560 1.42452 1.93632 1.85237 1.31640 1.84645 1.56488 1.29532 1.58585 1.43635 1.20514 0.94384 0.87642 0.89920 1.22658 1.02701 1.04841 0.91397 1.21973 0.92996 1.02369 1.02684 1.20582 0.75312 0.90904 0.81019 1.90700 1.48766 1.57799 1.42160 1.48306 1.73404 1.07827 1.05205 1.22091 1.00494 0.94261 0.84561 1.22717 1.01822 0.96053 0.96900 1.22786 1.00059 0.98603 0.95582 1.22201 1.00707 0.83463 0.95408 0.93230 0.95044 0.92232 0.92452 0.93763 0.93513 0.88929 0.75576 0.89322 0.90752 0.88924 0.92148 0.90477 0.90279 0.90931 0.93785 0.90323 0.89856 0.89864 0.90634 0.91312 0.90509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.49 8.76 37.15 0.33 -3.16 16 2 C 0.23 5.32 1.10 -69.09 -0.08 5.24 16 3 H 0.06 1.59 4.47 -51.93 -0.23 1.36 16 4 C -0.52 -12.96 5.79 -34.44 -0.20 -13.16 16 5 H 0.09 2.25 6.31 -52.48 -0.33 1.92 16 6 C 0.08 2.16 5.45 -17.82 -0.10 2.06 16 7 N -0.89 -25.27 13.96 55.43 0.77 -24.50 16 8 Si 0.87 21.58 24.37 -169.99 -4.14 17.44 16 9 H -0.28 -6.64 6.86 56.52 0.39 -6.26 16 10 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 11 H -0.26 -6.52 6.54 56.52 0.37 -6.15 16 12 N -0.98 -19.17 2.60 -115.86 -0.30 -19.47 16 13 C 0.10 1.69 9.55 59.85 0.57 2.27 16 14 S 2.77 51.62 3.91 -107.50 -0.42 51.20 16 15 O -0.99 -19.08 17.26 -57.18 -0.99 -20.06 16 16 O -0.97 -21.15 13.55 -57.18 -0.77 -21.93 16 17 N -1.12 -16.35 3.16 -0.40 0.00 -16.36 16 18 C 0.17 2.66 0.82 -132.97 -0.11 2.55 16 19 C -0.16 -3.06 5.64 37.16 0.21 -2.85 16 20 C -0.14 -1.65 8.56 37.16 0.32 -1.33 16 21 C 0.54 9.80 4.83 -10.98 -0.05 9.74 16 22 O -0.52 -11.54 16.51 5.56 0.09 -11.45 16 23 N -0.61 -9.37 3.00 -170.52 -0.51 -9.88 16 24 C 0.11 1.34 5.29 -3.07 -0.02 1.32 16 25 C -0.14 -1.28 6.95 -24.90 -0.17 -1.45 16 26 C -0.13 -1.18 7.08 -24.58 -0.17 -1.35 16 27 C 0.10 1.38 6.89 -2.53 -0.02 1.36 16 28 H 0.05 1.12 3.25 -51.93 -0.17 0.95 16 29 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 1.20 7.85 -51.93 -0.41 0.80 16 31 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 32 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.05 0.64 8.09 -51.93 -0.42 0.22 16 34 H 0.09 1.62 6.60 -51.93 -0.34 1.27 16 35 H 0.41 4.48 8.40 -34.47 -0.29 4.19 16 36 H 0.09 1.69 6.71 -51.93 -0.35 1.34 16 37 H 0.07 1.45 8.11 -51.93 -0.42 1.03 16 38 H 0.09 2.11 3.56 -51.93 -0.18 1.93 16 39 H 0.06 0.57 7.24 -51.93 -0.38 0.20 16 40 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.07 0.70 7.17 -51.93 -0.37 0.32 16 43 H 0.04 0.62 4.72 -51.85 -0.24 0.37 16 44 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 45 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 47 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 49 H 0.08 1.02 8.08 -51.93 -0.42 0.60 16 LS Contribution 367.70 15.07 5.54 5.54 Total: -1.00 -33.72 367.70 -7.77 -41.49 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: -7.54 Total: 6.72 kcal Atomic # 6 Polarization: 0.74 SS G_CDS: 0.51 Total: 1.25 kcal Atomic # 7 Polarization: -70.17 SS G_CDS: -0.04 Total: -70.21 kcal Atomic # 8 Polarization: -51.76 SS G_CDS: -1.67 Total: -53.43 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.14 Total: 17.44 kcal Atomic # 16 Polarization: 51.62 SS G_CDS: -0.42 Total: 51.20 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.72 -7.77 -41.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800939976.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.535 kcal (2) G-P(sol) polarization free energy of solvation -33.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds