Wall clock time and date at job start Wed Apr 1 2020 05:33:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09006 * 109.46742 * 2 1 4 4 C 1.50694 * 109.47078 * 240.00062 * 2 1 3 5 5 H 1.08002 * 120.00455 * 239.99812 * 4 2 1 6 6 C 1.37885 * 120.00198 * 59.99907 * 4 2 1 7 7 N 1.31511 * 119.99551 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00148 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47175 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47263 * 119.99616 * 8 6 4 11 11 H 1.48500 * 109.47218 * 239.99804 * 8 6 4 12 12 N 1.46497 * 109.47197 * 120.00035 * 2 1 3 13 13 C 1.46499 * 120.00088 * 59.99826 * 12 2 1 14 14 S 1.65601 * 119.99767 * 240.00121 * 12 2 1 15 15 O 1.42101 * 106.40453 * 336.46111 * 14 12 2 16 16 O 1.42103 * 106.40282 * 203.53820 * 14 12 2 17 17 N 1.65605 * 107.21815 * 90.00064 * 14 12 2 18 18 C 1.47520 * 120.11567 * 269.93384 * 17 14 12 19 19 C 1.52550 * 106.61306 * 130.04941 * 18 17 14 20 20 H 1.09003 * 110.42069 * 297.45888 * 19 18 17 21 21 C 1.53323 * 113.47867 * 171.91323 * 19 18 17 22 22 C 1.54946 * 104.25536 * 216.25182 * 21 19 18 23 23 C 1.55144 * 104.93777 * 2.38313 * 22 21 19 24 24 N 1.47161 * 103.59102 * 23.99181 * 23 22 21 25 25 C 1.45765 * 116.16539 * 197.70447 * 24 23 22 26 26 C 1.46854 * 120.22590 * 89.99959 * 17 14 12 27 27 H 1.09002 * 109.40186 * 346.89972 * 26 17 14 28 28 C 1.52999 * 109.40551 * 106.73546 * 26 17 14 29 29 O 1.42905 * 109.46728 * 65.16603 * 28 26 17 30 30 H 1.08994 * 109.47472 * 60.00455 * 1 2 3 31 31 H 1.09006 * 109.46742 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46928 * 299.99708 * 1 2 3 33 33 H 0.97003 * 119.99699 * 179.97438 * 7 6 4 34 34 H 1.08999 * 109.47445 * 270.00073 * 13 12 2 35 35 H 1.09001 * 109.46972 * 30.00862 * 13 12 2 36 36 H 1.09002 * 109.46938 * 150.00037 * 13 12 2 37 37 H 1.08992 * 110.04657 * 10.77152 * 18 17 14 38 38 H 1.09002 * 110.10663 * 249.35694 * 18 17 14 39 39 H 1.09001 * 110.47241 * 334.94837 * 21 19 18 40 40 H 1.09000 * 110.47468 * 97.56143 * 21 19 18 41 41 H 1.08997 * 110.34124 * 121.24628 * 22 21 19 42 42 H 1.08992 * 110.34999 * 243.51462 * 22 21 19 43 43 H 1.08998 * 110.60438 * 265.46392 * 23 22 21 44 44 H 1.09000 * 110.60062 * 142.51701 * 23 22 21 45 45 H 1.09010 * 109.79715 * 63.62073 * 25 24 23 46 46 H 1.09002 * 109.80227 * 302.76626 * 25 24 23 47 47 H 1.09000 * 109.47486 * 305.16541 * 28 26 17 48 48 H 1.09001 * 109.47362 * 185.15818 * 28 26 17 49 49 H 0.96696 * 114.00036 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1314 6 6 1.6993 -0.2393 -2.4828 7 7 0.9428 0.8296 -2.6034 8 14 2.3213 -1.1203 -4.0080 9 1 3.1464 -2.2870 -3.6038 10 1 1.1660 -1.5867 -4.8160 11 1 3.1465 -0.1873 -4.8166 12 7 2.0184 -0.6906 1.1961 13 6 1.6645 -2.0932 1.4280 14 16 2.9704 0.1143 2.2862 15 8 3.5794 1.1831 1.5748 16 8 3.7119 -0.8788 2.9815 17 7 1.9607 0.8091 3.3998 18 6 1.4429 2.1728 3.1801 19 6 -0.0667 2.1051 3.3889 20 1 -0.5231 1.4427 2.6533 21 6 -0.7454 3.4799 3.3914 22 6 -1.8691 3.3489 4.4501 23 6 -1.7117 1.9166 5.0251 24 7 -0.2995 1.5934 4.7665 25 6 0.0586 0.1817 4.8283 26 6 1.5772 0.0726 4.6110 27 1 1.8526 -0.9762 4.4995 28 6 2.3073 0.6643 5.8183 29 8 1.8598 2.0039 6.0360 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 0.7087 1.1613 -3.4844 34 1 0.7376 -2.1444 1.9993 35 1 1.5297 -2.5969 0.4708 36 1 2.4630 -2.5818 1.9864 37 1 1.6646 2.4974 2.1635 38 1 1.8880 2.8627 3.8971 39 1 -0.0360 4.2548 3.6821 40 1 -1.1688 3.6979 2.4109 41 1 -1.7358 4.0903 5.2378 42 1 -2.8465 3.4639 3.9816 43 1 -2.3666 1.2193 4.5025 44 1 -1.9172 1.9083 6.0955 45 1 -0.4667 -0.3669 4.0464 46 1 -0.2048 -0.2237 5.8052 47 1 3.3807 0.6661 5.6288 48 1 2.0953 0.0624 6.7020 49 1 2.2812 2.4421 6.7879 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000872618044.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:33:05 Heat of formation + Delta-G solvation = -117.139673 kcal Electronic energy + Delta-G solvation = -32433.390401 eV Core-core repulsion = 28329.074920 eV Total energy + Delta-G solvation = -4104.315481 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.94935 -38.48795 -37.90610 -37.81503 -36.91908 -35.96313 -34.54290 -33.59130 -31.13463 -30.91741 -29.60616 -27.28140 -27.02623 -26.31577 -25.21551 -22.73974 -22.63991 -21.84025 -20.71089 -19.68907 -18.96797 -18.65917 -18.22149 -17.72038 -17.32416 -16.78037 -16.52728 -16.27905 -16.03567 -15.52557 -15.30983 -15.15363 -14.96391 -14.58449 -14.45979 -14.12322 -13.84892 -13.73584 -13.54023 -13.43230 -13.31135 -13.18816 -13.10342 -13.04265 -12.91281 -12.74281 -12.65420 -12.37001 -12.30991 -12.16823 -12.05054 -11.98148 -11.90910 -11.86110 -11.59028 -11.34704 -11.17567 -10.61289 -10.52991 -10.05172 -9.65512 -9.07714 -8.13724 -6.27385 -0.40079 1.39575 1.42568 1.52971 1.95312 2.40081 2.51469 3.08509 3.14532 3.28848 3.53865 3.59967 3.78403 3.94525 3.99385 4.11808 4.20853 4.27016 4.37422 4.48906 4.50688 4.61846 4.63204 4.65501 4.70593 4.71576 4.75999 4.83731 4.89630 4.95279 4.98314 5.02879 5.10958 5.12556 5.15998 5.18598 5.22256 5.35068 5.38697 5.54733 5.58825 5.76721 5.86270 6.04392 6.12233 6.27394 6.39536 6.80056 7.21421 7.41448 8.90671 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.014666 B = 0.004497 C = 0.003873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.729088 B = 6224.288002 C = 7227.004659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.278 3.722 3 H 0.021 0.979 4 C -0.539 4.539 5 H 0.056 0.944 6 C 0.019 3.981 7 N -0.913 5.913 8 Si 0.955 3.045 9 H -0.270 1.270 10 H -0.274 1.274 11 H -0.284 1.284 12 N -0.998 5.998 13 C 0.094 3.906 14 S 2.783 3.217 15 O -1.015 7.015 16 O -1.005 7.005 17 N -0.992 5.992 18 C 0.148 3.852 19 C 0.052 3.948 20 H 0.037 0.963 21 C -0.114 4.114 22 C -0.109 4.109 23 C 0.042 3.958 24 N -0.487 5.487 25 C 0.058 3.942 26 C 0.148 3.852 27 H 0.106 0.894 28 C 0.080 3.920 29 O -0.542 6.542 30 H 0.066 0.934 31 H 0.038 0.962 32 H 0.029 0.971 33 H 0.265 0.735 34 H 0.063 0.937 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.058 0.942 38 H 0.094 0.906 39 H 0.077 0.923 40 H 0.065 0.935 41 H 0.081 0.919 42 H 0.073 0.927 43 H 0.031 0.969 44 H 0.092 0.908 45 H 0.028 0.972 46 H 0.106 0.894 47 H 0.028 0.972 48 H 0.077 0.923 49 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.437 1.149 19.561 20.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.173 3.827 3 H 0.038 0.962 4 C -0.579 4.579 5 H 0.074 0.926 6 C -0.181 4.181 7 N -0.552 5.552 8 Si 0.781 3.219 9 H -0.194 1.194 10 H -0.199 1.199 11 H -0.210 1.210 12 N -0.839 5.839 13 C -0.051 4.051 14 S 2.795 3.205 15 O -0.999 6.999 16 O -0.989 6.989 17 N -0.833 5.833 18 C 0.023 3.977 19 C -0.057 4.057 20 H 0.055 0.945 21 C -0.153 4.153 22 C -0.147 4.147 23 C -0.086 4.086 24 N -0.212 5.212 25 C -0.073 4.073 26 C 0.042 3.958 27 H 0.124 0.876 28 C 0.000 4.000 29 O -0.347 6.347 30 H 0.085 0.915 31 H 0.057 0.943 32 H 0.048 0.952 33 H 0.074 0.926 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.076 0.924 38 H 0.112 0.888 39 H 0.096 0.904 40 H 0.084 0.916 41 H 0.100 0.900 42 H 0.092 0.908 43 H 0.049 0.951 44 H 0.110 0.890 45 H 0.047 0.953 46 H 0.124 0.876 47 H 0.047 0.953 48 H 0.095 0.905 49 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -5.588 1.366 19.298 20.137 hybrid contribution 0.031 -0.767 -1.506 1.690 sum -5.557 0.600 17.793 18.650 Atomic orbital electron populations 1.21871 0.96913 0.99826 1.00064 1.18336 0.92069 0.91121 0.81146 0.96158 1.21673 1.31662 1.13059 0.91482 0.92556 1.25633 0.95163 0.95702 1.01629 1.69981 1.37216 1.23659 1.24316 0.85549 0.78296 0.78607 0.79440 1.19428 1.19902 1.20962 1.57655 1.69904 1.21085 1.35298 1.21440 1.00338 0.80749 1.02617 1.01609 0.74107 0.72370 0.72390 1.93531 1.75487 1.57248 1.73619 1.93481 1.70033 1.60814 1.74543 1.58124 1.66928 1.24791 1.33426 1.21386 0.93610 0.82274 1.00455 1.22718 0.94756 0.97319 0.90953 0.94548 1.22109 0.98146 0.95450 0.99597 1.22440 0.97869 0.96478 0.97952 1.22915 0.87950 0.96214 1.01489 1.63999 1.19640 1.15107 1.22406 1.22286 0.93447 0.89562 1.01968 1.21464 0.95632 0.95151 0.83541 0.87576 1.22315 0.95674 0.85686 0.96308 1.86843 1.67899 1.25754 1.54170 0.91531 0.94294 0.95244 0.92602 0.91842 0.90986 0.90901 0.92385 0.88758 0.90442 0.91624 0.90029 0.90795 0.95093 0.88959 0.95338 0.87585 0.95345 0.90550 0.77637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.82 8.97 71.98 0.65 -5.17 16 2 C 0.28 13.92 2.62 44.25 0.12 14.03 16 3 H 0.02 1.18 6.91 -2.38 -0.02 1.16 16 4 C -0.54 -29.61 7.99 25.60 0.20 -29.40 16 5 H 0.06 3.08 7.33 -2.91 -0.02 3.06 16 6 C 0.02 1.03 5.30 84.66 0.45 1.47 16 7 N -0.91 -51.59 11.32 21.45 0.24 -51.34 16 8 Si 0.96 43.63 29.54 68.60 2.03 45.65 16 9 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 10 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 11 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 12 N -1.00 -42.27 3.12 -520.44 -1.62 -43.89 16 13 C 0.09 3.29 9.65 127.77 1.23 4.53 16 14 S 2.78 114.23 6.06 -56.49 -0.34 113.88 16 15 O -1.01 -50.52 15.45 -128.00 -1.98 -52.50 16 16 O -1.00 -41.41 15.51 -128.00 -1.99 -43.39 16 17 N -0.99 -31.86 3.04 -489.61 -1.49 -33.35 16 18 C 0.15 4.69 5.39 86.03 0.46 5.15 16 19 C 0.05 1.43 2.70 44.51 0.12 1.55 16 20 H 0.04 1.16 6.45 -2.39 -0.02 1.14 16 21 C -0.11 -2.61 6.64 31.37 0.21 -2.40 16 22 C -0.11 -1.94 7.05 31.99 0.23 -1.72 16 23 C 0.04 0.78 6.69 86.99 0.58 1.36 16 24 N -0.49 -10.97 3.03 -862.58 -2.61 -13.59 16 25 C 0.06 1.25 5.31 86.79 0.46 1.71 16 26 C 0.15 3.69 3.02 45.19 0.14 3.82 16 27 H 0.11 2.53 7.24 -2.39 -0.02 2.52 16 28 C 0.08 1.65 6.86 71.98 0.49 2.14 16 29 O -0.54 -10.72 9.66 -148.98 -1.44 -12.16 16 30 H 0.07 3.41 6.07 -2.39 -0.01 3.39 16 31 H 0.04 1.67 7.67 -2.38 -0.02 1.65 16 32 H 0.03 1.18 6.63 -2.39 -0.02 1.17 16 33 H 0.26 14.16 8.31 -92.71 -0.77 13.39 16 34 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.07 2.68 7.02 -2.39 -0.02 2.66 16 36 H 0.07 2.36 7.02 -2.39 -0.02 2.35 16 37 H 0.06 2.15 7.23 -2.39 -0.02 2.13 16 38 H 0.09 2.85 6.80 -2.39 -0.02 2.83 16 39 H 0.08 1.72 7.98 -2.39 -0.02 1.70 16 40 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.03 0.60 8.13 -2.39 -0.02 0.58 16 44 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 45 H 0.03 0.68 7.97 -2.38 -0.02 0.66 16 46 H 0.11 1.76 8.13 -2.39 -0.02 1.74 16 47 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16 48 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 49 H 0.38 4.46 9.12 -74.06 -0.68 3.79 16 Total: -1.00 -70.03 379.25 -3.59 -73.62 By element: Atomic # 1 Polarization: 19.70 SS G_CDS: 0.28 Total: 19.97 kcal Atomic # 6 Polarization: -8.25 SS G_CDS: 5.34 Total: -2.91 kcal Atomic # 7 Polarization: -136.68 SS G_CDS: -5.49 Total: -142.17 kcal Atomic # 8 Polarization: -102.65 SS G_CDS: -5.40 Total: -108.05 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.65 kcal Atomic # 16 Polarization: 114.23 SS G_CDS: -0.34 Total: 113.88 kcal Total: -70.03 -3.59 -73.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872618044.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.520 kcal (2) G-P(sol) polarization free energy of solvation -70.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds