Wall clock time and date at job start Wed Apr 1 2020 05:33:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47222 * 2 1 4 4 C 1.50700 * 109.46920 * 119.99673 * 2 1 3 5 5 H 1.08004 * 120.00337 * 120.00144 * 4 2 1 6 6 C 1.37881 * 120.00151 * 299.99689 * 4 2 1 7 7 N 1.31513 * 120.00109 * 180.02562 * 6 4 2 8 8 Si 1.86794 * 119.99693 * 0.02562 * 6 4 2 9 9 H 1.48506 * 109.47337 * 90.00339 * 8 6 4 10 10 H 1.48503 * 109.47039 * 210.00048 * 8 6 4 11 11 H 1.48493 * 109.47516 * 329.99913 * 8 6 4 12 12 N 1.46497 * 109.47090 * 239.99475 * 2 1 3 13 13 C 1.46502 * 120.00019 * 300.00422 * 12 2 1 14 14 S 1.65600 * 120.00049 * 120.00267 * 12 2 1 15 15 O 1.42093 * 106.40045 * 336.45851 * 14 12 2 16 16 O 1.42101 * 106.40011 * 203.54147 * 14 12 2 17 17 N 1.65600 * 107.21884 * 90.00018 * 14 12 2 18 18 C 1.47520 * 120.11564 * 269.92226 * 17 14 12 19 19 C 1.52550 * 106.61306 * 130.06251 * 18 17 14 20 20 H 1.09000 * 111.08843 * 297.06525 * 19 18 17 21 21 C 1.53323 * 113.47867 * 171.91323 * 19 18 17 22 22 C 1.54947 * 104.25446 * 216.25551 * 21 19 18 23 23 C 1.55141 * 104.93878 * 2.37763 * 22 21 19 24 24 N 1.47161 * 103.58963 * 23.99719 * 23 22 21 25 25 C 1.45765 * 116.16539 * 197.70114 * 24 23 22 26 26 C 1.46854 * 120.22591 * 90.00118 * 17 14 12 27 27 H 1.09002 * 109.40186 * 346.88661 * 26 17 14 28 28 C 1.52999 * 109.40551 * 106.72234 * 26 17 14 29 29 O 1.42905 * 109.46728 * 65.16603 * 28 26 17 30 30 H 1.09006 * 109.46952 * 300.00637 * 1 2 3 31 31 H 1.08999 * 109.47177 * 59.99744 * 1 2 3 32 32 H 1.08997 * 109.47204 * 180.02562 * 1 2 3 33 33 H 0.97005 * 120.00043 * 180.02562 * 7 6 4 34 34 H 1.09007 * 109.46965 * 269.99626 * 13 12 2 35 35 H 1.09007 * 109.47302 * 29.99507 * 13 12 2 36 36 H 1.08999 * 109.47230 * 149.99903 * 13 12 2 37 37 H 1.08992 * 110.04657 * 10.78462 * 18 17 14 38 38 H 1.09002 * 110.10663 * 249.37004 * 18 17 14 39 39 H 1.09001 * 110.47241 * 334.94837 * 21 19 18 40 40 H 1.09004 * 110.47392 * 97.55618 * 21 19 18 41 41 H 1.08997 * 110.34383 * 121.24634 * 22 21 19 42 42 H 1.09001 * 110.34419 * 243.51520 * 22 21 19 43 43 H 1.08998 * 110.60790 * 265.46840 * 23 22 21 44 44 H 1.09000 * 110.59844 * 142.52056 * 23 22 21 45 45 H 1.09010 * 109.79715 * 63.62073 * 25 24 23 46 46 H 1.09002 * 109.80227 * 302.76626 * 25 24 23 47 47 H 1.09000 * 109.47486 * 305.16541 * 28 26 17 48 48 H 1.09001 * 109.47362 * 185.15818 * 28 26 17 49 49 H 0.96696 * 114.00036 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5885 1.1316 6 6 1.6992 -0.2392 2.4828 7 7 2.1380 -0.8588 3.5566 8 14 0.6248 1.2792 2.6540 9 1 -0.8029 0.8729 2.6998 10 1 0.9760 1.9954 3.9066 11 1 0.8470 2.1765 1.4919 12 7 2.0183 -0.6907 -1.1961 13 6 1.6643 -2.0933 -1.4278 14 16 2.9704 0.1140 -2.2862 15 8 2.6904 1.4970 -2.1193 16 8 2.8227 -0.5649 -3.5258 17 7 4.5437 -0.1045 -1.8179 18 6 5.1799 0.8516 -0.8920 19 6 5.8220 0.0235 0.2167 20 1 5.0697 -0.5308 0.7780 21 6 6.6984 0.8488 1.1662 22 6 7.8758 -0.0956 1.5164 23 6 7.6175 -1.3812 0.6873 24 7 6.7831 -0.9105 -0.4297 25 6 6.0486 -1.9361 -1.1601 26 6 5.3133 -1.2487 -2.3229 27 1 4.6360 -1.9608 -2.7945 28 6 6.3344 -0.7602 -3.3522 29 8 7.2929 0.0826 -2.7093 30 1 -0.3633 0.5140 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.9033 -0.5275 4.4377 34 1 2.4156 -2.7378 -0.9715 35 1 0.6902 -2.3003 -0.9844 36 1 1.6237 -2.2854 -2.5000 37 1 4.4290 1.5201 -0.4710 38 1 5.9420 1.4292 -1.4150 39 1 7.0645 1.7449 0.6650 40 1 6.1418 1.1141 2.0651 41 1 8.8240 0.3577 1.2275 42 1 7.8735 -0.3250 2.5820 43 1 7.0806 -2.1200 1.2823 44 1 8.5561 -1.7940 0.3175 45 1 5.3268 -2.4151 -0.4984 46 1 6.7430 -2.6801 -1.5505 47 1 5.8226 -0.1982 -4.1334 48 1 6.8429 -1.6168 -3.7946 49 1 7.9728 0.4293 -3.3030 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000872618048.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:33:08 Heat of formation + Delta-G solvation = -84.279362 kcal Electronic energy + Delta-G solvation = -32827.907907 eV Core-core repulsion = 28725.017356 eV Total energy + Delta-G solvation = -4102.890551 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.71330 -37.03919 -36.66506 -36.40482 -35.36630 -34.83487 -32.55054 -32.35480 -30.04239 -29.92389 -28.41334 -25.80806 -25.24409 -25.02874 -23.95164 -21.55414 -20.92588 -20.68822 -19.42503 -18.23781 -17.58334 -17.23049 -16.65410 -16.48687 -15.92369 -15.39887 -15.18911 -15.11791 -14.64554 -14.26350 -14.06837 -13.70707 -13.45086 -13.36616 -13.05849 -12.79985 -12.51687 -12.34355 -12.22832 -12.14731 -12.01816 -11.95146 -11.80622 -11.63881 -11.44866 -11.26081 -11.20752 -11.07423 -10.92376 -10.82775 -10.65294 -10.51444 -10.34921 -10.18148 -10.15473 -9.66533 -9.61245 -9.44204 -8.74787 -8.67996 -8.10171 -7.85551 -6.19641 -4.20300 1.10565 3.20278 3.30821 3.33546 3.36154 3.95331 4.26776 4.30447 4.52582 4.72292 4.76482 4.96410 5.09875 5.12022 5.20346 5.38263 5.39323 5.46200 5.54534 5.61010 5.63234 5.71173 5.80828 5.87849 5.89675 6.00705 6.06446 6.10130 6.16008 6.17392 6.22439 6.23003 6.33533 6.38029 6.43815 6.48886 6.52111 6.53670 6.66647 6.80700 6.92150 7.28273 7.30356 7.36047 7.55061 7.61238 7.93333 8.39941 8.82926 9.41712 10.92426 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010989 B = 0.006320 C = 0.004712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2547.468787 B = 4429.338226 C = 5941.276678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.240 3.760 3 H 0.055 0.945 4 C -0.522 4.522 5 H 0.080 0.920 6 C 0.078 3.922 7 N -0.892 5.892 8 Si 0.874 3.126 9 H -0.277 1.277 10 H -0.294 1.294 11 H -0.261 1.261 12 N -0.986 5.986 13 C 0.100 3.900 14 S 2.778 3.222 15 O -0.980 6.980 16 O -0.996 6.996 17 N -0.995 5.995 18 C 0.151 3.849 19 C 0.050 3.950 20 H 0.075 0.925 21 C -0.112 4.112 22 C -0.115 4.115 23 C 0.043 3.957 24 N -0.491 5.491 25 C 0.054 3.946 26 C 0.163 3.837 27 H 0.101 0.899 28 C 0.077 3.923 29 O -0.527 6.527 30 H 0.049 0.951 31 H 0.034 0.966 32 H 0.058 0.942 33 H 0.265 0.735 34 H 0.046 0.954 35 H 0.075 0.925 36 H 0.062 0.938 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.066 0.934 42 H 0.063 0.937 43 H 0.036 0.964 44 H 0.072 0.928 45 H 0.042 0.958 46 H 0.076 0.924 47 H 0.040 0.960 48 H 0.045 0.955 49 H 0.357 0.643 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.008 -1.200 -9.296 13.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.135 3.865 3 H 0.072 0.928 4 C -0.561 4.561 5 H 0.098 0.902 6 C -0.126 4.126 7 N -0.530 5.530 8 Si 0.704 3.296 9 H -0.204 1.204 10 H -0.222 1.222 11 H -0.186 1.186 12 N -0.827 5.827 13 C -0.046 4.046 14 S 2.789 3.211 15 O -0.965 6.965 16 O -0.980 6.980 17 N -0.833 5.833 18 C 0.026 3.974 19 C -0.060 4.060 20 H 0.093 0.907 21 C -0.151 4.151 22 C -0.154 4.154 23 C -0.085 4.085 24 N -0.215 5.215 25 C -0.076 4.076 26 C 0.056 3.944 27 H 0.118 0.882 28 C -0.004 4.004 29 O -0.329 6.329 30 H 0.067 0.933 31 H 0.053 0.947 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.064 0.936 35 H 0.094 0.906 36 H 0.081 0.919 37 H 0.101 0.899 38 H 0.103 0.897 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.084 0.916 42 H 0.082 0.918 43 H 0.054 0.946 44 H 0.090 0.910 45 H 0.060 0.940 46 H 0.094 0.906 47 H 0.058 0.942 48 H 0.063 0.937 49 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 9.641 -0.630 -9.740 13.719 hybrid contribution -0.775 -0.007 0.774 1.096 sum 8.866 -0.637 -8.966 12.625 Atomic orbital electron populations 1.22430 0.98985 1.01267 0.99194 1.19067 0.90867 0.93269 0.83310 0.92751 1.21152 1.32603 1.14190 0.88187 0.90154 1.24863 0.95505 0.96426 0.95763 1.69869 1.45118 1.40046 0.97935 0.87064 0.80881 0.84106 0.77568 1.20400 1.22163 1.18611 1.57523 1.64784 1.21533 1.38844 1.21281 1.02001 0.81520 0.99833 1.01935 0.72535 0.73405 0.73219 1.93566 1.83896 1.32185 1.86805 1.93520 1.86128 1.76333 1.41999 1.58193 1.29312 1.35084 1.60706 1.21342 0.97193 0.89973 0.88851 1.22826 0.94245 0.95016 0.93889 0.90705 1.22073 0.95980 0.98141 0.98871 1.22428 0.98629 0.95356 0.98940 1.22805 0.97512 0.96462 0.91770 1.64014 1.19160 1.15533 1.22827 1.22238 0.96243 0.93647 0.95488 1.21060 0.92399 0.87212 0.93732 0.88154 1.22399 0.90535 0.93541 0.93887 1.86942 1.41476 1.67289 1.37159 0.93289 0.94717 0.92262 0.92512 0.93583 0.90622 0.91918 0.89854 0.89744 0.91243 0.91078 0.91561 0.91830 0.94582 0.91004 0.94017 0.90565 0.94208 0.93689 0.79892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.41 8.65 37.16 0.32 -3.09 16 2 C 0.24 5.45 2.21 -69.09 -0.15 5.30 16 3 H 0.05 1.32 5.97 -51.93 -0.31 1.01 16 4 C -0.52 -13.30 8.95 -34.44 -0.31 -13.61 16 5 H 0.08 2.20 7.89 -52.48 -0.41 1.79 16 6 C 0.08 2.08 5.45 -17.82 -0.10 1.98 16 7 N -0.89 -25.35 13.96 55.43 0.77 -24.58 16 8 Si 0.87 20.93 24.37 -169.99 -4.14 16.79 16 9 H -0.28 -6.48 6.87 56.52 0.39 -6.09 16 10 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 11 H -0.26 -6.15 6.53 56.52 0.37 -5.78 16 12 N -0.99 -19.57 3.12 -115.85 -0.36 -19.94 16 13 C 0.10 1.71 9.90 59.85 0.59 2.30 16 14 S 2.78 53.43 6.06 -107.50 -0.65 52.78 16 15 O -0.98 -21.53 15.45 -57.17 -0.88 -22.41 16 16 O -1.00 -19.38 15.51 -57.17 -0.89 -20.27 16 17 N -0.99 -16.69 3.04 -106.10 -0.32 -17.02 16 18 C 0.15 2.56 5.39 -3.71 -0.02 2.54 16 19 C 0.05 0.82 2.70 -66.73 -0.18 0.64 16 20 H 0.08 1.51 7.98 -51.93 -0.41 1.10 16 21 C -0.11 -1.64 6.64 -25.54 -0.17 -1.81 16 22 C -0.12 -1.48 7.05 -24.57 -0.17 -1.66 16 23 C 0.04 0.57 6.69 -2.55 -0.02 0.56 16 24 N -0.49 -7.12 3.03 -224.00 -0.68 -7.80 16 25 C 0.05 0.76 5.31 -4.02 -0.02 0.74 16 26 C 0.16 2.32 3.02 -67.32 -0.20 2.12 16 27 H 0.10 1.35 7.24 -51.93 -0.38 0.98 16 28 C 0.08 0.92 6.86 37.16 0.26 1.18 16 29 O -0.53 -6.33 9.66 -35.23 -0.34 -6.67 16 30 H 0.05 1.08 3.27 -51.93 -0.17 0.91 16 31 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 1.18 6.66 -51.93 -0.35 0.84 16 33 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 34 H 0.05 0.76 8.14 -51.92 -0.42 0.34 16 35 H 0.08 1.27 6.43 -51.93 -0.33 0.94 16 36 H 0.06 0.96 7.02 -51.93 -0.36 0.60 16 37 H 0.08 1.53 7.23 -51.93 -0.38 1.16 16 38 H 0.08 1.35 6.80 -51.93 -0.35 1.00 16 39 H 0.07 0.94 7.98 -51.93 -0.41 0.53 16 40 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 42 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.04 0.52 8.13 -51.93 -0.42 0.10 16 44 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.04 0.66 7.98 -51.92 -0.41 0.24 16 46 H 0.08 0.91 8.13 -51.93 -0.42 0.49 16 47 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 49 H 0.36 2.85 9.12 45.56 0.42 3.27 16 LS Contribution 374.79 15.07 5.65 5.65 Total: -1.00 -31.22 374.79 -9.30 -40.52 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -7.28 Total: 5.75 kcal Atomic # 6 Polarization: -2.63 SS G_CDS: -0.17 Total: -2.81 kcal Atomic # 7 Polarization: -68.74 SS G_CDS: -0.59 Total: -69.33 kcal Atomic # 8 Polarization: -47.24 SS G_CDS: -2.11 Total: -49.35 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.14 Total: 16.79 kcal Atomic # 16 Polarization: 53.43 SS G_CDS: -0.65 Total: 52.78 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.22 -9.30 -40.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872618048.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.760 kcal (2) G-P(sol) polarization free energy of solvation -31.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds