Wall clock time and date at job start Wed Apr 1 2020 05:15:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 110.64305 * 2 1 4 4 C 1.54322 * 110.87193 * 236.75277 * 2 1 3 5 5 N 1.47017 * 107.27107 * 219.37684 * 4 2 1 6 6 C 1.36943 * 125.65001 * 178.89655 * 5 4 2 7 7 H 1.07997 * 119.99911 * 180.02562 * 6 5 4 8 8 C 1.38807 * 119.99736 * 0.02562 * 6 5 4 9 9 N 1.31623 * 120.00248 * 0.02562 * 8 6 5 10 10 Si 1.86807 * 119.99712 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46826 * 90.00448 * 10 8 6 12 12 H 1.48505 * 109.46852 * 210.00076 * 10 8 6 13 13 H 1.48494 * 109.47453 * 330.00396 * 10 8 6 14 14 C 1.47424 * 108.70242 * 358.93742 * 5 4 2 15 15 C 1.54901 * 104.83342 * 24.13279 * 14 5 4 16 16 H 1.09002 * 111.03764 * 81.07849 * 15 14 5 17 17 C 1.52998 * 111.00865 * 204.91566 * 15 14 5 18 18 N 1.46506 * 109.46837 * 287.19480 * 17 15 14 19 19 C 1.34775 * 119.99593 * 179.97438 * 18 17 15 20 20 O 1.21280 * 120.00238 * 0.02562 * 19 18 17 21 21 C 1.50707 * 119.99645 * 179.97438 * 19 18 17 22 22 C 1.52998 * 109.46889 * 85.00567 * 21 19 18 23 23 C 1.52996 * 109.46956 * 205.00034 * 21 19 18 24 24 N 1.46498 * 109.47076 * 325.00367 * 21 19 18 25 25 S 1.65606 * 119.99639 * 185.89323 * 24 21 19 26 26 C 1.81397 * 104.44820 * 71.91644 * 25 24 21 27 27 O 1.42102 * 104.27308 * 187.98454 * 25 24 21 28 28 O 1.42099 * 104.27536 * 315.84467 * 25 24 21 29 29 H 1.08994 * 109.47386 * 296.85939 * 1 2 3 30 30 H 1.09001 * 109.46664 * 56.85908 * 1 2 3 31 31 H 1.09000 * 109.46987 * 176.85383 * 1 2 3 32 32 H 1.09004 * 109.88288 * 338.79078 * 4 2 1 33 33 H 1.08998 * 109.88078 * 99.95698 * 4 2 1 34 34 H 0.96996 * 119.99645 * 179.97438 * 9 8 6 35 35 H 1.08995 * 110.37297 * 265.29088 * 14 5 4 36 36 H 1.09012 * 110.36439 * 142.96958 * 14 5 4 37 37 H 1.09000 * 109.47558 * 167.19301 * 17 15 14 38 38 H 1.08997 * 109.46932 * 47.19234 * 17 15 14 39 39 H 0.96998 * 120.00000 * 359.97438 * 18 17 15 40 40 H 1.09000 * 109.47363 * 51.40107 * 22 21 19 41 41 H 1.09003 * 109.47187 * 171.40505 * 22 21 19 42 42 H 1.09004 * 109.47012 * 291.40337 * 22 21 19 43 43 H 1.09005 * 109.47281 * 71.54398 * 23 21 19 44 44 H 1.09001 * 109.47047 * 191.53891 * 23 21 19 45 45 H 1.08996 * 109.47766 * 311.54121 * 23 21 19 46 46 H 0.96995 * 120.00418 * 5.89092 * 24 21 19 47 47 H 1.09000 * 109.47574 * 50.74572 * 26 25 24 48 48 H 1.08995 * 109.47382 * 170.74596 * 26 25 24 49 49 H 1.09004 * 109.47267 * 290.74429 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0799 -0.7906 -1.2059 5 7 3.2494 -1.5470 -0.7354 6 6 4.0115 -2.3931 -1.4960 7 1 4.8540 -2.9048 -1.0548 8 6 3.7011 -2.5929 -2.8341 9 7 2.6746 -1.9689 -3.3719 10 14 4.7412 -3.7465 -3.8720 11 1 4.1836 -5.1207 -3.7942 12 1 4.7305 -3.2872 -5.2841 13 1 6.1361 -3.7488 -3.3627 14 6 3.4651 -1.2447 0.6913 15 6 2.0790 -0.7934 1.2151 16 1 1.4465 -1.6526 1.4388 17 6 2.2236 0.1111 2.4406 18 7 2.6287 -0.6933 3.5961 19 6 2.8184 -0.1047 4.7936 20 8 2.6534 1.0907 4.9148 21 6 3.2346 -0.9323 5.9824 22 6 4.7562 -1.0925 5.9846 23 6 2.7936 -0.2332 7.2699 24 7 2.6046 -2.2525 5.9030 25 16 2.7677 -3.3243 7.1549 26 6 1.7329 -2.6371 8.4768 27 8 2.2056 -4.5312 6.6582 28 8 4.1424 -3.2463 7.5061 29 1 -0.3634 0.4643 0.9167 30 1 -0.3633 0.5618 -0.8605 31 1 -0.3633 -1.0261 -0.0564 32 1 1.3190 -1.4773 -1.5770 33 1 2.3775 -0.1015 -1.9963 34 1 2.4580 -2.1083 -4.3071 35 1 4.1929 -0.4410 0.8030 36 1 3.7992 -2.1365 1.2218 37 1 1.2691 0.5938 2.6506 38 1 2.9797 0.8711 2.2439 39 1 2.7604 -1.6494 3.4993 40 1 5.2249 -0.1130 5.8896 41 1 5.0713 -1.5570 6.9190 42 1 5.0565 -1.7217 5.1467 43 1 1.7100 -0.3005 7.3671 44 1 3.2658 -0.7160 8.1255 45 1 3.0908 0.8149 7.2345 46 1 2.0920 -2.4988 5.1173 47 1 0.7410 -2.4146 8.0834 48 1 1.6485 -3.3621 9.2862 49 1 2.1875 -1.7214 8.8552 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001102449004.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:44 Heat of formation + Delta-G solvation = -78.464414 kcal Electronic energy + Delta-G solvation = -30033.965528 eV Core-core repulsion = 25931.327133 eV Total energy + Delta-G solvation = -4102.638396 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.50121 -38.23405 -37.58758 -36.60389 -36.23017 -34.87199 -32.96653 -31.05175 -30.75801 -30.28909 -29.37781 -27.36015 -26.11348 -25.37182 -23.77899 -22.42272 -20.57008 -20.04880 -19.63426 -19.31881 -18.61603 -17.50185 -16.78160 -16.71518 -16.12493 -15.93466 -15.51174 -15.11176 -14.71388 -14.37504 -14.27457 -14.03422 -13.78525 -13.70151 -13.60253 -13.30048 -13.02573 -12.89688 -12.74245 -12.56548 -12.43798 -12.29229 -12.02169 -11.93038 -11.83092 -11.72462 -11.62281 -11.42990 -11.39205 -11.24784 -10.82901 -10.79184 -10.24510 -10.13836 -10.03034 -10.01985 -9.93580 -9.70376 -9.56366 -9.11786 -8.61455 -6.84695 -5.72440 -3.06076 -0.13751 2.09330 2.54536 2.92559 3.39742 3.45030 3.45530 3.46700 3.76240 4.11216 4.30462 4.39447 4.48164 4.56982 4.60157 4.72250 5.00964 5.06499 5.14668 5.25170 5.27710 5.33589 5.50049 5.53066 5.55113 5.59689 5.70389 5.79630 5.80235 5.97310 6.02882 6.10267 6.13832 6.22982 6.30639 6.39973 6.44886 6.53680 6.58682 6.71304 6.89939 7.34630 7.55461 7.61876 7.82227 8.00244 8.24654 9.20973 9.81208 10.46806 11.39118 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013552 B = 0.002723 C = 0.002476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2065.592135 B =10279.409651 C =11308.130819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.110 4.110 3 H 0.067 0.933 4 C 0.184 3.816 5 N -0.606 5.606 6 C -0.229 4.229 7 H 0.077 0.923 8 C -0.008 4.008 9 N -0.921 5.921 10 Si 0.912 3.088 11 H -0.289 1.289 12 H -0.291 1.291 13 H -0.281 1.281 14 C 0.141 3.859 15 C -0.115 4.115 16 H 0.081 0.919 17 C 0.131 3.869 18 N -0.718 5.718 19 C 0.521 3.479 20 O -0.533 6.533 21 C 0.167 3.833 22 C -0.176 4.176 23 C -0.180 4.180 24 N -1.114 6.114 25 S 2.614 3.386 26 C -0.686 4.686 27 O -0.955 6.955 28 O -0.948 6.948 29 H 0.044 0.956 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.049 0.951 33 H 0.041 0.959 34 H 0.252 0.748 35 H 0.019 0.981 36 H 0.036 0.964 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.402 0.598 40 H 0.073 0.927 41 H 0.104 0.896 42 H 0.072 0.928 43 H 0.074 0.926 44 H 0.072 0.928 45 H 0.099 0.901 46 H 0.419 0.581 47 H 0.130 0.870 48 H 0.128 0.872 49 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.998 2.716 24.295 24.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.130 4.130 3 H 0.086 0.914 4 C 0.059 3.941 5 N -0.332 5.332 6 C -0.357 4.357 7 H 0.095 0.905 8 C -0.204 4.204 9 N -0.569 5.569 10 Si 0.742 3.258 11 H -0.216 1.216 12 H -0.217 1.217 13 H -0.207 1.207 14 C 0.015 3.985 15 C -0.135 4.135 16 H 0.099 0.901 17 C 0.007 3.993 18 N -0.370 5.370 19 C 0.305 3.695 20 O -0.409 6.409 21 C 0.075 3.925 22 C -0.235 4.235 23 C -0.238 4.238 24 N -0.874 5.874 25 S 2.706 3.294 26 C -0.835 4.835 27 O -0.945 6.945 28 O -0.938 6.938 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.037 0.963 36 H 0.054 0.946 37 H 0.086 0.914 38 H 0.089 0.911 39 H 0.237 0.763 40 H 0.092 0.908 41 H 0.122 0.878 42 H 0.091 0.909 43 H 0.093 0.907 44 H 0.091 0.909 45 H 0.118 0.882 46 H 0.254 0.746 47 H 0.149 0.851 48 H 0.146 0.854 49 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -3.487 2.787 24.267 24.674 hybrid contribution -0.175 -0.679 -0.850 1.102 sum -3.661 2.107 23.417 23.795 Atomic orbital electron populations 1.21692 0.95289 1.01643 1.00541 1.22438 0.95142 0.99111 0.96282 0.91432 1.21221 0.89068 0.93124 0.90691 1.44455 1.32481 1.51631 1.04626 1.19053 1.07550 1.17808 0.91336 0.90478 1.24799 0.98424 1.00294 0.96891 1.69961 1.28822 1.45511 1.12601 0.86124 0.79564 0.80347 0.79750 1.21595 1.21689 1.20701 1.21589 0.92905 0.97076 0.86942 1.22703 0.99563 0.98090 0.93107 0.90075 1.21482 1.00303 0.93820 0.83650 1.46135 1.68995 1.12492 1.09357 1.20222 0.77121 0.88219 0.83980 1.90726 1.50804 1.14676 1.84677 1.20396 0.95313 0.81536 0.95265 1.22599 0.90929 1.03688 1.06240 1.22657 1.02565 1.04073 0.94538 1.55880 1.67992 1.28220 1.35349 1.04820 0.75766 0.73415 0.75426 1.30984 1.17636 1.14747 1.20149 1.93649 1.80634 1.42305 1.77900 1.93598 1.29989 1.86102 1.84094 0.93706 0.92742 0.92688 0.93279 0.94032 0.93764 0.96320 0.94606 0.91362 0.91090 0.76268 0.90840 0.87754 0.90921 0.90716 0.90903 0.88236 0.74558 0.85084 0.85387 0.84420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.99 9.17 37.16 0.34 -1.65 16 2 C -0.11 -1.91 3.01 -88.78 -0.27 -2.18 16 3 H 0.07 1.14 8.04 -51.93 -0.42 0.73 16 4 C 0.18 4.31 4.97 -3.07 -0.02 4.29 16 5 N -0.61 -15.07 3.39 -170.08 -0.58 -15.65 16 6 C -0.23 -6.32 10.28 -15.06 -0.15 -6.48 16 7 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 8 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 9 N -0.92 -26.81 10.31 55.49 0.57 -26.24 16 10 Si 0.91 22.05 29.55 -169.99 -5.02 17.03 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 13 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 14 C 0.14 2.75 6.65 -2.53 -0.02 2.73 16 15 C -0.11 -1.80 2.49 -88.48 -0.22 -2.02 16 16 H 0.08 1.24 8.05 -51.93 -0.42 0.83 16 17 C 0.13 1.73 5.13 -4.04 -0.02 1.71 16 18 N -0.72 -8.09 5.21 -60.29 -0.31 -8.41 16 19 C 0.52 5.94 6.65 -10.98 -0.07 5.87 16 20 O -0.53 -7.72 15.85 5.56 0.09 -7.63 16 21 C 0.17 1.42 1.04 -132.97 -0.14 1.28 16 22 C -0.18 -1.59 8.01 37.16 0.30 -1.29 16 23 C -0.18 -1.18 6.59 37.16 0.24 -0.94 16 24 N -1.11 -8.08 5.27 -0.40 0.00 -8.09 16 25 S 2.61 19.24 5.75 -107.50 -0.62 18.62 16 26 C -0.69 -2.56 9.52 101.05 0.96 -1.60 16 27 O -0.95 -10.73 18.08 -57.54 -1.04 -11.77 16 28 O -0.95 -9.37 14.80 -57.54 -0.85 -10.22 16 29 H 0.04 0.56 8.08 -51.93 -0.42 0.14 16 30 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.05 0.84 8.07 -51.93 -0.42 0.42 16 32 H 0.05 1.28 7.02 -51.93 -0.36 0.91 16 33 H 0.04 1.10 7.51 -51.93 -0.39 0.71 16 34 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 35 H 0.02 0.38 7.91 -51.93 -0.41 -0.03 16 36 H 0.04 0.67 8.14 -51.92 -0.42 0.25 16 37 H 0.07 0.88 8.09 -51.93 -0.42 0.46 16 38 H 0.07 1.02 7.96 -51.93 -0.41 0.61 16 39 H 0.40 3.98 7.11 -40.82 -0.29 3.69 16 40 H 0.07 0.65 8.12 -51.93 -0.42 0.23 16 41 H 0.10 0.93 5.68 -51.93 -0.30 0.63 16 42 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.07 0.39 7.41 -51.93 -0.38 0.01 16 44 H 0.07 0.32 5.86 -51.93 -0.30 0.02 16 45 H 0.10 0.75 7.43 -51.93 -0.39 0.36 16 46 H 0.42 2.77 7.19 -34.47 -0.25 2.52 16 47 H 0.13 0.34 8.14 -51.92 -0.42 -0.08 16 48 H 0.13 0.32 8.14 -51.93 -0.42 -0.10 16 49 H 0.14 0.37 5.06 -51.92 -0.26 0.10 16 LS Contribution 389.98 15.07 5.88 5.88 Total: -1.00 -36.12 389.98 -8.97 -45.09 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -7.92 Total: 1.98 kcal Atomic # 6 Polarization: -1.43 SS G_CDS: 0.84 Total: -0.59 kcal Atomic # 7 Polarization: -58.06 SS G_CDS: -0.32 Total: -58.38 kcal Atomic # 8 Polarization: -27.83 SS G_CDS: -1.80 Total: -29.63 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Atomic # 16 Polarization: 19.24 SS G_CDS: -0.62 Total: 18.62 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -36.12 -8.97 -45.09 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102449004.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.374 kcal (2) G-P(sol) polarization free energy of solvation -36.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds