Wall clock time and date at job start Wed Apr 1 2020 05:15:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 110.64305 * 2 1 4 4 C 1.54322 * 110.87193 * 236.75277 * 2 1 3 5 5 N 1.47017 * 107.27107 * 219.37684 * 4 2 1 6 6 C 1.36943 * 125.65001 * 178.89655 * 5 4 2 7 7 H 1.07997 * 119.99911 * 180.02562 * 6 5 4 8 8 C 1.38807 * 119.99736 * 0.02562 * 6 5 4 9 9 N 1.31623 * 120.00248 * 0.02562 * 8 6 5 10 10 Si 1.86807 * 119.99712 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46826 * 90.00448 * 10 8 6 12 12 H 1.48505 * 109.46852 * 210.00076 * 10 8 6 13 13 H 1.48494 * 109.47453 * 330.00396 * 10 8 6 14 14 C 1.47424 * 108.70242 * 358.93742 * 5 4 2 15 15 C 1.54901 * 104.83342 * 24.13279 * 14 5 4 16 16 H 1.09002 * 111.03764 * 81.07849 * 15 14 5 17 17 C 1.52998 * 111.00865 * 204.91566 * 15 14 5 18 18 N 1.46506 * 109.46837 * 287.19480 * 17 15 14 19 19 C 1.34775 * 119.99593 * 179.97438 * 18 17 15 20 20 O 1.21280 * 120.00238 * 0.02562 * 19 18 17 21 21 C 1.50707 * 119.99645 * 179.97438 * 19 18 17 22 22 C 1.52998 * 109.46889 * 85.00567 * 21 19 18 23 23 C 1.52996 * 109.46956 * 205.00034 * 21 19 18 24 24 N 1.46498 * 109.47076 * 325.00367 * 21 19 18 25 25 S 1.65606 * 119.99639 * 185.89323 * 24 21 19 26 26 C 1.81397 * 104.44820 * 71.91644 * 25 24 21 27 27 O 1.42102 * 104.27308 * 187.98454 * 25 24 21 28 28 O 1.42099 * 104.27536 * 315.84467 * 25 24 21 29 29 H 1.08994 * 109.47386 * 296.85939 * 1 2 3 30 30 H 1.09001 * 109.46664 * 56.85908 * 1 2 3 31 31 H 1.09000 * 109.46987 * 176.85383 * 1 2 3 32 32 H 1.09004 * 109.88288 * 338.79078 * 4 2 1 33 33 H 1.08998 * 109.88078 * 99.95698 * 4 2 1 34 34 H 0.96996 * 119.99645 * 179.97438 * 9 8 6 35 35 H 1.08995 * 110.37297 * 265.29088 * 14 5 4 36 36 H 1.09012 * 110.36439 * 142.96958 * 14 5 4 37 37 H 1.09000 * 109.47558 * 167.19301 * 17 15 14 38 38 H 1.08997 * 109.46932 * 47.19234 * 17 15 14 39 39 H 0.96998 * 120.00000 * 359.97438 * 18 17 15 40 40 H 1.09000 * 109.47363 * 51.40107 * 22 21 19 41 41 H 1.09003 * 109.47187 * 171.40505 * 22 21 19 42 42 H 1.09004 * 109.47012 * 291.40337 * 22 21 19 43 43 H 1.09005 * 109.47281 * 71.54398 * 23 21 19 44 44 H 1.09001 * 109.47047 * 191.53891 * 23 21 19 45 45 H 1.08996 * 109.47766 * 311.54121 * 23 21 19 46 46 H 0.96995 * 120.00418 * 5.89092 * 24 21 19 47 47 H 1.09000 * 109.47574 * 50.74572 * 26 25 24 48 48 H 1.08995 * 109.47382 * 170.74596 * 26 25 24 49 49 H 1.09004 * 109.47267 * 290.74429 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0799 -0.7906 -1.2059 5 7 3.2494 -1.5470 -0.7354 6 6 4.0115 -2.3931 -1.4960 7 1 4.8540 -2.9048 -1.0548 8 6 3.7011 -2.5929 -2.8341 9 7 2.6746 -1.9689 -3.3719 10 14 4.7412 -3.7465 -3.8720 11 1 4.1836 -5.1207 -3.7942 12 1 4.7305 -3.2872 -5.2841 13 1 6.1361 -3.7488 -3.3627 14 6 3.4651 -1.2447 0.6913 15 6 2.0790 -0.7934 1.2151 16 1 1.4465 -1.6526 1.4388 17 6 2.2236 0.1111 2.4406 18 7 2.6287 -0.6933 3.5961 19 6 2.8184 -0.1047 4.7936 20 8 2.6534 1.0907 4.9148 21 6 3.2346 -0.9323 5.9824 22 6 4.7562 -1.0925 5.9846 23 6 2.7936 -0.2332 7.2699 24 7 2.6046 -2.2525 5.9030 25 16 2.7677 -3.3243 7.1549 26 6 1.7329 -2.6371 8.4768 27 8 2.2056 -4.5312 6.6582 28 8 4.1424 -3.2463 7.5061 29 1 -0.3634 0.4643 0.9167 30 1 -0.3633 0.5618 -0.8605 31 1 -0.3633 -1.0261 -0.0564 32 1 1.3190 -1.4773 -1.5770 33 1 2.3775 -0.1015 -1.9963 34 1 2.4580 -2.1083 -4.3071 35 1 4.1929 -0.4410 0.8030 36 1 3.7992 -2.1365 1.2218 37 1 1.2691 0.5938 2.6506 38 1 2.9797 0.8711 2.2439 39 1 2.7604 -1.6494 3.4993 40 1 5.2249 -0.1130 5.8896 41 1 5.0713 -1.5570 6.9190 42 1 5.0565 -1.7217 5.1467 43 1 1.7100 -0.3005 7.3671 44 1 3.2658 -0.7160 8.1255 45 1 3.0908 0.8149 7.2345 46 1 2.0920 -2.4988 5.1173 47 1 0.7410 -2.4146 8.0834 48 1 1.6485 -3.3621 9.2862 49 1 2.1875 -1.7214 8.8552 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001102449004.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:43 Heat of formation + Delta-G solvation = -107.432829 kcal Electronic energy + Delta-G solvation = -30035.221693 eV Core-core repulsion = 25931.327133 eV Total energy + Delta-G solvation = -4103.894560 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.39804 -39.70971 -38.32403 -37.34942 -36.90874 -36.13883 -34.67001 -32.54473 -31.62566 -30.98354 -30.49637 -27.96524 -27.85422 -26.81419 -25.05869 -23.68462 -21.65462 -21.53075 -20.64790 -20.17364 -19.47378 -18.79670 -18.14407 -17.38970 -17.19456 -16.70665 -16.57374 -16.40848 -15.99063 -15.62361 -15.41939 -15.00628 -14.85939 -14.49198 -14.40347 -14.29581 -14.15980 -13.93872 -13.76713 -13.44505 -13.43077 -13.23803 -13.14085 -13.10463 -12.89871 -12.84206 -12.69905 -12.55492 -12.50419 -12.40322 -12.32094 -11.95197 -11.91407 -11.84318 -11.56521 -11.40209 -11.36140 -10.78240 -10.70599 -10.66444 -10.13089 -8.89268 -7.85211 -5.20509 -0.66715 1.36596 1.45124 1.46574 1.55139 1.80431 2.04013 2.48751 2.93240 3.24746 3.32718 3.41040 3.60242 3.73010 3.86524 3.90235 3.93428 3.95744 3.97265 4.16501 4.24988 4.37423 4.50318 4.60986 4.61278 4.73782 4.77045 4.81689 4.86121 4.87857 4.93074 4.96681 5.01905 5.09471 5.15257 5.26694 5.35527 5.37766 5.39898 5.47050 5.47864 5.72480 5.82232 5.82782 6.20501 6.44810 7.09790 7.10854 7.78437 8.42390 9.24773 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013552 B = 0.002723 C = 0.002476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2065.592135 B =10279.409651 C =11308.130819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.100 4.100 3 H 0.075 0.925 4 C 0.191 3.809 5 N -0.629 5.629 6 C -0.243 4.243 7 H 0.081 0.919 8 C -0.066 4.066 9 N -0.950 5.950 10 Si 0.976 3.024 11 H -0.285 1.285 12 H -0.295 1.295 13 H -0.270 1.270 14 C 0.136 3.864 15 C -0.093 4.093 16 H 0.091 0.909 17 C 0.143 3.857 18 N -0.715 5.715 19 C 0.523 3.477 20 O -0.562 6.562 21 C 0.174 3.826 22 C -0.178 4.178 23 C -0.186 4.186 24 N -1.113 6.113 25 S 2.617 3.383 26 C -0.665 4.665 27 O -0.999 6.999 28 O -0.980 6.980 29 H 0.078 0.922 30 H 0.052 0.948 31 H 0.047 0.953 32 H 0.016 0.984 33 H -0.001 1.001 34 H 0.246 0.754 35 H 0.018 0.982 36 H 0.044 0.956 37 H 0.083 0.917 38 H 0.060 0.940 39 H 0.409 0.591 40 H 0.072 0.928 41 H 0.108 0.892 42 H 0.062 0.938 43 H 0.093 0.907 44 H 0.096 0.904 45 H 0.090 0.910 46 H 0.422 0.578 47 H 0.151 0.849 48 H 0.147 0.853 49 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.808 2.904 27.215 27.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.120 4.120 3 H 0.093 0.907 4 C 0.066 3.934 5 N -0.355 5.355 6 C -0.372 4.372 7 H 0.099 0.901 8 C -0.259 4.259 9 N -0.599 5.599 10 Si 0.805 3.195 11 H -0.212 1.212 12 H -0.222 1.222 13 H -0.195 1.195 14 C 0.011 3.989 15 C -0.112 4.112 16 H 0.109 0.891 17 C 0.019 3.981 18 N -0.367 5.367 19 C 0.308 3.692 20 O -0.440 6.440 21 C 0.082 3.918 22 C -0.237 4.237 23 C -0.244 4.244 24 N -0.873 5.873 25 S 2.713 3.287 26 C -0.819 4.819 27 O -0.989 6.989 28 O -0.970 6.970 29 H 0.097 0.903 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.034 0.966 33 H 0.017 0.983 34 H 0.055 0.945 35 H 0.035 0.965 36 H 0.063 0.937 37 H 0.101 0.899 38 H 0.079 0.921 39 H 0.246 0.754 40 H 0.091 0.909 41 H 0.126 0.874 42 H 0.081 0.919 43 H 0.111 0.889 44 H 0.114 0.886 45 H 0.109 0.891 46 H 0.258 0.742 47 H 0.169 0.831 48 H 0.165 0.835 49 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -4.259 2.947 27.194 27.683 hybrid contribution 0.107 -0.708 -1.699 1.844 sum -4.152 2.239 25.495 25.928 Atomic orbital electron populations 1.21638 0.92864 1.01651 1.02281 1.22305 0.97026 0.98543 0.94096 0.90681 1.20988 0.88023 0.91970 0.92395 1.44783 1.32556 1.51330 1.06832 1.19448 1.07842 1.17882 0.92013 0.90133 1.25626 0.99851 1.02210 0.98188 1.70188 1.30370 1.46974 1.12333 0.85111 0.78501 0.78284 0.77634 1.21193 1.22158 1.19527 1.21781 0.95285 0.97396 0.84471 1.22504 0.96856 0.98487 0.93386 0.89123 1.21226 1.00808 0.92974 0.83076 1.46069 1.68885 1.12763 1.09008 1.20657 0.76152 0.88036 0.84364 1.90715 1.52075 1.16052 1.85157 1.20324 0.94831 0.81678 0.94940 1.22631 0.91585 1.03456 1.06029 1.22772 1.04079 1.03476 0.94041 1.55738 1.68033 1.27531 1.35976 1.04519 0.75433 0.72782 0.75929 1.30793 1.17296 1.15598 1.18185 1.93595 1.81133 1.44868 1.79339 1.93554 1.32507 1.86400 1.84511 0.90300 0.92845 0.93364 0.96591 0.98316 0.94470 0.96461 0.93731 0.89904 0.92129 0.75421 0.90903 0.87390 0.91923 0.88853 0.88580 0.89126 0.74243 0.83068 0.83454 0.82635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.56 9.17 71.98 0.66 -2.90 16 2 C -0.10 -3.42 3.01 -9.60 -0.03 -3.45 16 3 H 0.07 2.47 8.04 -2.39 -0.02 2.45 16 4 C 0.19 9.30 4.97 86.73 0.43 9.74 16 5 N -0.63 -32.01 3.39 -692.01 -2.35 -34.36 16 6 C -0.24 -13.67 10.28 84.03 0.86 -12.80 16 7 H 0.08 4.34 7.83 -2.91 -0.02 4.32 16 8 C -0.07 -3.77 5.49 84.86 0.47 -3.30 16 9 N -0.95 -57.44 10.31 21.65 0.22 -57.22 16 10 Si 0.98 46.21 29.55 68.60 2.03 48.24 16 11 H -0.29 -13.22 7.11 99.48 0.71 -12.52 16 12 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 13 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 14 C 0.14 5.25 6.65 86.85 0.58 5.83 16 15 C -0.09 -2.77 2.49 -9.40 -0.02 -2.80 16 16 H 0.09 2.59 8.05 -2.39 -0.02 2.57 16 17 C 0.14 3.47 5.13 86.38 0.44 3.91 16 18 N -0.72 -14.75 5.21 -463.05 -2.41 -17.16 16 19 C 0.52 10.93 6.65 87.66 0.58 11.52 16 20 O -0.56 -15.26 15.85 -3.03 -0.05 -15.30 16 21 C 0.17 2.62 1.04 2.86 0.00 2.62 16 22 C -0.18 -3.03 8.01 71.98 0.58 -2.45 16 23 C -0.19 -1.87 6.59 71.98 0.47 -1.40 16 24 N -1.11 -14.04 5.27 -155.19 -0.82 -14.86 16 25 S 2.62 33.86 5.75 -56.49 -0.32 33.54 16 26 C -0.67 -2.24 9.52 113.37 1.08 -1.16 16 27 O -1.00 -21.66 18.08 -127.65 -2.31 -23.96 16 28 O -0.98 -18.18 14.80 -127.65 -1.89 -20.07 16 29 H 0.08 1.71 8.08 -2.39 -0.02 1.69 16 30 H 0.05 1.50 8.14 -2.39 -0.02 1.49 16 31 H 0.05 1.42 8.07 -2.39 -0.02 1.40 16 32 H 0.02 0.87 7.02 -2.39 -0.02 0.85 16 33 H 0.00 -0.08 7.51 -2.39 -0.02 -0.10 16 34 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 35 H 0.02 0.69 7.91 -2.39 -0.02 0.67 16 36 H 0.04 1.64 8.14 -2.38 -0.02 1.62 16 37 H 0.08 1.85 8.09 -2.39 -0.02 1.83 16 38 H 0.06 1.64 7.96 -2.39 -0.02 1.62 16 39 H 0.41 7.38 7.11 -92.71 -0.66 6.72 16 40 H 0.07 1.22 8.12 -2.39 -0.02 1.20 16 41 H 0.11 1.79 5.68 -2.39 -0.01 1.77 16 42 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 43 H 0.09 0.60 7.41 -2.38 -0.02 0.58 16 44 H 0.10 0.50 5.86 -2.39 -0.01 0.48 16 45 H 0.09 1.15 7.43 -2.39 -0.02 1.13 16 46 H 0.42 4.85 7.19 -96.75 -0.70 4.15 16 47 H 0.15 0.05 8.14 -2.39 -0.02 0.03 16 48 H 0.15 0.09 8.14 -2.39 -0.02 0.07 16 49 H 0.16 0.07 5.06 -2.39 -0.01 0.06 16 Total: -1.00 -81.46 389.98 -2.18 -83.64 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: -0.39 Total: 14.16 kcal Atomic # 6 Polarization: -2.75 SS G_CDS: 6.11 Total: 3.36 kcal Atomic # 7 Polarization: -118.24 SS G_CDS: -5.36 Total: -123.60 kcal Atomic # 8 Polarization: -55.09 SS G_CDS: -4.25 Total: -59.33 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 2.03 Total: 48.24 kcal Atomic # 16 Polarization: 33.86 SS G_CDS: -0.32 Total: 33.54 kcal Total: -81.46 -2.18 -83.64 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102449004.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.793 kcal (2) G-P(sol) polarization free energy of solvation -81.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds