Wall clock time and date at job start Wed Apr 1 2020 05:14:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46498 * 1
3 3 S 1.65600 * 120.00251 * 2 1
4 4 O 1.42094 * 104.27783 * 308.92857 * 3 2 1
5 5 O 1.42105 * 104.27515 * 181.07003 * 3 2 1
6 6 C 1.81405 * 104.44750 * 65.00173 * 3 2 1
7 7 C 1.53001 * 109.46629 * 179.97438 * 6 3 2
8 8 C 1.50704 * 109.46599 * 179.97438 * 7 6 3
9 9 O 1.21278 * 120.00132 * 0.02562 * 8 7 6
10 10 N 1.34777 * 119.99643 * 179.97438 * 8 7 6
11 11 C 1.46499 * 119.99790 * 179.97438 * 10 8 7
12 12 C 1.52998 * 109.47243 * 180.02562 * 11 10 8
13 13 C 1.53002 * 109.47515 * 180.02562 * 12 11 10
14 14 H 1.09000 * 110.63772 * 51.85599 * 13 12 11
15 15 C 1.54335 * 110.84636 * 288.69230 * 13 12 11
16 16 N 1.47022 * 107.26195 * 219.66998 * 15 13 12
17 17 C 1.36935 * 125.64427 * 178.84992 * 16 15 13
18 18 H 1.08000 * 120.00518 * 359.44761 * 17 16 15
19 19 C 1.38817 * 119.99990 * 179.71412 * 17 16 15
20 20 N 1.31617 * 119.99869 * 0.02562 * 19 17 16
21 21 Si 1.86800 * 119.99909 * 179.97438 * 19 17 16
22 22 H 1.48498 * 109.47028 * 60.00888 * 21 19 17
23 23 H 1.48503 * 109.46851 * 180.02562 * 21 19 17
24 24 H 1.48492 * 109.47412 * 300.00497 * 21 19 17
25 25 C 1.47426 * 108.70625 * 358.58545 * 16 15 13
26 26 C 1.54912 * 104.82994 * 24.35934 * 25 16 15
27 27 H 1.08995 * 111.00742 * 81.05954 * 26 25 16
28 28 C 1.52998 * 111.00086 * 204.87731 * 26 25 16
29 29 H 1.09003 * 109.47196 * 59.99673 * 1 2 3
30 30 H 1.08990 * 109.47919 * 179.97438 * 1 2 3
31 31 H 1.08998 * 109.47045 * 300.00497 * 1 2 3
32 32 H 0.97007 * 119.99705 * 179.97438 * 2 1 3
33 33 H 1.08997 * 109.47308 * 59.99962 * 6 3 2
34 34 H 1.08995 * 109.46739 * 299.99710 * 6 3 2
35 35 H 1.08997 * 109.47047 * 60.00119 * 7 6 3
36 36 H 1.08995 * 109.47582 * 299.99510 * 7 6 3
37 37 H 0.97000 * 120.00187 * 0.02562 * 10 8 7
38 38 H 1.09005 * 109.47065 * 60.00370 * 11 10 8
39 39 H 1.08992 * 109.47740 * 300.00587 * 11 10 8
40 40 H 1.09004 * 109.47529 * 60.00110 * 12 11 10
41 41 H 1.09005 * 109.47175 * 300.00548 * 12 11 10
42 42 H 1.09007 * 109.99076 * 100.19801 * 15 13 12
43 43 H 1.09002 * 109.78210 * 339.02796 * 15 13 12
44 44 H 0.96996 * 119.99743 * 179.97438 * 20 19 17
45 45 H 1.08998 * 110.36404 * 143.19245 * 25 16 15
46 46 H 1.08995 * 110.36566 * 265.51629 * 25 16 15
47 47 H 1.08996 * 109.47303 * 58.54471 * 28 26 25
48 48 H 1.09006 * 109.46537 * 178.54319 * 28 26 25
49 49 H 1.08996 * 109.47165 * 298.54472 * 28 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 16 2.2930 1.4341 0.0000
4 8 1.7189 2.1702 -1.0713
5 8 3.6607 1.0490 -0.0257
6 6 1.8765 2.1973 1.5921
7 6 2.5901 3.5452 1.7137
8 6 2.2436 4.1794 3.0361
9 8 1.4995 3.6093 3.8056
10 7 2.7613 5.3798 3.3639
11 6 2.4240 5.9967 4.6492
12 6 3.1377 7.3445 4.7709
13 6 2.7859 7.9885 6.1135
14 1 2.9639 7.2915 6.9324
15 6 1.3217 8.4763 6.1218
16 7 1.2961 9.7681 6.8234
17 6 0.1863 10.5442 7.0261
18 1 -0.7733 10.2235 6.6484
19 6 0.2957 11.7459 7.7123
20 7 1.4662 12.1396 8.1676
21 14 -1.2181 12.8050 7.9882
22 1 -2.2237 12.0380 8.7664
23 1 -0.8366 14.0272 8.7406
24 1 -1.7971 13.1921 6.6768
25 6 2.6619 10.0863 7.2780
26 6 3.5918 9.2979 6.3222
27 1 3.7246 9.8293 5.3798
28 6 4.9421 9.0125 6.9825
29 1 -0.3634 0.5139 -0.8900
30 1 -0.3634 -1.0275 -0.0005
31 1 -0.3633 0.5139 0.8899
32 1 1.9500 -0.8401 0.0004
33 1 2.1958 1.5430 2.4033
34 1 0.7988 2.3496 1.6510
35 1 2.2711 4.1996 0.9025
36 1 3.6677 3.3924 1.6550
37 1 3.3567 5.8356 2.7486
38 1 2.7419 5.3422 5.4609
39 1 1.3465 6.1500 4.7070
40 1 2.8195 7.9989 3.9593
41 1 4.2154 7.1916 4.7130
42 1 0.6923 7.7571 6.6462
43 1 0.9693 8.6033 5.0982
44 1 1.5427 12.9794 8.6468
45 1 2.8502 11.1566 7.1931
46 1 2.8062 9.7553 8.3064
47 1 4.7853 8.4441 7.8992
48 1 5.5658 8.4358 6.2995
49 1 5.4371 9.9543 7.2192
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001102977370.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:14:32
Heat of formation + Delta-G solvation = -98.175104 kcal
Electronic energy + Delta-G solvation = -28113.679182 eV
Core-core repulsion = 24010.186067 eV
Total energy + Delta-G solvation = -4103.493115 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 347.171 amu
Computer time = 0.74 seconds
Orbital eigenvalues (eV)
-39.99334 -38.19359 -37.57578 -36.43754 -35.50886 -35.40867 -33.69085 -33.24142
-31.15661 -30.67759 -27.29660 -26.50593 -25.88244 -25.21697 -23.82328 -22.02458
-20.81416 -19.84846 -19.67983 -19.25933 -18.45987 -17.62231 -16.92111 -16.84812
-16.43743 -16.19255 -15.92471 -15.48767 -15.10989 -14.68955 -14.40404 -14.17257
-13.95687 -13.66954 -13.45730 -13.34592 -13.07141 -12.97670 -12.83053 -12.57065
-12.46510 -12.17778 -12.10988 -12.07785 -11.93836 -11.67533 -11.50692 -11.36353
-11.14183 -11.04149 -10.86187 -10.74197 -10.27597 -10.13367 -10.06322 -9.90139
-9.82129 -9.71664 -9.33083 -9.22435 -8.63379 -6.80804 -5.63621 -3.05113
-0.25906 2.19928 2.35835 2.89978 3.31200 3.41082 3.45147 3.46501
3.73196 3.86857 4.29489 4.40947 4.48156 4.50220 4.81200 4.89233
4.90745 4.94028 5.06910 5.17062 5.22691 5.26133 5.31879 5.45099
5.51832 5.54646 5.64776 5.74412 5.90616 5.95412 6.11624 6.21241
6.25328 6.29038 6.33408 6.37675 6.55326 6.61400 6.68585 6.82718
7.01392 7.25764 7.56229 7.64723 7.88229 7.96190 8.38502 9.24230
9.85205 10.50658 11.39981
Molecular weight = 347.17amu
Principal moments of inertia in cm(-1)
A = 0.019487 B = 0.001702 C = 0.001607
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1436.505506 B =16450.429927 C =17416.131807
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.079 3.921
2 N -1.123 6.123
3 S 2.615 3.385
4 O -0.953 6.953
5 O -0.957 6.957
6 C -0.613 4.613
7 C -0.136 4.136
8 C 0.518 3.482
9 O -0.536 6.536
10 N -0.727 5.727
11 C 0.117 3.883
12 C -0.117 4.117
13 C -0.093 4.093
14 H 0.072 0.928
15 C 0.140 3.860
16 N -0.606 5.606
17 C -0.222 4.222
18 H 0.076 0.924
19 C -0.013 4.013
20 N -0.923 5.923
21 Si 0.914 3.086
22 H -0.286 1.286
23 H -0.290 1.290
24 H -0.285 1.285
25 C 0.159 3.841
26 C -0.115 4.115
27 H 0.068 0.932
28 C -0.133 4.133
29 H 0.069 0.931
30 H 0.083 0.917
31 H 0.062 0.938
32 H 0.418 0.582
33 H 0.142 0.858
34 H 0.140 0.860
35 H 0.111 0.889
36 H 0.110 0.890
37 H 0.402 0.598
38 H 0.068 0.932
39 H 0.073 0.927
40 H 0.070 0.930
41 H 0.066 0.934
42 H 0.019 0.981
43 H 0.022 0.978
44 H 0.252 0.748
45 H 0.105 0.895
46 H 0.011 0.989
47 H 0.050 0.950
48 H 0.042 0.958
49 H 0.053 0.947
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.928 -22.896 -15.703 28.197
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.067 4.067
2 N -0.882 5.882
3 S 2.706 3.294
4 O -0.942 6.942
5 O -0.947 6.947
6 C -0.742 4.742
7 C -0.178 4.178
8 C 0.303 3.697
9 O -0.413 6.413
10 N -0.378 5.378
11 C -0.006 4.006
12 C -0.155 4.155
13 C -0.112 4.112
14 H 0.091 0.909
15 C 0.014 3.986
16 N -0.331 5.331
17 C -0.350 4.350
18 H 0.094 0.906
19 C -0.208 4.208
20 N -0.571 5.571
21 Si 0.745 3.255
22 H -0.212 1.212
23 H -0.216 1.216
24 H -0.212 1.212
25 C 0.034 3.966
26 C -0.135 4.135
27 H 0.086 0.914
28 C -0.191 4.191
29 H 0.088 0.912
30 H 0.102 0.898
31 H 0.080 0.920
32 H 0.252 0.748
33 H 0.160 0.840
34 H 0.158 0.842
35 H 0.129 0.871
36 H 0.128 0.872
37 H 0.236 0.764
38 H 0.086 0.914
39 H 0.091 0.909
40 H 0.089 0.911
41 H 0.085 0.915
42 H 0.037 0.963
43 H 0.040 0.960
44 H 0.063 0.937
45 H 0.122 0.878
46 H 0.029 0.971
47 H 0.069 0.931
48 H 0.061 0.939
49 H 0.072 0.928
Dipole moment (debyes) X Y Z Total
from point charges 4.722 -22.621 -15.725 27.951
hybrid contribution -0.760 0.305 0.659 1.051
sum 3.962 -22.316 -15.066 27.215
Atomic orbital electron populations
1.21547 0.78522 1.04478 1.02177 1.55352 1.16129 1.24560 1.92178
1.04910 0.73709 0.73973 0.76767 1.93619 1.78786 1.72300 1.49543
1.93622 1.32646 1.81201 1.87216 1.30404 1.11974 1.07598 1.24204
1.21363 1.02743 0.94990 0.98672 1.20158 0.80466 0.81257 0.87862
1.90723 1.36026 1.62602 1.51937 1.46075 1.50098 1.20351 1.21311
1.21548 1.00947 0.94024 0.84118 1.21799 0.99950 0.94641 0.99098
1.22153 0.96976 0.96828 0.95262 0.90941 1.21373 0.93118 0.88702
0.95444 1.44497 1.05349 1.18463 1.64804 1.19038 0.86994 0.99362
1.29619 0.90629 1.24789 0.97178 0.98194 1.00636 1.69791 1.21530
1.22952 1.42874 0.86152 0.81834 0.79766 0.77749 1.21247 1.21584
1.21200 1.21967 0.81512 1.00941 0.92204 1.22633 0.94687 0.95726
1.00410 0.91371 1.21633 0.96651 1.00942 0.99860 0.91197 0.89842
0.91975 0.74762 0.84016 0.84179 0.87123 0.87184 0.76399 0.91390
0.90871 0.91117 0.91522 0.96340 0.96022 0.93736 0.87753 0.97091
0.93095 0.93870 0.92780
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.08 0.26 11.03 59.85 0.66 0.92 16
2 N -1.12 -5.02 6.08 -16.64 -0.10 -5.12 16
3 S 2.62 17.49 5.46 -107.50 -0.59 16.90 16
4 O -0.95 -9.54 17.73 -57.54 -1.02 -10.56 16
5 O -0.96 -9.27 18.08 -57.54 -1.04 -10.31 16
6 C -0.61 -3.71 5.31 37.16 0.20 -3.51 16
7 C -0.14 -0.91 5.71 -27.88 -0.16 -1.07 16
8 C 0.52 5.45 7.83 -10.98 -0.09 5.37 16
9 O -0.54 -7.76 15.98 5.56 0.09 -7.67 16
10 N -0.73 -6.94 5.56 -60.30 -0.33 -7.27 16
11 C 0.12 1.40 5.56 -4.04 -0.02 1.38 16
12 C -0.12 -1.42 4.73 -26.73 -0.13 -1.55 16
13 C -0.09 -1.52 2.39 -88.78 -0.21 -1.73 16
14 H 0.07 1.17 8.01 -51.93 -0.42 0.76 16
15 C 0.14 2.88 6.24 -3.06 -0.02 2.86 16
16 N -0.61 -15.56 3.39 -170.06 -0.58 -16.14 16
17 C -0.22 -6.24 10.27 -15.06 -0.15 -6.39 16
18 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16
19 C -0.01 -0.36 5.49 -17.43 -0.10 -0.45 16
20 N -0.92 -26.95 10.09 55.49 0.56 -26.39 16
21 Si 0.91 22.21 29.55 -169.99 -5.02 17.19 16
22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16
23 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16
24 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16
25 C 0.16 3.81 5.36 -2.53 -0.01 3.79 16
26 C -0.11 -2.07 3.09 -88.47 -0.27 -2.34 16
27 H 0.07 1.23 8.05 -51.93 -0.42 0.81 16
28 C -0.13 -1.99 9.30 37.16 0.35 -1.65 16
29 H 0.07 0.27 8.04 -51.93 -0.42 -0.14 16
30 H 0.08 0.12 8.14 -51.93 -0.42 -0.30 16
31 H 0.06 0.14 7.73 -51.93 -0.40 -0.26 16
32 H 0.42 1.24 8.92 -34.47 -0.31 0.93 16
33 H 0.14 0.78 8.10 -51.93 -0.42 0.36 16
34 H 0.14 0.78 7.73 -51.93 -0.40 0.38 16
35 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16
36 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16
37 H 0.40 2.61 8.47 -40.82 -0.35 2.26 16
38 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16
39 H 0.07 1.02 7.68 -51.93 -0.40 0.62 16
40 H 0.07 0.87 7.94 -51.93 -0.41 0.46 16
41 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16
42 H 0.02 0.39 8.14 -51.92 -0.42 -0.03 16
43 H 0.02 0.44 7.69 -51.93 -0.40 0.04 16
44 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16
45 H 0.10 2.84 5.87 -51.93 -0.31 2.53 16
46 H 0.01 0.29 8.04 -51.93 -0.42 -0.13 16
47 H 0.05 0.76 8.11 -51.93 -0.42 0.34 16
48 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16
49 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16
LS Contribution 407.21 15.07 6.14 6.14
Total: -1.00 -38.42 407.21 -10.27 -48.69
By element:
Atomic # 1 Polarization: 7.35 SS G_CDS: -8.41 Total: -1.06 kcal
Atomic # 6 Polarization: -4.42 SS G_CDS: 0.04 Total: -4.38 kcal
Atomic # 7 Polarization: -54.48 SS G_CDS: -0.45 Total: -54.93 kcal
Atomic # 8 Polarization: -26.57 SS G_CDS: -1.97 Total: -28.54 kcal
Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal
Atomic # 16 Polarization: 17.49 SS G_CDS: -0.59 Total: 16.90 kcal
Total LS contribution 6.14 Total: 6.14 kcal
Total: -38.42 -10.27 -48.69 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001102977370.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -49.484 kcal
(2) G-P(sol) polarization free energy of solvation -38.423 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.907 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.268 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.691 kcal
(6) G-S(sol) free energy of system = (1) + (5) -98.175 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.74 seconds