Wall clock time and date at job start Wed Apr 1 2020 05:14:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46498 * 1
3 3 S 1.65600 * 120.00251 * 2 1
4 4 O 1.42094 * 104.27783 * 308.92857 * 3 2 1
5 5 O 1.42105 * 104.27515 * 181.07003 * 3 2 1
6 6 C 1.81405 * 104.44750 * 65.00173 * 3 2 1
7 7 C 1.53001 * 109.46629 * 179.97438 * 6 3 2
8 8 C 1.50704 * 109.46599 * 179.97438 * 7 6 3
9 9 O 1.21278 * 120.00132 * 0.02562 * 8 7 6
10 10 N 1.34777 * 119.99643 * 179.97438 * 8 7 6
11 11 C 1.46499 * 119.99790 * 179.97438 * 10 8 7
12 12 C 1.52998 * 109.47243 * 180.02562 * 11 10 8
13 13 C 1.53002 * 109.47515 * 180.02562 * 12 11 10
14 14 H 1.09000 * 110.63772 * 51.85599 * 13 12 11
15 15 C 1.54335 * 110.84636 * 288.69230 * 13 12 11
16 16 N 1.47022 * 107.26195 * 219.66998 * 15 13 12
17 17 C 1.36935 * 125.64427 * 178.84992 * 16 15 13
18 18 H 1.08000 * 120.00518 * 359.44761 * 17 16 15
19 19 C 1.38817 * 119.99990 * 179.71412 * 17 16 15
20 20 N 1.31617 * 119.99869 * 0.02562 * 19 17 16
21 21 Si 1.86800 * 119.99909 * 179.97438 * 19 17 16
22 22 H 1.48498 * 109.47028 * 60.00888 * 21 19 17
23 23 H 1.48503 * 109.46851 * 180.02562 * 21 19 17
24 24 H 1.48492 * 109.47412 * 300.00497 * 21 19 17
25 25 C 1.47426 * 108.70625 * 358.58545 * 16 15 13
26 26 C 1.54912 * 104.82994 * 24.35934 * 25 16 15
27 27 H 1.08995 * 111.00742 * 81.05954 * 26 25 16
28 28 C 1.52998 * 111.00086 * 204.87731 * 26 25 16
29 29 H 1.09003 * 109.47196 * 59.99673 * 1 2 3
30 30 H 1.08990 * 109.47919 * 179.97438 * 1 2 3
31 31 H 1.08998 * 109.47045 * 300.00497 * 1 2 3
32 32 H 0.97007 * 119.99705 * 179.97438 * 2 1 3
33 33 H 1.08997 * 109.47308 * 59.99962 * 6 3 2
34 34 H 1.08995 * 109.46739 * 299.99710 * 6 3 2
35 35 H 1.08997 * 109.47047 * 60.00119 * 7 6 3
36 36 H 1.08995 * 109.47582 * 299.99510 * 7 6 3
37 37 H 0.97000 * 120.00187 * 0.02562 * 10 8 7
38 38 H 1.09005 * 109.47065 * 60.00370 * 11 10 8
39 39 H 1.08992 * 109.47740 * 300.00587 * 11 10 8
40 40 H 1.09004 * 109.47529 * 60.00110 * 12 11 10
41 41 H 1.09005 * 109.47175 * 300.00548 * 12 11 10
42 42 H 1.09007 * 109.99076 * 100.19801 * 15 13 12
43 43 H 1.09002 * 109.78210 * 339.02796 * 15 13 12
44 44 H 0.96996 * 119.99743 * 179.97438 * 20 19 17
45 45 H 1.08998 * 110.36404 * 143.19245 * 25 16 15
46 46 H 1.08995 * 110.36566 * 265.51629 * 25 16 15
47 47 H 1.08996 * 109.47303 * 58.54471 * 28 26 25
48 48 H 1.09006 * 109.46537 * 178.54319 * 28 26 25
49 49 H 1.08996 * 109.47165 * 298.54472 * 28 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 16 2.2930 1.4341 0.0000
4 8 1.7189 2.1702 -1.0713
5 8 3.6607 1.0490 -0.0257
6 6 1.8765 2.1973 1.5921
7 6 2.5901 3.5452 1.7137
8 6 2.2436 4.1794 3.0361
9 8 1.4995 3.6093 3.8056
10 7 2.7613 5.3798 3.3639
11 6 2.4240 5.9967 4.6492
12 6 3.1377 7.3445 4.7709
13 6 2.7859 7.9885 6.1135
14 1 2.9639 7.2915 6.9324
15 6 1.3217 8.4763 6.1218
16 7 1.2961 9.7681 6.8234
17 6 0.1863 10.5442 7.0261
18 1 -0.7733 10.2235 6.6484
19 6 0.2957 11.7459 7.7123
20 7 1.4662 12.1396 8.1676
21 14 -1.2181 12.8050 7.9882
22 1 -2.2237 12.0380 8.7664
23 1 -0.8366 14.0272 8.7406
24 1 -1.7971 13.1921 6.6768
25 6 2.6619 10.0863 7.2780
26 6 3.5918 9.2979 6.3222
27 1 3.7246 9.8293 5.3798
28 6 4.9421 9.0125 6.9825
29 1 -0.3634 0.5139 -0.8900
30 1 -0.3634 -1.0275 -0.0005
31 1 -0.3633 0.5139 0.8899
32 1 1.9500 -0.8401 0.0004
33 1 2.1958 1.5430 2.4033
34 1 0.7988 2.3496 1.6510
35 1 2.2711 4.1996 0.9025
36 1 3.6677 3.3924 1.6550
37 1 3.3567 5.8356 2.7486
38 1 2.7419 5.3422 5.4609
39 1 1.3465 6.1500 4.7070
40 1 2.8195 7.9989 3.9593
41 1 4.2154 7.1916 4.7130
42 1 0.6923 7.7571 6.6462
43 1 0.9693 8.6033 5.0982
44 1 1.5427 12.9794 8.6468
45 1 2.8502 11.1566 7.1931
46 1 2.8062 9.7553 8.3064
47 1 4.7853 8.4441 7.8992
48 1 5.5658 8.4358 6.2995
49 1 5.4371 9.9543 7.2192
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001102977370.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:14:31
Heat of formation + Delta-G solvation = -129.249636 kcal
Electronic energy + Delta-G solvation = -28115.026675 eV
Core-core repulsion = 24010.186067 eV
Total energy + Delta-G solvation = -4104.840608 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 347.171 amu
Computer time = 0.92 seconds
Orbital eigenvalues (eV)
-40.84975 -39.72044 -38.21660 -37.08212 -36.52411 -35.85882 -35.00996 -34.26277
-32.54528 -32.34409 -28.67246 -27.53880 -26.80032 -26.32930 -25.13472 -23.37629
-21.67737 -21.33278 -20.63620 -20.30669 -19.04786 -18.86800 -18.21804 -17.46824
-17.21428 -17.01959 -16.82659 -16.71897 -16.21356 -15.76723 -15.59938 -15.34253
-14.89417 -14.62664 -14.57185 -14.33876 -14.15909 -13.76554 -13.74395 -13.50600
-13.47049 -13.34830 -13.24559 -13.13410 -12.85819 -12.76277 -12.72833 -12.57145
-12.45341 -12.39966 -12.18778 -11.97980 -11.95506 -11.78016 -11.43342 -11.26681
-11.14885 -10.86605 -10.72891 -10.44820 -10.10616 -8.87532 -7.77345 -5.21939
-0.78416 1.44469 1.47787 1.54252 1.57780 1.74610 2.16910 2.48822
2.77685 3.22510 3.30831 3.34027 3.71267 3.73643 3.83277 3.84091
3.92794 4.07899 4.21911 4.27120 4.34993 4.39999 4.50728 4.52391
4.63789 4.65507 4.74656 4.79884 4.81645 4.84096 4.93848 5.01675
5.03235 5.04955 5.12888 5.20312 5.29301 5.40520 5.44133 5.46071
5.55372 5.77080 5.85984 6.10993 6.32583 6.53551 7.11512 7.21947
7.79759 8.43650 9.23590
Molecular weight = 347.17amu
Principal moments of inertia in cm(-1)
A = 0.019487 B = 0.001702 C = 0.001607
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1436.505506 B =16450.429927 C =17416.131807
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.068 3.932
2 N -1.118 6.118
3 S 2.640 3.360
4 O -0.987 6.987
5 O -0.987 6.987
6 C -0.607 4.607
7 C -0.142 4.142
8 C 0.515 3.485
9 O -0.581 6.581
10 N -0.717 5.717
11 C 0.123 3.877
12 C -0.101 4.101
13 C -0.079 4.079
14 H 0.076 0.924
15 C 0.134 3.866
16 N -0.630 5.630
17 C -0.242 4.242
18 H 0.076 0.924
19 C -0.069 4.069
20 N -0.948 5.948
21 Si 0.980 3.020
22 H -0.280 1.280
23 H -0.292 1.292
24 H -0.276 1.276
25 C 0.159 3.841
26 C -0.101 4.101
27 H 0.072 0.928
28 C -0.127 4.127
29 H 0.062 0.938
30 H 0.104 0.896
31 H 0.073 0.927
32 H 0.426 0.574
33 H 0.148 0.852
34 H 0.145 0.855
35 H 0.132 0.868
36 H 0.136 0.864
37 H 0.420 0.580
38 H 0.063 0.937
39 H 0.049 0.951
40 H 0.074 0.926
41 H 0.099 0.901
42 H 0.010 0.990
43 H 0.026 0.974
44 H 0.247 0.753
45 H 0.068 0.932
46 H -0.019 1.019
47 H 0.047 0.953
48 H 0.081 0.919
49 H 0.049 0.951
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.715 -24.260 -17.164 30.262
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.078 4.078
2 N -0.880 5.880
3 S 2.732 3.268
4 O -0.977 6.977
5 O -0.977 6.977
6 C -0.737 4.737
7 C -0.183 4.183
8 C 0.301 3.699
9 O -0.461 6.461
10 N -0.369 5.369
11 C -0.001 4.001
12 C -0.139 4.139
13 C -0.098 4.098
14 H 0.095 0.905
15 C 0.009 3.991
16 N -0.356 5.356
17 C -0.371 4.371
18 H 0.094 0.906
19 C -0.261 4.261
20 N -0.597 5.597
21 Si 0.808 3.192
22 H -0.207 1.207
23 H -0.217 1.217
24 H -0.202 1.202
25 C 0.034 3.966
26 C -0.121 4.121
27 H 0.090 0.910
28 C -0.184 4.184
29 H 0.080 0.920
30 H 0.122 0.878
31 H 0.091 0.909
32 H 0.262 0.738
33 H 0.166 0.834
34 H 0.163 0.837
35 H 0.150 0.850
36 H 0.154 0.846
37 H 0.257 0.743
38 H 0.081 0.919
39 H 0.067 0.933
40 H 0.093 0.907
41 H 0.117 0.883
42 H 0.028 0.972
43 H 0.044 0.956
44 H 0.056 0.944
45 H 0.086 0.914
46 H -0.001 1.001
47 H 0.066 0.934
48 H 0.100 0.900
49 H 0.069 0.931
Dipole moment (debyes) X Y Z Total
from point charges 5.538 -24.008 -17.241 30.072
hybrid contribution -1.069 0.692 1.149 1.715
sum 4.469 -23.316 -16.092 28.681
Atomic orbital electron populations
1.21768 0.77612 1.06008 1.02407 1.55124 1.16717 1.24138 1.91996
1.04009 0.72685 0.73790 0.76321 1.93575 1.79205 1.73432 1.51514
1.93576 1.34686 1.81762 1.87725 1.30348 1.12384 1.07520 1.23450
1.21537 1.04557 0.95255 0.96916 1.20774 0.79482 0.81030 0.88605
1.90707 1.38053 1.63762 1.53598 1.45931 1.50073 1.20186 1.20717
1.21288 0.99467 0.94034 0.85332 1.21645 1.01842 0.94148 0.96279
1.22060 0.93370 0.96229 0.98176 0.90524 1.21581 0.96300 0.86562
0.94691 1.44855 1.05421 1.20118 1.65166 1.19409 0.88060 1.00036
1.29563 0.90580 1.25647 1.00094 0.99528 1.00848 1.70063 1.23275
1.22969 1.43413 0.85127 0.78489 0.77757 0.77808 1.20664 1.21747
1.20194 1.21787 0.82619 0.99780 0.92385 1.22475 0.95180 0.95398
0.99007 0.90976 1.21594 0.95050 1.01405 1.00375 0.91968 0.87754
0.90855 0.73799 0.83352 0.83675 0.84994 0.84617 0.74304 0.91885
0.93304 0.90725 0.88292 0.97223 0.95583 0.94351 0.91372 1.00075
0.93386 0.90016 0.93142
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.07 0.35 11.03 127.77 1.41 1.76 16
2 N -1.12 -8.41 6.08 -206.55 -1.25 -9.66 16
3 S 2.64 31.74 5.46 -56.49 -0.31 31.43 16
4 O -0.99 -18.81 17.73 -127.65 -2.26 -21.07 16
5 O -0.99 -17.89 18.08 -127.65 -2.31 -20.20 16
6 C -0.61 -6.20 5.31 71.98 0.38 -5.82 16
7 C -0.14 -1.53 5.71 29.85 0.17 -1.36 16
8 C 0.51 9.77 7.83 87.66 0.69 10.46 16
9 O -0.58 -16.23 15.98 -3.02 -0.05 -16.28 16
10 N -0.72 -11.74 5.56 -463.07 -2.57 -14.31 16
11 C 0.12 2.70 5.56 86.38 0.48 3.18 16
12 C -0.10 -2.15 4.73 30.59 0.14 -2.01 16
13 C -0.08 -2.46 2.39 -9.60 -0.02 -2.48 16
14 H 0.08 2.35 8.01 -2.39 -0.02 2.33 16
15 C 0.13 5.54 6.24 86.73 0.54 6.08 16
16 N -0.63 -33.22 3.39 -691.95 -2.35 -35.56 16
17 C -0.24 -13.93 10.27 84.04 0.86 -13.07 16
18 H 0.08 4.23 7.83 -2.91 -0.02 4.21 16
19 C -0.07 -3.98 5.49 84.86 0.47 -3.51 16
20 N -0.95 -57.26 10.09 21.65 0.22 -57.04 16
21 Si 0.98 46.45 29.55 68.60 2.03 48.47 16
22 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16
23 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16
24 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16
25 C 0.16 7.88 5.36 86.86 0.47 8.35 16
26 C -0.10 -3.52 3.09 -9.40 -0.03 -3.55 16
27 H 0.07 2.47 8.05 -2.39 -0.02 2.46 16
28 C -0.13 -3.49 9.30 71.98 0.67 -2.83 16
29 H 0.06 0.43 8.04 -2.39 -0.02 0.41 16
30 H 0.10 0.10 8.14 -2.39 -0.02 0.08 16
31 H 0.07 0.21 7.73 -2.39 -0.02 0.19 16
32 H 0.43 1.90 8.92 -96.74 -0.86 1.04 16
33 H 0.15 1.36 8.10 -2.39 -0.02 1.34 16
34 H 0.15 1.37 7.73 -2.39 -0.02 1.35 16
35 H 0.13 0.88 8.14 -2.39 -0.02 0.86 16
36 H 0.14 0.78 8.14 -2.39 -0.02 0.76 16
37 H 0.42 3.87 8.47 -92.71 -0.79 3.08 16
38 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16
39 H 0.05 1.32 7.68 -2.39 -0.02 1.30 16
40 H 0.07 1.59 7.94 -2.38 -0.02 1.57 16
41 H 0.10 1.56 8.14 -2.38 -0.02 1.54 16
42 H 0.01 0.42 8.14 -2.38 -0.02 0.40 16
43 H 0.03 1.06 7.69 -2.39 -0.02 1.04 16
44 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16
45 H 0.07 3.87 5.87 -2.39 -0.01 3.86 16
46 H -0.02 -1.01 8.04 -2.39 -0.02 -1.03 16
47 H 0.05 1.35 8.11 -2.39 -0.02 1.33 16
48 H 0.08 1.66 8.14 -2.38 -0.02 1.65 16
49 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16
Total: -1.00 -86.47 407.21 -3.33 -89.80
By element:
Atomic # 1 Polarization: 9.91 SS G_CDS: -0.70 Total: 9.22 kcal
Atomic # 6 Polarization: -11.03 SS G_CDS: 6.23 Total: -4.80 kcal
Atomic # 7 Polarization: -110.62 SS G_CDS: -5.96 Total: -116.58 kcal
Atomic # 8 Polarization: -52.92 SS G_CDS: -4.62 Total: -57.54 kcal
Atomic # 14 Polarization: 46.45 SS G_CDS: 2.03 Total: 48.47 kcal
Atomic # 16 Polarization: 31.74 SS G_CDS: -0.31 Total: 31.43 kcal
Total: -86.47 -3.33 -89.80 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001102977370.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -39.448 kcal
(2) G-P(sol) polarization free energy of solvation -86.472 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.920 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.330 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.802 kcal
(6) G-S(sol) free energy of system = (1) + (5) -129.250 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.92 seconds