Wall clock time and date at job start Wed Apr 1 2020 05:14:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.46977 * 2 1 4 4 N 1.46491 * 109.47080 * 239.99977 * 2 1 3 5 5 S 1.65606 * 120.00402 * 95.00162 * 4 2 1 6 6 C 1.81399 * 104.44745 * 64.99576 * 5 4 2 7 7 O 1.42097 * 104.28244 * 181.07106 * 5 4 2 8 8 O 1.42106 * 104.27316 * 308.92775 * 5 4 2 9 9 C 1.50700 * 109.47151 * 119.99707 * 2 1 3 10 10 O 1.21279 * 119.99595 * 120.00162 * 9 2 1 11 11 N 1.34776 * 119.99911 * 300.00121 * 9 2 1 12 12 C 1.46502 * 119.99595 * 180.02562 * 11 9 2 13 13 C 1.52998 * 109.46927 * 180.02562 * 12 11 9 14 14 C 1.53004 * 109.47329 * 179.97438 * 13 12 11 15 15 H 1.09000 * 110.63496 * 51.85607 * 14 13 12 16 16 C 1.54335 * 111.00070 * 288.78062 * 14 13 12 17 17 N 1.47022 * 107.26195 * 219.59791 * 16 14 13 18 18 C 1.36935 * 125.64427 * 178.84992 * 17 16 14 19 19 H 1.08000 * 120.00518 * 359.44761 * 18 17 16 20 20 C 1.38817 * 119.99990 * 179.71412 * 18 17 16 21 21 N 1.31617 * 119.99869 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99909 * 179.97438 * 20 18 17 23 23 H 1.48508 * 109.46676 * 90.00727 * 22 20 18 24 24 H 1.48502 * 109.46977 * 210.00025 * 22 20 18 25 25 H 1.48494 * 109.47494 * 330.00753 * 22 20 18 26 26 C 1.47426 * 108.70625 * 358.58545 * 17 16 14 27 27 C 1.54912 * 104.82994 * 24.35934 * 26 17 16 28 28 H 1.09002 * 111.00798 * 81.09539 * 27 26 17 29 29 C 1.52999 * 111.00381 * 204.91502 * 27 26 17 30 30 H 1.09004 * 109.47315 * 300.00001 * 1 2 3 31 31 H 1.09000 * 109.47442 * 59.99953 * 1 2 3 32 32 H 1.09001 * 109.47494 * 179.97438 * 1 2 3 33 33 H 0.96997 * 120.00179 * 274.99624 * 4 2 1 34 34 H 1.08998 * 109.47193 * 60.00653 * 6 5 4 35 35 H 1.09007 * 109.46999 * 180.02562 * 6 5 4 36 36 H 1.09000 * 109.47690 * 300.00032 * 6 5 4 37 37 H 0.96996 * 120.00291 * 359.97438 * 11 9 2 38 38 H 1.08996 * 109.47340 * 59.99883 * 12 11 9 39 39 H 1.09001 * 109.46732 * 299.99547 * 12 11 9 40 40 H 1.09009 * 109.47376 * 59.99980 * 13 12 11 41 41 H 1.09003 * 109.47168 * 299.99799 * 13 12 11 42 42 H 1.09007 * 109.99076 * 100.12594 * 16 14 13 43 43 H 1.09002 * 109.78210 * 338.95588 * 16 14 13 44 44 H 0.96996 * 119.99743 * 179.97438 * 21 20 18 45 45 H 1.08998 * 110.36404 * 143.19245 * 26 17 16 46 46 H 1.08995 * 110.36566 * 265.51629 * 26 17 16 47 47 H 1.09005 * 109.46589 * 58.54331 * 29 27 26 48 48 H 1.08990 * 109.47291 * 178.54164 * 29 27 26 49 49 H 1.09000 * 109.47086 * 298.54970 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1961 5 16 2.4122 0.1771 -2.5505 6 6 3.8313 1.1872 -2.0440 7 8 2.8122 -0.8076 -3.4936 8 8 1.2750 0.9966 -2.7846 9 6 2.0323 -0.7103 1.2305 10 8 2.7296 -1.6964 1.1192 11 7 1.7067 -0.2498 2.4546 12 6 2.1955 -0.9401 3.6507 13 6 1.6849 -0.2193 4.8999 14 6 2.1949 -0.9405 6.1493 15 1 3.2750 -1.0780 6.0994 16 6 1.4846 -2.2984 6.3327 17 7 1.2263 -2.4649 7.7704 18 6 0.5908 -3.5312 8.3487 19 1 0.2233 -4.3393 7.7337 20 6 0.4141 -3.5707 9.7250 21 7 0.8568 -2.5831 10.4740 22 14 -0.4534 -5.0249 10.5139 23 1 0.5452 -6.0676 10.8619 24 1 -1.1506 -4.5764 11.7460 25 1 -1.4441 -5.5867 9.5610 26 6 1.7702 -1.2970 8.4869 27 6 1.7990 -0.1628 7.4322 28 1 0.8158 0.2954 7.3242 29 6 2.8545 0.8873 7.7846 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 2.1110 -1.6561 -1.1948 34 1 4.6459 0.5362 -1.7268 35 1 4.1605 1.7985 -2.8844 36 1 3.5400 1.8343 -1.2167 37 1 1.1493 0.5390 2.5436 38 1 3.2855 -0.9397 3.6506 39 1 1.8325 -1.9679 3.6509 40 1 0.5948 -0.2201 4.8999 41 1 2.0475 0.8087 4.9000 42 1 2.1248 -3.1050 5.9752 43 1 0.5427 -2.2991 5.7842 44 1 0.7330 -2.6106 11.4356 45 1 1.1198 -1.0254 9.3184 46 1 2.7778 -1.5074 8.8454 47 1 3.8337 0.4121 7.8445 48 1 2.8713 1.6583 7.0145 49 1 2.6105 1.3392 8.7460 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001103471038.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:34 Heat of formation + Delta-G solvation = -123.909257 kcal Electronic energy + Delta-G solvation = -28713.421565 eV Core-core repulsion = 24608.812533 eV Total energy + Delta-G solvation = -4104.609032 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.01557 -39.72431 -38.19409 -37.04885 -36.73117 -36.22610 -35.01494 -32.61045 -32.50426 -30.73838 -30.27749 -28.43673 -27.40598 -25.91628 -24.83713 -23.35963 -21.59294 -21.33288 -20.64306 -20.50069 -19.12588 -18.86321 -18.12339 -17.35823 -17.18780 -17.00112 -16.58205 -16.51798 -16.00859 -15.76840 -15.43866 -15.12235 -14.77348 -14.55859 -14.16953 -14.14735 -14.00122 -13.95939 -13.69344 -13.51310 -13.37577 -13.33839 -13.19596 -13.09232 -12.85729 -12.77986 -12.74406 -12.70455 -12.62918 -12.36789 -12.16046 -12.04719 -11.94484 -11.76775 -11.39920 -11.23778 -11.11347 -10.91269 -10.74032 -10.47201 -10.06981 -8.86655 -7.77238 -5.21501 -0.69408 1.44792 1.46491 1.55273 1.55813 1.62221 2.21185 2.48884 2.89004 3.25383 3.31190 3.54809 3.74250 3.76383 3.87776 3.95529 4.03180 4.06105 4.10637 4.18511 4.30002 4.38772 4.41549 4.55234 4.66585 4.77567 4.82591 4.86021 4.86906 4.93885 5.03387 5.04207 5.08656 5.15748 5.23883 5.31864 5.34248 5.42714 5.45876 5.48444 5.57977 5.79250 5.87338 5.92782 6.33553 6.56809 7.12297 7.23107 7.80677 8.44124 9.23836 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.021704 B = 0.001843 C = 0.001761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.804825 B =15190.749256 C =15892.491025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.135 3.865 3 H 0.149 0.851 4 N -1.108 6.108 5 S 2.624 3.376 6 C -0.658 4.658 7 O -1.002 7.002 8 O -0.983 6.983 9 C 0.505 3.495 10 O -0.574 6.574 11 N -0.709 5.709 12 C 0.124 3.876 13 C -0.101 4.101 14 C -0.078 4.078 15 H 0.076 0.924 16 C 0.133 3.867 17 N -0.631 5.631 18 C -0.239 4.239 19 H 0.076 0.924 20 C -0.068 4.068 21 N -0.947 5.947 22 Si 0.978 3.022 23 H -0.288 1.288 24 H -0.291 1.291 25 H -0.270 1.270 26 C 0.158 3.842 27 C -0.100 4.100 28 H 0.073 0.927 29 C -0.127 4.127 30 H 0.098 0.902 31 H 0.083 0.917 32 H 0.054 0.946 33 H 0.422 0.578 34 H 0.140 0.860 35 H 0.150 0.850 36 H 0.153 0.847 37 H 0.420 0.580 38 H 0.065 0.935 39 H 0.046 0.954 40 H 0.074 0.926 41 H 0.102 0.898 42 H 0.009 0.991 43 H 0.026 0.974 44 H 0.247 0.753 45 H 0.068 0.932 46 H -0.019 1.019 47 H 0.046 0.954 48 H 0.083 0.917 49 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.156 16.092 -23.282 28.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.024 3.976 3 H 0.166 0.834 4 N -0.866 5.866 5 S 2.720 3.280 6 C -0.811 4.811 7 O -0.992 6.992 8 O -0.973 6.973 9 C 0.290 3.710 10 O -0.453 6.453 11 N -0.362 5.362 12 C -0.001 4.001 13 C -0.139 4.139 14 C -0.098 4.098 15 H 0.094 0.906 16 C 0.008 3.992 17 N -0.356 5.356 18 C -0.369 4.369 19 H 0.094 0.906 20 C -0.261 4.261 21 N -0.597 5.597 22 Si 0.807 3.193 23 H -0.216 1.216 24 H -0.217 1.217 25 H -0.195 1.195 26 C 0.033 3.967 27 C -0.120 4.120 28 H 0.091 0.909 29 C -0.184 4.184 30 H 0.116 0.884 31 H 0.102 0.898 32 H 0.073 0.927 33 H 0.258 0.742 34 H 0.159 0.841 35 H 0.168 0.832 36 H 0.172 0.828 37 H 0.258 0.742 38 H 0.083 0.917 39 H 0.065 0.935 40 H 0.093 0.907 41 H 0.120 0.880 42 H 0.027 0.973 43 H 0.044 0.956 44 H 0.056 0.944 45 H 0.086 0.914 46 H -0.001 1.001 47 H 0.065 0.935 48 H 0.102 0.898 49 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 4.096 15.443 -24.016 28.845 hybrid contribution -0.032 -1.415 1.458 2.032 sum 4.065 14.028 -22.558 26.873 Atomic orbital electron populations 1.22341 0.91789 1.03546 1.05303 1.20842 0.96823 0.97470 0.82460 0.83369 1.55472 1.82166 1.20403 1.28561 1.04311 0.76845 0.74432 0.72419 1.30388 1.19512 1.16457 1.14789 1.93576 1.85181 1.59748 1.60739 1.93587 1.48607 1.70916 1.84163 1.21132 0.79722 0.84564 0.85615 1.90723 1.39578 1.27917 1.87110 1.45860 1.53274 1.32419 1.04658 1.21286 0.99124 0.95960 0.83684 1.21645 1.01583 1.00174 0.90464 1.22057 0.99505 0.93478 0.94741 0.90565 1.21590 0.96567 0.96075 0.84949 1.44871 1.66869 1.21313 1.02576 1.19437 1.28600 0.97904 0.90919 0.90632 1.25624 1.02620 1.01212 0.96634 1.70068 1.52640 1.32933 1.04096 0.85076 0.78033 0.78455 0.77762 1.21565 1.21693 1.19524 1.21800 0.94883 0.85205 0.94812 1.22467 0.99433 0.95392 0.94670 0.90888 1.21596 0.97246 0.97856 1.01718 0.88369 0.89831 0.92671 0.74243 0.84134 0.83218 0.82842 0.74199 0.91684 0.93534 0.90685 0.87973 0.97338 0.95564 0.94369 0.91429 1.00147 0.93460 0.89788 0.93266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.66 9.41 71.98 0.68 -0.99 16 2 C 0.14 1.36 3.09 44.25 0.14 1.50 16 3 H 0.15 0.21 7.15 -2.39 -0.02 0.19 16 4 N -1.11 -14.31 5.15 -172.54 -0.89 -15.20 16 5 S 2.62 31.85 6.02 -56.49 -0.34 31.51 16 6 C -0.66 -2.17 10.78 113.37 1.22 -0.95 16 7 O -1.00 -21.44 18.08 -127.65 -2.31 -23.75 16 8 O -0.98 -16.84 17.11 -127.65 -2.18 -19.03 16 9 C 0.50 8.38 7.22 87.66 0.63 9.01 16 10 O -0.57 -15.01 15.99 -3.03 -0.05 -15.06 16 11 N -0.71 -9.39 5.45 -463.07 -2.52 -11.92 16 12 C 0.12 2.41 5.56 86.38 0.48 2.89 16 13 C -0.10 -1.90 4.74 30.59 0.14 -1.76 16 14 C -0.08 -2.32 2.38 -9.60 -0.02 -2.34 16 15 H 0.08 2.22 8.01 -2.39 -0.02 2.20 16 16 C 0.13 5.38 6.25 86.73 0.54 5.93 16 17 N -0.63 -32.80 3.39 -691.95 -2.35 -35.15 16 18 C -0.24 -13.70 10.27 84.04 0.86 -12.84 16 19 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 20 C -0.07 -3.94 5.49 84.86 0.47 -3.47 16 21 N -0.95 -56.88 10.09 21.65 0.22 -56.66 16 22 Si 0.98 46.25 29.55 68.60 2.03 48.28 16 23 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 24 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 25 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 26 C 0.16 7.68 5.36 86.86 0.47 8.15 16 27 C -0.10 -3.35 3.09 -9.40 -0.03 -3.37 16 28 H 0.07 2.39 8.05 -2.39 -0.02 2.37 16 29 C -0.13 -3.30 9.29 71.98 0.67 -2.63 16 30 H 0.10 0.46 7.57 -2.38 -0.02 0.44 16 31 H 0.08 0.92 7.42 -2.39 -0.02 0.90 16 32 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.42 6.62 8.17 -96.75 -0.79 5.83 16 34 H 0.14 0.41 8.14 -2.39 -0.02 0.39 16 35 H 0.15 0.05 8.14 -2.39 -0.02 0.03 16 36 H 0.15 -0.24 7.44 -2.39 -0.02 -0.26 16 37 H 0.42 2.44 7.89 -92.71 -0.73 1.71 16 38 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.05 1.18 7.69 -2.39 -0.02 1.16 16 40 H 0.07 1.43 7.95 -2.38 -0.02 1.41 16 41 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.01 0.36 8.14 -2.38 -0.02 0.34 16 43 H 0.03 1.04 7.70 -2.39 -0.02 1.02 16 44 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 45 H 0.07 3.79 5.87 -2.39 -0.01 3.77 16 46 H -0.02 -1.04 8.04 -2.39 -0.02 -1.05 16 47 H 0.05 1.27 8.11 -2.38 -0.02 1.25 16 48 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 49 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -86.72 403.43 -2.71 -89.43 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -0.57 Total: 8.41 kcal Atomic # 6 Polarization: -7.12 SS G_CDS: 6.25 Total: -0.87 kcal Atomic # 7 Polarization: -113.38 SS G_CDS: -5.54 Total: -118.92 kcal Atomic # 8 Polarization: -53.29 SS G_CDS: -4.54 Total: -57.83 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.28 kcal Atomic # 16 Polarization: 31.85 SS G_CDS: -0.34 Total: 31.51 kcal Total: -86.72 -2.71 -89.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103471038.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.475 kcal (2) G-P(sol) polarization free energy of solvation -86.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds