Wall clock time and date at job start Wed Apr 1 2020 05:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 S 1.65598 * 120.00122 * 2 1 4 4 O 1.42102 * 104.27720 * 308.92292 * 3 2 1 5 5 O 1.42105 * 104.27887 * 181.07053 * 3 2 1 6 6 C 1.81395 * 104.45420 * 64.99616 * 3 2 1 7 7 C 1.52999 * 109.47406 * 179.97438 * 6 3 2 8 8 C 1.50701 * 109.47032 * 179.97438 * 7 6 3 9 9 O 1.21281 * 120.00382 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00149 * 180.02562 * 8 7 6 11 11 C 1.47431 * 125.64341 * 0.03974 * 10 8 7 12 12 C 1.54912 * 104.82949 * 204.09147 * 11 10 8 13 13 H 1.09000 * 111.00254 * 81.07017 * 12 11 10 14 14 C 1.53004 * 111.00695 * 204.91801 * 12 11 10 15 15 C 1.55156 * 101.58604 * 322.99608 * 12 11 10 16 16 H 1.09000 * 110.86864 * 277.06858 * 15 12 11 17 17 C 1.52992 * 110.72497 * 153.86469 * 15 12 11 18 18 C 1.52997 * 109.47482 * 180.02562 * 17 15 12 19 19 N 1.46505 * 109.47212 * 179.97438 * 18 17 15 20 20 C 1.36936 * 119.99992 * 179.97438 * 19 18 17 21 21 H 1.08006 * 119.99834 * 0.02562 * 20 19 18 22 22 C 1.38801 * 120.00093 * 180.02562 * 20 19 18 23 23 N 1.31622 * 120.00145 * 180.02562 * 22 20 19 24 24 Si 1.86803 * 120.00180 * 0.02562 * 22 20 19 25 25 H 1.48492 * 109.47586 * 89.99558 * 24 22 20 26 26 H 1.48505 * 109.47293 * 210.00502 * 24 22 20 27 27 H 1.48505 * 109.46772 * 329.99807 * 24 22 20 28 28 C 1.47023 * 125.65069 * 180.02562 * 10 8 7 29 29 H 1.08998 * 109.47425 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47144 * 300.00755 * 1 2 3 31 31 H 1.09000 * 109.46999 * 60.00290 * 1 2 3 32 32 H 0.97000 * 120.00222 * 179.97438 * 2 1 3 33 33 H 1.09002 * 109.46693 * 59.99832 * 6 3 2 34 34 H 1.09006 * 109.47181 * 300.00515 * 6 3 2 35 35 H 1.08998 * 109.46760 * 60.00404 * 7 6 3 36 36 H 1.08998 * 109.47181 * 299.99875 * 7 6 3 37 37 H 1.08992 * 110.37314 * 322.93281 * 11 10 8 38 38 H 1.09008 * 110.36286 * 85.14824 * 11 10 8 39 39 H 1.08997 * 109.47132 * 172.19914 * 14 12 11 40 40 H 1.09005 * 109.47105 * 292.20409 * 14 12 11 41 41 H 1.09001 * 109.46710 * 52.19730 * 14 12 11 42 42 H 1.09002 * 109.47103 * 60.02094 * 17 15 12 43 43 H 1.08998 * 109.46862 * 300.02906 * 17 15 12 44 44 H 1.09002 * 109.47153 * 59.99783 * 18 17 15 45 45 H 1.09001 * 109.46832 * 299.99974 * 18 17 15 46 46 H 0.96996 * 119.99606 * 0.02562 * 19 18 17 47 47 H 0.97010 * 119.99864 * 180.02562 * 23 22 20 48 48 H 1.08996 * 109.87920 * 59.56468 * 28 10 8 49 49 H 1.08996 * 109.88311 * 298.39002 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2930 1.4341 0.0000 4 8 1.7189 2.1702 -1.0714 5 8 3.6607 1.0492 -0.0257 6 6 1.8764 2.1975 1.5919 7 6 2.5900 3.5454 1.7135 8 6 2.2434 4.1798 3.0358 9 8 1.4993 3.6097 3.8054 10 7 2.7602 5.3806 3.3632 11 6 3.6726 6.1805 2.5257 12 6 4.4363 7.0856 3.5243 13 1 5.2573 6.5437 3.9938 14 6 4.9426 8.3554 2.8370 15 6 3.3263 7.4168 4.5565 16 1 2.7079 8.2447 4.2096 17 6 3.9355 7.7346 5.9235 18 6 2.8178 8.0558 6.9178 19 7 3.4012 8.3595 8.2269 20 6 2.5881 8.6791 9.2813 21 1 1.5166 8.7068 9.1479 22 6 3.1408 8.9674 10.5215 23 7 2.3592 9.2740 11.5351 24 14 4.9939 8.9202 10.7520 25 1 5.5630 10.2611 10.4636 26 1 5.3091 8.5393 12.1523 27 1 5.5829 7.9223 9.8231 28 6 2.5074 6.1100 4.6145 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.9500 -0.8400 0.0004 33 1 2.1958 1.5432 2.4031 34 1 0.7987 2.3498 1.6509 35 1 2.2710 4.1998 0.9023 36 1 3.6676 3.3926 1.6548 37 1 4.3679 5.5306 1.9946 38 1 3.1055 6.7865 1.8190 39 1 5.3520 9.0347 3.5846 40 1 5.7198 8.0945 2.1186 41 1 4.1165 8.8415 2.3179 42 1 4.6003 8.5938 5.8341 43 1 4.5010 6.8731 6.2783 44 1 2.1531 7.1966 7.0071 45 1 2.2523 8.9174 6.5628 46 1 4.3635 8.3350 8.3464 47 1 2.7455 9.4759 12.4018 48 1 2.8283 5.5089 5.4652 49 1 1.4458 6.3415 4.7006 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001104187211.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:12 Heat of formation + Delta-G solvation = -102.030943 kcal Electronic energy + Delta-G solvation = -28432.554417 eV Core-core repulsion = 24328.894100 eV Total energy + Delta-G solvation = -4103.660317 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.50276 -38.40282 -37.59485 -36.45776 -35.52068 -35.38084 -33.78371 -33.29327 -32.14166 -30.62817 -27.91107 -26.70912 -26.52031 -25.51492 -23.82249 -22.20739 -20.89744 -20.26570 -19.91386 -19.53660 -18.38290 -17.68912 -17.53879 -17.03619 -16.60056 -16.35976 -16.04068 -15.35628 -14.89152 -14.73425 -14.48579 -14.41072 -14.12301 -14.08912 -13.55102 -13.40056 -13.26687 -13.09925 -13.01052 -12.83846 -12.66573 -12.58891 -12.48609 -12.38946 -12.16544 -12.06795 -11.91769 -11.63662 -11.42785 -11.37708 -11.28710 -10.93536 -10.72227 -10.55635 -10.30715 -10.21894 -10.08556 -10.05048 -9.58780 -8.89463 -8.88510 -7.23216 -5.76508 -3.12174 -0.27956 2.17511 2.31761 2.65785 3.25387 3.36854 3.39153 3.44701 3.71143 3.84278 4.08251 4.20043 4.26034 4.43857 4.46777 4.56161 4.59016 4.76241 4.87540 4.90428 4.98219 5.10212 5.12566 5.15381 5.21058 5.21266 5.29695 5.32770 5.42953 5.52949 5.58294 5.62743 5.74497 5.84459 5.88780 5.90495 5.99024 6.08822 6.14124 6.26007 6.36473 6.70990 6.74751 7.22789 7.85685 7.99900 8.42486 9.21619 9.93915 10.13598 11.41927 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018643 B = 0.001889 C = 0.001792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.556534 B =14816.423666 C =15618.008585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -1.123 6.123 3 S 2.615 3.385 4 O -0.953 6.953 5 O -0.956 6.956 6 C -0.614 4.614 7 C -0.130 4.130 8 C 0.534 3.466 9 O -0.533 6.533 10 N -0.617 5.617 11 C 0.097 3.903 12 C -0.102 4.102 13 H 0.088 0.912 14 C -0.141 4.141 15 C -0.089 4.089 16 H 0.089 0.911 17 C -0.119 4.119 18 C 0.155 3.845 19 N -0.757 5.757 20 C -0.244 4.244 21 H 0.090 0.910 22 C 0.002 3.998 23 N -0.934 5.934 24 Si 0.886 3.114 25 H -0.284 1.284 26 H -0.291 1.291 27 H -0.278 1.278 28 C 0.110 3.890 29 H 0.083 0.917 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.419 0.581 33 H 0.143 0.857 34 H 0.140 0.860 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.065 0.935 40 H 0.057 0.943 41 H 0.059 0.941 42 H 0.069 0.931 43 H 0.064 0.936 44 H 0.027 0.973 45 H 0.027 0.973 46 H 0.360 0.640 47 H 0.259 0.741 48 H 0.076 0.924 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.298 -15.506 -29.151 33.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.882 5.882 3 S 2.706 3.294 4 O -0.943 6.943 5 O -0.946 6.946 6 C -0.743 4.743 7 C -0.172 4.172 8 C 0.321 3.679 9 O -0.410 6.410 10 N -0.351 5.351 11 C -0.026 4.026 12 C -0.121 4.121 13 H 0.106 0.894 14 C -0.199 4.199 15 C -0.109 4.109 16 H 0.108 0.892 17 C -0.158 4.158 18 C 0.028 3.972 19 N -0.403 5.403 20 C -0.374 4.374 21 H 0.108 0.892 22 C -0.193 4.193 23 N -0.582 5.582 24 Si 0.717 3.283 25 H -0.211 1.211 26 H -0.217 1.217 27 H -0.204 1.204 28 C -0.012 4.012 29 H 0.102 0.898 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.253 0.747 33 H 0.161 0.839 34 H 0.158 0.842 35 H 0.127 0.873 36 H 0.127 0.873 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.084 0.916 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.087 0.913 43 H 0.083 0.917 44 H 0.045 0.955 45 H 0.045 0.955 46 H 0.193 0.807 47 H 0.069 0.931 48 H 0.094 0.906 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.048 -15.385 -29.318 33.126 hybrid contribution 1.077 -0.391 1.075 1.571 sum 2.125 -15.776 -28.244 32.421 Atomic orbital electron populations 1.21550 0.78509 1.04517 1.02147 1.55343 1.16140 1.24551 1.92156 1.04909 0.73734 0.73998 0.76737 1.93615 1.78813 1.72331 1.49518 1.93625 1.32614 1.81179 1.87190 1.30429 1.11962 1.07577 1.24318 1.21327 1.02637 0.94820 0.98385 1.19794 0.80376 0.79827 0.87934 1.90739 1.36305 1.61882 1.52044 1.48506 1.47705 1.18704 1.20212 1.22555 0.92107 0.93995 0.93969 1.22438 0.97655 0.96550 0.95453 0.89383 1.21705 1.01184 0.96405 1.00573 1.22283 0.96004 0.96599 0.95993 0.89241 1.21784 0.99130 1.01837 0.93001 1.20667 0.93835 0.97754 0.84972 1.42713 1.05044 1.85392 1.07135 1.19069 0.91778 1.38780 0.87753 0.89244 1.24693 0.97243 1.01661 0.95747 1.69710 1.33599 1.53654 1.01283 0.86517 0.87034 0.77762 0.77019 1.21085 1.21727 1.20388 1.22162 1.00562 0.92400 0.86064 0.89802 0.91980 0.91204 0.74720 0.83921 0.84151 0.87279 0.87289 0.90489 0.90704 0.91578 0.92376 0.92228 0.91261 0.91728 0.95521 0.95528 0.80723 0.93074 0.90561 0.90932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.26 11.03 59.85 0.66 0.92 16 2 N -1.12 -5.11 6.08 -16.64 -0.10 -5.21 16 3 S 2.62 17.74 5.46 -107.50 -0.59 17.15 16 4 O -0.95 -9.37 17.73 -57.54 -1.02 -10.39 16 5 O -0.96 -9.40 18.08 -57.54 -1.04 -10.44 16 6 C -0.61 -3.91 5.31 37.16 0.20 -3.71 16 7 C -0.13 -0.96 4.71 -27.88 -0.13 -1.09 16 8 C 0.53 6.08 7.85 -10.99 -0.09 6.00 16 9 O -0.53 -8.12 16.31 5.56 0.09 -8.03 16 10 N -0.62 -6.55 3.33 -170.51 -0.57 -7.12 16 11 C 0.10 0.72 6.16 -2.52 -0.02 0.70 16 12 C -0.10 -0.84 3.09 -88.47 -0.27 -1.11 16 13 H 0.09 0.76 8.05 -51.93 -0.42 0.34 16 14 C -0.14 -0.96 9.31 37.16 0.35 -0.62 16 15 C -0.09 -0.96 2.45 -88.79 -0.22 -1.18 16 16 H 0.09 0.92 8.04 -51.93 -0.42 0.50 16 17 C -0.12 -1.65 4.71 -26.74 -0.13 -1.77 16 18 C 0.15 2.90 6.11 -4.04 -0.02 2.88 16 19 N -0.76 -18.08 5.41 -59.91 -0.32 -18.41 16 20 C -0.24 -7.01 10.47 -15.06 -0.16 -7.17 16 21 H 0.09 2.75 8.06 -52.48 -0.42 2.33 16 22 C 0.00 0.06 5.50 -17.43 -0.10 -0.03 16 23 N -0.93 -29.67 13.97 55.49 0.78 -28.90 16 24 Si 0.89 22.23 27.74 -169.99 -4.71 17.52 16 25 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 26 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 27 H -0.28 -6.54 6.52 56.52 0.37 -6.17 16 28 C 0.11 1.35 5.61 -3.06 -0.02 1.33 16 29 H 0.08 0.12 8.14 -51.93 -0.42 -0.30 16 30 H 0.06 0.14 7.73 -51.93 -0.40 -0.26 16 31 H 0.07 0.26 8.04 -51.93 -0.42 -0.16 16 32 H 0.42 1.29 8.92 -34.47 -0.31 0.98 16 33 H 0.14 0.86 8.10 -51.92 -0.42 0.44 16 34 H 0.14 0.79 7.73 -51.92 -0.40 0.39 16 35 H 0.11 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.11 0.60 7.85 -51.93 -0.41 0.19 16 37 H 0.08 0.42 7.48 -51.93 -0.39 0.03 16 38 H 0.07 0.46 7.99 -51.92 -0.41 0.05 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 41 H 0.06 0.38 8.08 -51.93 -0.42 -0.04 16 42 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.06 0.91 8.06 -51.93 -0.42 0.50 16 44 H 0.03 0.52 7.49 -51.93 -0.39 0.13 16 45 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.36 8.33 5.53 -40.82 -0.23 8.10 16 47 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 48 H 0.08 1.08 7.76 -51.93 -0.40 0.68 16 49 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 407.35 15.07 6.14 6.14 Total: -1.00 -40.00 407.35 -9.69 -49.70 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -8.40 Total: 2.84 kcal Atomic # 6 Polarization: -4.90 SS G_CDS: 0.06 Total: -4.84 kcal Atomic # 7 Polarization: -59.42 SS G_CDS: -0.22 Total: -59.64 kcal Atomic # 8 Polarization: -26.90 SS G_CDS: -1.97 Total: -28.86 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -4.71 Total: 17.52 kcal Atomic # 16 Polarization: 17.74 SS G_CDS: -0.59 Total: 17.15 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -40.00 -9.69 -49.70 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104187211.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.336 kcal (2) G-P(sol) polarization free energy of solvation -40.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds