Wall clock time and date at job start Wed Apr 1 2020 05:14:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 110.91255 * 2 1 4 4 C 1.54912 * 111.00695 * 236.10082 * 2 1 3 5 5 N 1.47431 * 104.82949 * 204.91801 * 4 2 1 6 6 C 1.34774 * 125.64341 * 204.09147 * 5 4 2 7 7 O 1.21281 * 119.99469 * 180.02562 * 6 5 4 8 8 C 1.50701 * 120.00149 * 0.03974 * 6 5 4 9 9 S 1.81403 * 109.46912 * 180.02562 * 8 6 5 10 10 O 1.42101 * 110.54420 * 291.62380 * 9 8 6 11 11 O 1.42097 * 110.54158 * 68.37496 * 9 8 6 12 12 N 1.65599 * 104.44801 * 179.97438 * 9 8 6 13 13 C 1.46500 * 120.00178 * 89.99838 * 12 9 8 14 14 C 1.46500 * 119.99869 * 270.00009 * 12 9 8 15 15 C 1.47023 * 108.70590 * 24.12456 * 5 4 2 16 16 C 1.54328 * 107.27043 * 358.94013 * 15 5 4 17 17 H 1.09000 * 110.71672 * 96.34629 * 16 15 5 18 18 C 1.52992 * 110.72106 * 219.44112 * 16 15 5 19 19 C 1.52997 * 109.47482 * 293.55011 * 18 16 15 20 20 N 1.46505 * 109.47212 * 179.97438 * 19 18 16 21 21 C 1.36936 * 119.99992 * 179.97438 * 20 19 18 22 22 H 1.08006 * 119.99834 * 0.02562 * 21 20 19 23 23 C 1.38801 * 120.00093 * 180.02562 * 21 20 19 24 24 N 1.31619 * 120.00176 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 120.00265 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.46951 * 89.99797 * 25 23 21 27 27 H 1.48500 * 109.47313 * 210.00112 * 25 23 21 28 28 H 1.48501 * 109.46991 * 330.00153 * 25 23 21 29 29 H 1.08997 * 109.47132 * 296.09832 * 1 2 3 30 30 H 1.09005 * 109.47105 * 56.10327 * 1 2 3 31 31 H 1.09001 * 109.46710 * 176.09648 * 1 2 3 32 32 H 1.08992 * 110.36783 * 86.07310 * 4 2 1 33 33 H 1.09008 * 110.45850 * 323.79680 * 4 2 1 34 34 H 1.08998 * 109.46992 * 299.99638 * 8 6 5 35 35 H 1.08998 * 109.47062 * 60.00236 * 8 6 5 36 36 H 1.09005 * 109.46818 * 0.02562 * 13 12 9 37 37 H 1.08997 * 109.46916 * 119.99846 * 13 12 9 38 38 H 1.08994 * 109.47301 * 239.99640 * 13 12 9 39 39 H 1.09004 * 109.47361 * 90.00292 * 14 12 9 40 40 H 1.08997 * 109.47278 * 210.00002 * 14 12 9 41 41 H 1.08999 * 109.47489 * 330.00164 * 14 12 9 42 42 H 1.08996 * 109.87920 * 239.53158 * 15 5 4 43 43 H 1.08996 * 109.88311 * 118.35693 * 15 5 4 44 44 H 1.09002 * 109.47103 * 173.54764 * 18 16 15 45 45 H 1.08998 * 109.46862 * 53.55576 * 18 16 15 46 46 H 1.09002 * 109.47153 * 59.99783 * 19 18 16 47 47 H 1.09001 * 109.46832 * 299.99974 * 19 18 16 48 48 H 0.96996 * 119.99606 * 0.02562 * 20 19 18 49 49 H 0.97001 * 120.00803 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0854 -0.8066 -1.2003 5 7 3.4273 -1.2430 -0.7732 6 6 4.4478 -1.5615 -1.5939 7 8 5.5128 -1.9098 -1.1300 8 6 4.2656 -1.4844 -3.0879 9 16 5.8070 -1.9713 -3.9109 10 8 6.8206 -1.0011 -3.6858 11 8 6.0613 -3.3555 -3.7146 12 7 5.4705 -1.8438 -5.5273 13 6 5.7107 -0.5798 -6.2281 14 6 4.9326 -2.9948 -6.2566 15 6 3.4675 -1.2741 0.6961 16 6 2.0862 -0.8078 1.2023 17 1 1.4479 -1.6632 1.4239 18 6 2.2349 0.0876 2.4338 19 6 2.7848 -0.7361 3.6000 20 7 2.9278 0.1215 4.7791 21 6 3.4053 -0.4004 5.9516 22 1 3.6768 -1.4443 6.0069 23 6 3.5402 0.4120 7.0689 24 7 3.2088 1.6840 7.0016 25 14 4.1923 -0.2999 8.6682 26 1 5.6711 -0.1689 8.7017 27 1 3.6038 0.4379 9.8147 28 1 3.8203 -1.7346 8.7594 29 1 -0.3633 0.4521 0.9229 30 1 -0.3633 0.5731 -0.8530 31 1 -0.3633 -1.0253 -0.0700 32 1 2.1560 -0.1720 -2.0836 33 1 1.4526 -1.6704 -1.4043 34 1 3.4638 -2.1576 -3.3913 35 1 4.0093 -0.4633 -3.3704 36 1 6.1092 0.1540 -5.5274 37 1 6.4287 -0.7410 -7.0322 38 1 4.7736 -0.2123 -6.6460 39 1 3.8435 -2.9750 -6.2145 40 1 5.2568 -2.9501 -7.2963 41 1 5.2970 -3.9159 -5.8017 42 1 4.2426 -0.5996 1.0600 43 1 3.6651 -2.2893 1.0402 44 1 1.2618 0.4969 2.7051 45 1 2.9222 0.9032 2.2091 46 1 3.7579 -1.1454 3.3287 47 1 2.0974 -1.5517 3.8246 48 1 2.6835 1.0589 4.7294 49 1 3.3028 2.2517 7.7825 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001104965102.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:23 Heat of formation + Delta-G solvation = -90.374267 kcal Electronic energy + Delta-G solvation = -28905.208496 eV Core-core repulsion = 24802.053651 eV Total energy + Delta-G solvation = -4103.154846 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.82 seconds Orbital eigenvalues (eV) -40.54797 -38.42610 -37.49079 -36.72196 -36.13250 -35.22240 -33.53591 -32.15332 -31.19449 -29.96172 -28.61187 -26.99594 -26.72201 -25.16329 -24.21404 -22.55348 -20.90349 -20.39732 -19.87346 -19.14571 -18.35207 -17.30051 -17.12190 -16.97363 -16.86273 -16.29272 -15.75474 -15.01789 -14.94721 -14.73984 -14.65196 -14.47571 -13.89156 -13.77397 -13.39217 -13.32741 -13.18075 -13.11548 -12.92633 -12.85417 -12.83978 -12.81296 -12.36891 -12.34182 -11.97675 -11.95237 -11.87257 -11.59544 -11.47389 -11.20788 -11.07415 -10.84113 -10.67783 -10.55218 -10.45295 -10.32686 -9.97602 -9.66304 -9.63758 -8.98158 -8.85193 -6.90520 -5.74737 -3.03403 -0.27667 2.09710 2.19916 2.55968 3.46116 3.46853 3.51141 3.52554 3.70545 3.76256 4.18391 4.25975 4.33825 4.43061 4.53279 4.63411 4.65123 4.82968 4.85139 4.98056 5.03528 5.05963 5.12667 5.22616 5.28513 5.29175 5.38714 5.39298 5.45129 5.57505 5.63479 5.69200 5.78729 5.86778 5.92303 5.92712 5.94504 6.06911 6.21799 6.33540 6.35423 6.82395 6.86464 7.07426 7.59763 7.72425 8.44382 9.55429 10.13190 10.47588 11.48242 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017272 B = 0.002063 C = 0.001921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.769141 B =13568.002397 C =14574.874551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.102 4.102 3 H 0.090 0.910 4 C 0.098 3.902 5 N -0.605 5.605 6 C 0.554 3.446 7 O -0.533 6.533 8 C -0.671 4.671 9 S 2.642 3.358 10 O -0.934 6.934 11 O -0.935 6.935 12 N -1.010 6.010 13 C 0.082 3.918 14 C 0.079 3.921 15 C 0.106 3.894 16 C -0.089 4.089 17 H 0.089 0.911 18 C -0.115 4.115 19 C 0.150 3.850 20 N -0.734 5.734 21 C -0.238 4.238 22 H 0.070 0.930 23 C -0.016 4.016 24 N -0.935 5.935 25 Si 0.908 3.092 26 H -0.289 1.289 27 H -0.291 1.291 28 H -0.282 1.282 29 H 0.067 0.933 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.157 0.843 35 H 0.158 0.842 36 H 0.087 0.913 37 H 0.068 0.932 38 H 0.061 0.939 39 H 0.055 0.945 40 H 0.078 0.922 41 H 0.086 0.914 42 H 0.081 0.919 43 H 0.076 0.924 44 H 0.070 0.930 45 H 0.065 0.935 46 H 0.020 0.980 47 H 0.018 0.982 48 H 0.383 0.617 49 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.831 -4.790 -32.946 33.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.121 4.121 3 H 0.108 0.892 4 C -0.024 4.024 5 N -0.337 5.337 6 C 0.340 3.660 7 O -0.411 6.411 8 C -0.798 4.798 9 S 2.730 3.270 10 O -0.924 6.924 11 O -0.925 6.925 12 N -0.850 5.850 13 C -0.063 4.063 14 C -0.066 4.066 15 C -0.015 4.015 16 C -0.108 4.108 17 H 0.107 0.893 18 C -0.153 4.153 19 C 0.023 3.977 20 N -0.378 5.378 21 C -0.370 4.370 22 H 0.088 0.912 23 C -0.211 4.211 24 N -0.583 5.583 25 Si 0.739 3.261 26 H -0.217 1.217 27 H -0.218 1.218 28 H -0.208 1.208 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.175 0.825 35 H 0.176 0.824 36 H 0.106 0.894 37 H 0.086 0.914 38 H 0.080 0.920 39 H 0.074 0.926 40 H 0.097 0.903 41 H 0.105 0.895 42 H 0.100 0.900 43 H 0.094 0.906 44 H 0.088 0.912 45 H 0.084 0.916 46 H 0.038 0.962 47 H 0.036 0.964 48 H 0.217 0.783 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -4.356 -5.379 -32.257 32.991 hybrid contribution -0.666 0.290 0.750 1.044 sum -5.022 -5.089 -31.507 32.308 Atomic orbital electron populations 1.21700 0.93329 1.02179 1.02590 1.22453 0.96527 0.99647 0.93516 0.89197 1.22565 0.82894 0.98629 0.98338 1.48346 1.12051 1.65549 1.07802 1.18721 0.83557 0.77947 0.85814 1.90892 1.25319 1.47906 1.76989 1.31163 1.28640 1.14766 1.05191 1.04389 0.75501 0.74771 0.72378 1.93598 1.51458 1.63357 1.83979 1.93579 1.82666 1.32002 1.84286 1.57523 1.81116 1.19389 1.26928 1.21627 1.01626 0.84340 0.98724 1.21641 0.98439 0.88054 0.98455 1.22292 0.98894 1.02855 0.77471 1.22312 0.94767 0.98952 0.94818 0.89303 1.21739 1.02034 0.98089 0.93483 1.20692 0.97038 0.93282 0.86712 1.42356 1.78578 1.09601 1.07272 1.19239 1.34893 0.94493 0.88341 0.91179 1.24748 1.02351 0.95775 0.98260 1.69658 1.54468 1.04558 1.29662 0.86176 0.78580 0.77950 0.83423 1.21673 1.21782 1.20758 0.91354 0.92467 0.92318 0.90558 0.90685 0.82463 0.82434 0.89424 0.91373 0.92007 0.92646 0.90348 0.89508 0.90029 0.90559 0.91162 0.91590 0.96247 0.96405 0.78332 0.93543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.98 9.31 37.16 0.35 -0.64 16 2 C -0.10 -0.88 3.09 -88.47 -0.27 -1.15 16 3 H 0.09 0.81 8.05 -51.93 -0.42 0.39 16 4 C 0.10 0.75 6.16 -2.52 -0.02 0.73 16 5 N -0.60 -6.94 3.33 -170.51 -0.57 -7.51 16 6 C 0.55 7.15 7.87 -10.99 -0.09 7.07 16 7 O -0.53 -9.38 16.19 5.56 0.09 -9.29 16 8 C -0.67 -5.12 5.67 36.01 0.20 -4.92 16 9 S 2.64 27.89 4.55 -107.50 -0.49 27.40 16 10 O -0.93 -13.17 16.57 -57.55 -0.95 -14.12 16 11 O -0.94 -13.00 16.57 -57.55 -0.95 -13.95 16 12 N -1.01 -6.50 3.52 -129.21 -0.45 -6.95 16 13 C 0.08 0.37 10.62 59.85 0.64 1.01 16 14 C 0.08 0.35 10.68 59.85 0.64 0.99 16 15 C 0.11 1.40 5.61 -3.06 -0.02 1.38 16 16 C -0.09 -1.02 2.45 -88.79 -0.22 -1.23 16 17 H 0.09 0.96 8.04 -51.93 -0.42 0.54 16 18 C -0.12 -1.72 4.71 -26.74 -0.13 -1.84 16 19 C 0.15 2.98 6.11 -4.04 -0.02 2.96 16 20 N -0.73 -18.86 5.60 -59.91 -0.34 -19.20 16 21 C -0.24 -6.83 9.99 -15.06 -0.15 -6.98 16 22 H 0.07 1.96 7.83 -52.48 -0.41 1.55 16 23 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16 24 N -0.93 -28.66 13.06 55.49 0.72 -27.93 16 25 Si 0.91 22.88 29.55 -169.99 -5.02 17.85 16 26 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 27 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 28 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.38 8.08 -51.93 -0.42 -0.04 16 32 H 0.08 0.40 7.48 -51.93 -0.39 0.01 16 33 H 0.07 0.46 7.99 -51.92 -0.41 0.04 16 34 H 0.16 0.65 8.14 -51.92 -0.42 0.22 16 35 H 0.16 0.67 7.85 -51.93 -0.41 0.26 16 36 H 0.09 0.46 6.87 -51.93 -0.36 0.10 16 37 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 38 H 0.06 0.13 8.14 -51.93 -0.42 -0.29 16 39 H 0.05 0.12 8.14 -51.93 -0.42 -0.30 16 40 H 0.08 0.22 8.07 -51.93 -0.42 -0.20 16 41 H 0.09 0.49 6.91 -51.93 -0.36 0.13 16 42 H 0.08 1.23 7.76 -51.93 -0.40 0.83 16 43 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.07 1.02 8.06 -51.93 -0.42 0.61 16 46 H 0.02 0.40 7.49 -51.93 -0.39 0.01 16 47 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 48 H 0.38 10.26 7.67 -40.82 -0.31 9.94 16 49 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 407.76 15.07 6.14 6.14 Total: -1.00 -39.58 407.76 -9.47 -49.05 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -8.47 Total: 1.68 kcal Atomic # 6 Polarization: -4.00 SS G_CDS: 0.82 Total: -3.18 kcal Atomic # 7 Polarization: -60.96 SS G_CDS: -0.63 Total: -61.59 kcal Atomic # 8 Polarization: -35.55 SS G_CDS: -1.82 Total: -37.36 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -5.02 Total: 17.85 kcal Atomic # 16 Polarization: 27.89 SS G_CDS: -0.49 Total: 27.40 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -39.58 -9.47 -49.05 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104965102.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.320 kcal (2) G-P(sol) polarization free energy of solvation -39.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.82 seconds