Wall clock time and date at job start Wed Apr 1 2020 05:14:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 110.91255 * 2 1 4 4 C 1.54912 * 111.00695 * 236.10082 * 2 1 3 5 5 N 1.47431 * 104.82949 * 204.91801 * 4 2 1 6 6 C 1.34774 * 125.64341 * 204.09147 * 5 4 2 7 7 O 1.21281 * 119.99469 * 180.02562 * 6 5 4 8 8 C 1.50701 * 120.00149 * 0.03974 * 6 5 4 9 9 S 1.81403 * 109.46912 * 180.02562 * 8 6 5 10 10 O 1.42101 * 110.54420 * 291.62380 * 9 8 6 11 11 O 1.42097 * 110.54158 * 68.37496 * 9 8 6 12 12 N 1.65599 * 104.44801 * 179.97438 * 9 8 6 13 13 C 1.46500 * 120.00178 * 89.99838 * 12 9 8 14 14 C 1.46500 * 119.99869 * 270.00009 * 12 9 8 15 15 C 1.47023 * 108.70590 * 24.12456 * 5 4 2 16 16 C 1.54328 * 107.27043 * 358.94013 * 15 5 4 17 17 H 1.09000 * 110.71672 * 96.34629 * 16 15 5 18 18 C 1.52992 * 110.72106 * 219.44112 * 16 15 5 19 19 C 1.52997 * 109.47482 * 293.55011 * 18 16 15 20 20 N 1.46505 * 109.47212 * 179.97438 * 19 18 16 21 21 C 1.36936 * 119.99992 * 179.97438 * 20 19 18 22 22 H 1.08006 * 119.99834 * 0.02562 * 21 20 19 23 23 C 1.38801 * 120.00093 * 180.02562 * 21 20 19 24 24 N 1.31619 * 120.00176 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 120.00265 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.46951 * 89.99797 * 25 23 21 27 27 H 1.48500 * 109.47313 * 210.00112 * 25 23 21 28 28 H 1.48501 * 109.46991 * 330.00153 * 25 23 21 29 29 H 1.08997 * 109.47132 * 296.09832 * 1 2 3 30 30 H 1.09005 * 109.47105 * 56.10327 * 1 2 3 31 31 H 1.09001 * 109.46710 * 176.09648 * 1 2 3 32 32 H 1.08992 * 110.36783 * 86.07310 * 4 2 1 33 33 H 1.09008 * 110.45850 * 323.79680 * 4 2 1 34 34 H 1.08998 * 109.46992 * 299.99638 * 8 6 5 35 35 H 1.08998 * 109.47062 * 60.00236 * 8 6 5 36 36 H 1.09005 * 109.46818 * 0.02562 * 13 12 9 37 37 H 1.08997 * 109.46916 * 119.99846 * 13 12 9 38 38 H 1.08994 * 109.47301 * 239.99640 * 13 12 9 39 39 H 1.09004 * 109.47361 * 90.00292 * 14 12 9 40 40 H 1.08997 * 109.47278 * 210.00002 * 14 12 9 41 41 H 1.08999 * 109.47489 * 330.00164 * 14 12 9 42 42 H 1.08996 * 109.87920 * 239.53158 * 15 5 4 43 43 H 1.08996 * 109.88311 * 118.35693 * 15 5 4 44 44 H 1.09002 * 109.47103 * 173.54764 * 18 16 15 45 45 H 1.08998 * 109.46862 * 53.55576 * 18 16 15 46 46 H 1.09002 * 109.47153 * 59.99783 * 19 18 16 47 47 H 1.09001 * 109.46832 * 299.99974 * 19 18 16 48 48 H 0.96996 * 119.99606 * 0.02562 * 20 19 18 49 49 H 0.97001 * 120.00803 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0854 -0.8066 -1.2003 5 7 3.4273 -1.2430 -0.7732 6 6 4.4478 -1.5615 -1.5939 7 8 5.5128 -1.9098 -1.1300 8 6 4.2656 -1.4844 -3.0879 9 16 5.8070 -1.9713 -3.9109 10 8 6.8206 -1.0011 -3.6858 11 8 6.0613 -3.3555 -3.7146 12 7 5.4705 -1.8438 -5.5273 13 6 5.7107 -0.5798 -6.2281 14 6 4.9326 -2.9948 -6.2566 15 6 3.4675 -1.2741 0.6961 16 6 2.0862 -0.8078 1.2023 17 1 1.4479 -1.6632 1.4239 18 6 2.2349 0.0876 2.4338 19 6 2.7848 -0.7361 3.6000 20 7 2.9278 0.1215 4.7791 21 6 3.4053 -0.4004 5.9516 22 1 3.6768 -1.4443 6.0069 23 6 3.5402 0.4120 7.0689 24 7 3.2088 1.6840 7.0016 25 14 4.1923 -0.2999 8.6682 26 1 5.6711 -0.1689 8.7017 27 1 3.6038 0.4379 9.8147 28 1 3.8203 -1.7346 8.7594 29 1 -0.3633 0.4521 0.9229 30 1 -0.3633 0.5731 -0.8530 31 1 -0.3633 -1.0253 -0.0700 32 1 2.1560 -0.1720 -2.0836 33 1 1.4526 -1.6704 -1.4043 34 1 3.4638 -2.1576 -3.3913 35 1 4.0093 -0.4633 -3.3704 36 1 6.1092 0.1540 -5.5274 37 1 6.4287 -0.7410 -7.0322 38 1 4.7736 -0.2123 -6.6460 39 1 3.8435 -2.9750 -6.2145 40 1 5.2568 -2.9501 -7.2963 41 1 5.2970 -3.9159 -5.8017 42 1 4.2426 -0.5996 1.0600 43 1 3.6651 -2.2893 1.0402 44 1 1.2618 0.4969 2.7051 45 1 2.9222 0.9032 2.2091 46 1 3.7579 -1.1454 3.3287 47 1 2.0974 -1.5517 3.8246 48 1 2.6835 1.0589 4.7294 49 1 3.3028 2.2517 7.7825 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001104965102.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:22 Heat of formation + Delta-G solvation = -121.999055 kcal Electronic energy + Delta-G solvation = -28906.579850 eV Core-core repulsion = 24802.053651 eV Total energy + Delta-G solvation = -4104.526199 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.48156 -39.42720 -38.38655 -37.30467 -36.96349 -36.83756 -34.83040 -33.53706 -32.21403 -31.34917 -28.92786 -28.38445 -27.34874 -25.93347 -25.54762 -24.06007 -22.16865 -21.21028 -20.84341 -19.87794 -19.21634 -19.03527 -18.08186 -17.88595 -17.62459 -17.11134 -16.67709 -16.55310 -15.89273 -15.58199 -15.44530 -15.38811 -15.35724 -15.07437 -14.69808 -14.37343 -14.01386 -13.90812 -13.80122 -13.63968 -13.62887 -13.34573 -13.30006 -13.20015 -13.09306 -12.89084 -12.66542 -12.57549 -12.54930 -12.54008 -12.33987 -12.20758 -12.12188 -11.93083 -11.67440 -11.58992 -11.49508 -11.22163 -10.95776 -10.04292 -9.91420 -9.03502 -7.98762 -5.27841 -1.01915 1.17593 1.44415 1.46881 1.49902 1.55046 1.79058 2.53137 2.74491 3.02613 3.04641 3.34581 3.45217 3.51920 3.64146 3.82136 3.85805 4.09937 4.13103 4.19937 4.29522 4.39503 4.47622 4.52691 4.54683 4.62221 4.62848 4.68496 4.76113 4.80942 4.85727 4.88806 4.98004 4.98893 5.03100 5.05229 5.06381 5.16704 5.27790 5.32644 5.41338 5.46326 5.53987 5.55611 6.19525 6.24351 6.67224 7.30142 8.06225 8.29440 9.24696 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017272 B = 0.002063 C = 0.001921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.769141 B =13568.002397 C =14574.874551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.096 4.096 3 H 0.085 0.915 4 C 0.094 3.906 5 N -0.602 5.602 6 C 0.538 3.462 7 O -0.596 6.596 8 C -0.647 4.647 9 S 2.637 3.363 10 O -0.985 6.985 11 O -0.984 6.984 12 N -1.001 6.001 13 C 0.073 3.927 14 C 0.070 3.930 15 C 0.103 3.897 16 C -0.079 4.079 17 H 0.101 0.899 18 C -0.101 4.101 19 C 0.147 3.853 20 N -0.748 5.748 21 C -0.249 4.249 22 H 0.072 0.928 23 C -0.076 4.076 24 N -0.968 5.968 25 Si 0.974 3.026 26 H -0.289 1.289 27 H -0.291 1.291 28 H -0.269 1.269 29 H 0.054 0.946 30 H 0.079 0.921 31 H 0.069 0.931 32 H 0.114 0.886 33 H 0.102 0.898 34 H 0.204 0.796 35 H 0.202 0.798 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.097 0.903 39 H 0.088 0.912 40 H 0.096 0.904 41 H 0.067 0.933 42 H 0.050 0.950 43 H 0.061 0.939 44 H 0.076 0.924 45 H 0.055 0.945 46 H 0.010 0.990 47 H 0.023 0.977 48 H 0.375 0.625 49 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.750 -4.919 -35.672 37.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.115 4.115 3 H 0.104 0.896 4 C -0.027 4.027 5 N -0.333 5.333 6 C 0.326 3.674 7 O -0.479 6.479 8 C -0.777 4.777 9 S 2.729 3.271 10 O -0.975 6.975 11 O -0.973 6.973 12 N -0.843 5.843 13 C -0.071 4.071 14 C -0.075 4.075 15 C -0.020 4.020 16 C -0.099 4.099 17 H 0.119 0.881 18 C -0.139 4.139 19 C 0.021 3.979 20 N -0.391 5.391 21 C -0.381 4.381 22 H 0.090 0.910 23 C -0.269 4.269 24 N -0.619 5.619 25 Si 0.803 3.197 26 H -0.216 1.216 27 H -0.217 1.217 28 H -0.194 1.194 29 H 0.073 0.927 30 H 0.098 0.902 31 H 0.088 0.912 32 H 0.132 0.868 33 H 0.120 0.880 34 H 0.221 0.779 35 H 0.219 0.781 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.116 0.884 39 H 0.106 0.894 40 H 0.115 0.885 41 H 0.086 0.914 42 H 0.069 0.931 43 H 0.079 0.921 44 H 0.095 0.905 45 H 0.073 0.927 46 H 0.028 0.972 47 H 0.041 0.959 48 H 0.206 0.794 49 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -7.286 -5.539 -35.042 36.218 hybrid contribution 0.198 0.324 1.537 1.583 sum -7.088 -5.215 -33.505 34.641 Atomic orbital electron populations 1.21685 0.91536 1.03205 1.02945 1.22441 0.97828 0.99033 0.92162 0.89637 1.22949 0.80660 1.00173 0.98898 1.48456 1.13457 1.64660 1.06757 1.19597 0.82822 0.77003 0.88022 1.90870 1.27852 1.50636 1.78507 1.30984 1.27695 1.18527 1.00478 1.04001 0.76361 0.73218 0.73566 1.93532 1.54709 1.64081 1.85161 1.93517 1.84132 1.34289 1.85404 1.57175 1.81295 1.20748 1.25078 1.21876 1.03705 0.83183 0.98351 1.21903 1.00373 0.86408 0.98766 1.22148 0.99155 1.01282 0.79403 1.22210 0.94068 0.99175 0.94433 0.88051 1.21571 1.01517 0.97666 0.93127 1.20882 0.96873 0.93482 0.86656 1.42595 1.78390 1.09838 1.08258 1.19629 1.34193 0.94693 0.89566 0.90984 1.25595 1.03339 0.96261 1.01679 1.69805 1.55959 1.05740 1.30370 0.85129 0.77630 0.77767 0.79176 1.21586 1.21701 1.19421 0.92704 0.90201 0.91238 0.86758 0.87954 0.77882 0.78098 0.90557 0.90849 0.88441 0.89380 0.88508 0.91442 0.93102 0.92066 0.90526 0.92654 0.97203 0.95889 0.79354 0.93883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 9.31 71.98 0.67 -0.67 16 2 C -0.10 -1.33 3.09 -9.40 -0.03 -1.36 16 3 H 0.09 1.30 8.05 -2.39 -0.02 1.28 16 4 C 0.09 0.98 6.16 86.86 0.53 1.52 16 5 N -0.60 -12.74 3.33 -811.77 -2.70 -15.44 16 6 C 0.54 13.38 7.87 87.66 0.69 14.07 16 7 O -0.60 -22.06 16.19 -3.03 -0.05 -22.11 16 8 C -0.65 -7.80 5.67 71.24 0.40 -7.40 16 9 S 2.64 54.85 4.55 -56.49 -0.26 54.59 16 10 O -0.98 -29.04 16.57 -127.64 -2.12 -31.15 16 11 O -0.98 -28.45 16.57 -127.64 -2.12 -30.56 16 12 N -1.00 -10.76 3.52 -562.69 -1.98 -12.74 16 13 C 0.07 0.48 10.62 127.77 1.36 1.83 16 14 C 0.07 0.43 10.68 127.77 1.37 1.79 16 15 C 0.10 2.75 5.61 86.73 0.49 3.23 16 16 C -0.08 -1.71 2.45 -9.61 -0.02 -1.74 16 17 H 0.10 1.98 8.04 -2.39 -0.02 1.96 16 18 C -0.10 -3.00 4.71 30.59 0.14 -2.86 16 19 C 0.15 5.98 6.11 86.38 0.53 6.50 16 20 N -0.75 -39.37 5.60 -343.45 -1.92 -41.30 16 21 C -0.25 -14.49 9.99 84.03 0.84 -13.65 16 22 H 0.07 4.06 7.83 -2.91 -0.02 4.04 16 23 C -0.08 -4.53 5.50 84.86 0.47 -4.06 16 24 N -0.97 -60.42 13.06 21.65 0.28 -60.14 16 25 Si 0.97 47.53 29.55 68.60 2.03 49.56 16 26 H -0.29 -13.95 7.11 99.48 0.71 -13.25 16 27 H -0.29 -14.04 7.11 99.48 0.71 -13.34 16 28 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 29 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.08 0.48 8.14 -2.38 -0.02 0.46 16 31 H 0.07 0.56 8.08 -2.39 -0.02 0.54 16 32 H 0.11 0.42 7.48 -2.39 -0.02 0.40 16 33 H 0.10 0.62 7.99 -2.38 -0.02 0.60 16 34 H 0.20 0.55 8.14 -2.39 -0.02 0.53 16 35 H 0.20 0.64 7.85 -2.39 -0.02 0.62 16 36 H 0.08 0.70 6.87 -2.38 -0.02 0.68 16 37 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 38 H 0.10 -0.03 8.14 -2.39 -0.02 -0.05 16 39 H 0.09 -0.01 8.14 -2.39 -0.02 -0.03 16 40 H 0.10 0.25 8.07 -2.39 -0.02 0.23 16 41 H 0.07 0.70 6.91 -2.39 -0.02 0.69 16 42 H 0.05 1.65 7.76 -2.39 -0.02 1.63 16 43 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 44 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 45 H 0.05 1.76 8.06 -2.39 -0.02 1.74 16 46 H 0.01 0.43 7.49 -2.39 -0.02 0.41 16 47 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 48 H 0.37 20.64 7.67 -92.71 -0.71 19.93 16 49 H 0.25 15.19 8.31 -92.71 -0.77 14.42 16 Total: -1.00 -93.22 407.76 -1.18 -94.40 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: 0.22 Total: 17.68 kcal Atomic # 6 Polarization: -10.21 SS G_CDS: 7.43 Total: -2.77 kcal Atomic # 7 Polarization: -123.29 SS G_CDS: -6.32 Total: -129.61 kcal Atomic # 8 Polarization: -79.55 SS G_CDS: -4.28 Total: -83.83 kcal Atomic # 14 Polarization: 47.53 SS G_CDS: 2.03 Total: 49.56 kcal Atomic # 16 Polarization: 54.85 SS G_CDS: -0.26 Total: 54.59 kcal Total: -93.22 -1.18 -94.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104965102.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.603 kcal (2) G-P(sol) polarization free energy of solvation -93.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds