Wall clock time and date at job start Wed Apr 1 2020 05:15:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 110.66051 * 2 1 4 4 C 1.54594 * 110.98842 * 236.84150 * 2 1 3 5 5 N 1.48119 * 103.42293 * 204.37467 * 4 2 1 6 6 C 1.34779 * 127.02953 * 219.28584 * 5 4 2 7 7 O 1.21284 * 119.99760 * 179.68345 * 6 5 4 8 8 C 1.50693 * 120.00354 * 359.68310 * 6 5 4 9 9 C 1.53005 * 109.47446 * 179.97438 * 8 6 5 10 10 S 1.81398 * 109.47212 * 179.97438 * 9 8 6 11 11 O 1.42101 * 110.54049 * 68.38232 * 10 9 8 12 12 O 1.42105 * 110.54390 * 291.62864 * 10 9 8 13 13 N 1.65599 * 104.44698 * 180.02562 * 10 9 8 14 14 C 1.46506 * 120.00145 * 90.00384 * 13 10 9 15 15 C 1.46496 * 120.00096 * 269.99885 * 13 10 9 16 16 C 1.47484 * 105.93545 * 39.02422 * 5 4 2 17 17 C 1.54008 * 107.08180 * 334.77925 * 16 5 4 18 18 H 1.08999 * 110.32821 * 120.19673 * 17 16 5 19 19 C 1.52999 * 110.32500 * 242.31272 * 17 16 5 20 20 N 1.46495 * 109.47035 * 293.54524 * 19 17 16 21 21 C 1.36938 * 120.00001 * 180.02562 * 20 19 17 22 22 H 1.08004 * 120.00378 * 359.97438 * 21 20 19 23 23 C 1.38811 * 120.00241 * 179.97438 * 21 20 19 24 24 N 1.31627 * 119.99816 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 120.00284 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47169 * 0.02562 * 25 23 21 27 27 H 1.48496 * 109.47178 * 120.00421 * 25 23 21 28 28 H 1.48506 * 109.47204 * 240.00205 * 25 23 21 29 29 H 1.09005 * 109.47148 * 296.80917 * 1 2 3 30 30 H 1.08996 * 109.47519 * 56.80843 * 1 2 3 31 31 H 1.08993 * 109.47272 * 176.81233 * 1 2 3 32 32 H 1.09002 * 110.61831 * 85.85739 * 4 2 1 33 33 H 1.08999 * 110.54996 * 322.85338 * 4 2 1 34 34 H 1.09007 * 109.46933 * 60.00076 * 8 6 5 35 35 H 1.08991 * 109.47350 * 300.00174 * 8 6 5 36 36 H 1.09007 * 109.46622 * 60.00340 * 9 8 6 37 37 H 1.08991 * 109.47358 * 300.00623 * 9 8 6 38 38 H 1.09001 * 109.47060 * 270.00189 * 14 13 10 39 39 H 1.09004 * 109.47073 * 29.99678 * 14 13 10 40 40 H 1.09000 * 109.47212 * 149.99761 * 14 13 10 41 41 H 1.09006 * 109.47383 * 180.02562 * 15 13 10 42 42 H 1.08999 * 109.47596 * 300.00073 * 15 13 10 43 43 H 1.09000 * 109.47160 * 60.00270 * 15 13 10 44 44 H 1.08995 * 109.90955 * 94.14023 * 16 5 4 45 45 H 1.09003 * 109.91142 * 215.42168 * 16 5 4 46 46 H 1.08996 * 109.47182 * 53.54842 * 19 17 16 47 47 H 1.09005 * 109.46768 * 173.54543 * 19 17 16 48 48 H 0.96998 * 120.00129 * 359.97438 * 20 19 17 49 49 H 0.96998 * 119.99925 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9145 1.0199 0.0000 4 6 2.0837 -0.7895 -1.2083 5 7 3.4321 -1.2057 -0.7584 6 6 4.5592 -1.2406 -1.4965 7 8 5.6026 -1.6001 -0.9934 8 6 4.5232 -0.8330 -2.9468 9 6 5.9241 -0.9628 -3.5482 10 16 5.8804 -0.4729 -5.2942 11 8 5.6346 0.9215 -5.4148 12 8 5.1415 -1.4159 -6.0584 13 7 7.4413 -0.6594 -5.8148 14 6 7.8785 -1.9405 -6.3752 15 6 8.3851 0.4566 -5.7151 16 6 3.2903 -1.5681 0.6642 17 6 2.0775 -0.7916 1.2101 18 1 1.3221 -1.4829 1.5835 19 6 2.5155 0.1660 2.3202 20 7 2.9827 -0.6056 3.4745 21 6 3.4269 0.0418 4.5964 22 1 3.4332 1.1213 4.6302 23 6 3.8691 -0.6893 5.6904 24 7 3.8619 -2.0049 5.6492 25 14 4.4757 0.1938 7.2206 26 1 4.3834 1.6615 7.0144 27 1 3.6370 -0.1961 8.3824 28 1 5.8885 -0.1819 7.4817 29 1 -0.3634 0.4635 0.9172 30 1 -0.3634 0.5626 -0.8599 31 1 -0.3633 -1.0260 -0.0571 32 1 2.1524 -0.1481 -2.0870 33 1 1.4612 -1.6602 -1.4142 34 1 4.1890 0.2016 -3.0252 35 1 3.8333 -1.4797 -3.4889 36 1 6.2586 -1.9973 -3.4697 37 1 6.6136 -0.3159 -3.0060 38 1 8.2619 -2.5748 -5.5759 39 1 7.0339 -2.4336 -6.8567 40 1 8.6647 -1.7664 -7.1098 41 1 9.3554 0.1479 -6.1043 42 1 8.0128 1.3003 -6.2962 43 1 8.4893 0.7522 -4.6711 44 1 3.1179 -2.6402 0.7587 45 1 4.1896 -1.2843 1.2110 46 1 3.3238 0.7997 1.9554 47 1 1.6714 0.7886 2.6168 48 1 2.9767 -1.5751 3.4444 49 1 4.1712 -2.5158 6.4135 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107023404.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:13 Heat of formation + Delta-G solvation = -119.766978 kcal Electronic energy + Delta-G solvation = -28950.406970 eV Core-core repulsion = 24845.977561 eV Total energy + Delta-G solvation = -4104.429409 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.30078 -39.26847 -38.31742 -37.27050 -36.91714 -36.47882 -34.49813 -33.96925 -33.09425 -30.71132 -28.93998 -27.86590 -27.20167 -26.03171 -25.44295 -24.62749 -22.49237 -21.04210 -20.38541 -19.95766 -19.25507 -18.81670 -18.17839 -17.62779 -17.24671 -17.04679 -16.74380 -16.65916 -16.06978 -15.56336 -15.40144 -15.32074 -15.23414 -14.97957 -14.70864 -14.12964 -14.04565 -13.98222 -13.75195 -13.65757 -13.60494 -13.27259 -13.23621 -13.22303 -13.14297 -12.87730 -12.80053 -12.60486 -12.56427 -12.53559 -12.50424 -12.12448 -12.02175 -11.97493 -11.84794 -11.50088 -11.38490 -11.06004 -10.97654 -10.01230 -9.79320 -9.03755 -7.98664 -5.27667 -0.87912 1.44039 1.45404 1.48067 1.55314 1.55327 1.87738 2.52773 2.71550 3.08028 3.21455 3.34592 3.41630 3.52771 3.70227 3.74276 3.78454 3.87153 4.17373 4.21581 4.24915 4.38372 4.44704 4.53493 4.54834 4.55606 4.56456 4.65934 4.72170 4.77244 4.78992 4.89356 4.91935 4.97129 5.00268 5.00665 5.03353 5.09602 5.21439 5.26217 5.38186 5.45534 5.54075 5.56648 6.23859 6.48103 7.01399 7.29985 8.05300 8.28256 9.25114 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.014553 B = 0.002228 C = 0.002041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.553122 B =12567.017018 C =13715.276681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.093 4.093 3 H 0.083 0.917 4 C 0.096 3.904 5 N -0.620 5.620 6 C 0.528 3.472 7 O -0.586 6.586 8 C -0.132 4.132 9 C -0.610 4.610 10 S 2.635 3.365 11 O -0.977 6.977 12 O -0.976 6.976 13 N -1.010 6.010 14 C 0.071 3.929 15 C 0.078 3.922 16 C 0.115 3.885 17 C -0.093 4.093 18 H 0.090 0.910 19 C 0.163 3.837 20 N -0.745 5.745 21 C -0.245 4.245 22 H 0.074 0.926 23 C -0.077 4.077 24 N -0.969 5.969 25 Si 0.974 3.026 26 H -0.266 1.266 27 H -0.289 1.289 28 H -0.295 1.295 29 H 0.052 0.948 30 H 0.082 0.918 31 H 0.066 0.934 32 H 0.116 0.884 33 H 0.100 0.900 34 H 0.132 0.868 35 H 0.137 0.863 36 H 0.144 0.856 37 H 0.140 0.860 38 H 0.068 0.932 39 H 0.077 0.923 40 H 0.096 0.904 41 H 0.104 0.896 42 H 0.063 0.937 43 H 0.067 0.933 44 H 0.062 0.938 45 H 0.042 0.958 46 H 0.007 0.993 47 H 0.030 0.970 48 H 0.374 0.626 49 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.928 2.827 -28.973 29.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.112 4.112 3 H 0.102 0.898 4 C -0.025 4.025 5 N -0.353 5.353 6 C 0.317 3.683 7 O -0.466 6.466 8 C -0.173 4.173 9 C -0.739 4.739 10 S 2.728 3.272 11 O -0.968 6.968 12 O -0.966 6.966 13 N -0.849 5.849 14 C -0.073 4.073 15 C -0.066 4.066 16 C -0.009 4.009 17 C -0.113 4.113 18 H 0.108 0.892 19 C 0.037 3.963 20 N -0.388 5.388 21 C -0.377 4.377 22 H 0.092 0.908 23 C -0.269 4.269 24 N -0.620 5.620 25 Si 0.803 3.197 26 H -0.190 1.190 27 H -0.216 1.216 28 H -0.222 1.222 29 H 0.071 0.929 30 H 0.101 0.899 31 H 0.085 0.915 32 H 0.134 0.866 33 H 0.118 0.882 34 H 0.150 0.850 35 H 0.155 0.845 36 H 0.162 0.838 37 H 0.158 0.842 38 H 0.087 0.913 39 H 0.096 0.904 40 H 0.115 0.885 41 H 0.123 0.877 42 H 0.081 0.919 43 H 0.085 0.915 44 H 0.080 0.920 45 H 0.061 0.939 46 H 0.025 0.975 47 H 0.048 0.952 48 H 0.206 0.794 49 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 0.917 3.097 -29.236 29.414 hybrid contribution 1.104 -0.487 2.173 2.486 sum 2.021 2.611 -27.063 27.263 Atomic orbital electron populations 1.21707 0.91598 1.03038 1.02882 1.22238 0.97759 0.99144 0.92108 0.89842 1.22998 0.80985 1.00240 0.98241 1.48948 1.09731 1.65375 1.11216 1.20591 0.81630 0.77141 0.88922 1.90715 1.31672 1.49987 1.74260 1.21494 0.96735 1.06992 0.92041 1.30458 1.04482 1.14636 1.24320 1.04238 0.72976 0.73327 0.76631 1.93564 1.84176 1.32677 1.86339 1.93556 1.70507 1.64917 1.67622 1.57179 1.30057 1.21021 1.76688 1.21890 1.02408 0.83049 0.99969 1.21785 0.94225 0.87852 1.02774 1.21934 0.98697 0.98809 0.81411 1.22278 0.96039 0.97521 0.95439 0.89182 1.20829 0.95601 0.93348 0.86552 1.42590 1.77247 1.05577 1.13373 1.19653 1.33583 0.91638 0.92848 0.90799 1.25593 1.03282 0.96265 1.01743 1.69824 1.54948 1.05601 1.31626 0.85067 0.77068 0.78165 0.79426 1.19024 1.21632 1.22227 0.92862 0.89891 0.91544 0.86607 0.88204 0.84968 0.84529 0.83821 0.84192 0.91315 0.90445 0.88511 0.87741 0.91872 0.91477 0.92011 0.93949 0.97479 0.95199 0.79418 0.93971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.05 9.17 71.98 0.66 -1.39 16 2 C -0.09 -1.87 3.19 -9.70 -0.03 -1.90 16 3 H 0.08 1.74 7.87 -2.39 -0.02 1.73 16 4 C 0.10 1.61 6.38 86.61 0.55 2.16 16 5 N -0.62 -16.48 3.29 -810.08 -2.67 -19.15 16 6 C 0.53 14.81 7.89 87.65 0.69 15.50 16 7 O -0.59 -22.27 16.32 -3.04 -0.05 -22.32 16 8 C -0.13 -2.27 4.64 29.85 0.14 -2.14 16 9 C -0.61 -9.91 5.47 71.98 0.39 -9.52 16 10 S 2.64 43.29 5.43 -56.49 -0.31 42.98 16 11 O -0.98 -21.36 17.11 -127.65 -2.18 -23.54 16 12 O -0.98 -20.53 16.57 -127.65 -2.12 -22.64 16 13 N -1.01 -12.82 3.52 -562.67 -1.98 -14.80 16 14 C 0.07 0.65 10.61 127.77 1.36 2.01 16 15 C 0.08 0.77 10.26 127.77 1.31 2.08 16 16 C 0.11 3.88 6.31 86.53 0.55 4.43 16 17 C -0.09 -2.81 2.64 -9.90 -0.03 -2.84 16 18 H 0.09 2.69 7.85 -2.39 -0.02 2.67 16 19 C 0.16 6.52 5.35 86.38 0.46 6.98 16 20 N -0.75 -38.69 5.33 -343.46 -1.83 -40.52 16 21 C -0.25 -14.08 9.99 84.03 0.84 -13.24 16 22 H 0.07 4.09 7.83 -2.91 -0.02 4.07 16 23 C -0.08 -4.52 5.50 84.86 0.47 -4.05 16 24 N -0.97 -60.72 13.06 21.65 0.28 -60.44 16 25 Si 0.97 47.25 29.55 68.60 2.03 49.28 16 26 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 27 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 28 H -0.29 -14.38 7.11 99.48 0.71 -13.68 16 29 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 30 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.07 0.92 8.11 -2.39 -0.02 0.90 16 32 H 0.12 1.15 7.23 -2.39 -0.02 1.13 16 33 H 0.10 1.29 8.02 -2.39 -0.02 1.28 16 34 H 0.13 1.64 7.90 -2.38 -0.02 1.63 16 35 H 0.14 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.14 2.23 8.10 -2.39 -0.02 2.21 16 37 H 0.14 2.30 8.10 -2.39 -0.02 2.28 16 38 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 39 H 0.08 0.84 6.91 -2.38 -0.02 0.83 16 40 H 0.10 0.49 7.92 -2.39 -0.02 0.47 16 41 H 0.10 0.51 7.79 -2.38 -0.02 0.49 16 42 H 0.06 0.70 7.90 -2.39 -0.02 0.68 16 43 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 44 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 45 H 0.04 1.84 7.48 -2.39 -0.02 1.83 16 46 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 47 H 0.03 1.16 8.14 -2.38 -0.02 1.15 16 48 H 0.37 20.59 7.51 -92.71 -0.70 19.90 16 49 H 0.25 15.21 8.31 -92.71 -0.77 14.44 16 Total: -1.00 -85.71 408.86 -1.23 -86.94 By element: Atomic # 1 Polarization: 25.90 SS G_CDS: 0.23 Total: 26.14 kcal Atomic # 6 Polarization: -9.28 SS G_CDS: 7.36 Total: -1.92 kcal Atomic # 7 Polarization: -128.72 SS G_CDS: -6.19 Total: -134.91 kcal Atomic # 8 Polarization: -64.16 SS G_CDS: -4.35 Total: -68.51 kcal Atomic # 14 Polarization: 47.25 SS G_CDS: 2.03 Total: 49.28 kcal Atomic # 16 Polarization: 43.29 SS G_CDS: -0.31 Total: 42.98 kcal Total: -85.71 -1.23 -86.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107023404.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.824 kcal (2) G-P(sol) polarization free energy of solvation -85.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds