Wall clock time and date at job start Wed Apr 1 2020 05:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47187 * 2 1 4 4 N 1.46499 * 109.46751 * 119.99283 * 2 1 3 5 5 S 1.65602 * 120.00135 * 264.99873 * 4 2 1 6 6 C 1.81400 * 104.44711 * 65.00550 * 5 4 2 7 7 O 1.42110 * 104.27643 * 181.07364 * 5 4 2 8 8 O 1.42098 * 104.27909 * 308.92971 * 5 4 2 9 9 C 1.50698 * 109.47608 * 239.99404 * 2 1 3 10 10 O 1.21276 * 120.00290 * 240.00436 * 9 2 1 11 11 N 1.34777 * 119.99673 * 59.99961 * 9 2 1 12 12 C 1.46497 * 119.99913 * 180.02562 * 11 9 2 13 13 C 1.52998 * 109.47342 * 176.55956 * 12 11 9 14 14 N 1.46500 * 109.47348 * 54.63311 * 13 12 11 15 15 C 1.36936 * 119.99501 * 62.74422 * 14 13 12 16 16 H 1.07997 * 120.00456 * 354.56780 * 15 14 13 17 17 C 1.38811 * 119.99955 * 174.56330 * 15 14 13 18 18 N 1.31624 * 120.00249 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 120.00186 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47069 * 0.02562 * 19 17 15 21 21 H 1.48495 * 109.46801 * 120.00129 * 19 17 15 22 22 H 1.48496 * 109.47310 * 240.00038 * 19 17 15 23 23 C 1.52997 * 109.47606 * 174.63743 * 13 12 11 24 24 C 1.52998 * 109.47606 * 179.97438 * 23 13 12 25 25 C 1.53005 * 109.46750 * 299.99918 * 24 23 13 26 26 C 1.52995 * 109.47310 * 60.00161 * 25 24 23 27 27 C 1.53003 * 109.46763 * 299.99631 * 26 25 24 28 28 H 1.09002 * 109.47315 * 300.00598 * 1 2 3 29 29 H 1.09001 * 109.46760 * 60.00416 * 1 2 3 30 30 H 1.09000 * 109.47121 * 180.02562 * 1 2 3 31 31 H 0.97003 * 119.99975 * 85.00524 * 4 2 1 32 32 H 1.09000 * 109.47578 * 59.99911 * 6 5 4 33 33 H 1.09005 * 109.46888 * 180.02562 * 6 5 4 34 34 H 1.08999 * 109.46854 * 299.99499 * 6 5 4 35 35 H 0.96999 * 120.00523 * 0.02562 * 11 9 2 36 36 H 1.08999 * 109.47114 * 56.55750 * 12 11 9 37 37 H 1.09004 * 109.47047 * 296.55860 * 12 11 9 38 38 H 0.96994 * 120.00614 * 243.02379 * 14 13 12 39 39 H 0.96997 * 120.00406 * 180.02562 * 18 17 15 40 40 H 1.08999 * 109.46902 * 300.00359 * 23 13 12 41 41 H 1.09004 * 109.47394 * 59.99652 * 23 13 12 42 42 H 1.09002 * 109.47377 * 180.02562 * 24 23 13 43 43 H 1.09004 * 109.47028 * 59.99428 * 24 23 13 44 44 H 1.08998 * 109.47380 * 299.99590 * 25 24 23 45 45 H 1.09004 * 109.46647 * 179.97438 * 25 24 23 46 46 H 1.08997 * 109.47673 * 179.97438 * 26 25 24 47 47 H 1.08998 * 109.47366 * 59.99419 * 26 25 24 48 48 H 1.08997 * 109.47493 * 299.99804 * 27 26 25 49 49 H 1.09004 * 109.47108 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0182 -0.6905 1.1963 5 16 2.4121 0.1775 2.5505 6 6 0.8406 0.8992 3.0984 7 8 2.8605 -0.8026 3.4768 8 8 3.2874 1.1908 2.0751 9 6 2.0324 -0.7105 -1.2303 10 8 2.7296 -1.6965 -1.1190 11 7 1.7069 -0.2501 -2.4545 12 6 2.1948 -0.9411 -3.6506 13 6 1.6155 -0.2716 -4.8984 14 7 1.9275 1.1596 -4.8742 15 6 3.2313 1.5767 -4.9077 16 1 4.0313 0.8525 -4.8634 17 6 3.5248 2.9303 -4.9987 18 7 2.5499 3.8130 -5.0524 19 14 5.3035 3.4994 -5.0438 20 1 6.2026 2.3199 -4.9697 21 1 5.5559 4.2351 -6.3088 22 1 5.5659 4.3957 -3.8892 23 6 2.2281 -0.9061 -6.1486 24 6 1.6483 -0.2370 -7.3964 25 6 0.1304 -0.4283 -7.4190 26 6 -0.4822 0.2061 -6.1688 27 6 0.0976 -0.4630 -4.9210 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 2.1109 -1.6561 1.1951 32 1 0.1314 0.1013 3.3185 33 1 1.0077 1.4950 3.9958 34 1 0.4386 1.5355 2.3100 35 1 1.1495 0.5387 -2.5436 36 1 1.8824 -1.9849 -3.6200 37 1 3.2831 -0.8884 -3.6820 38 1 1.2107 1.8116 -4.8303 39 1 2.7550 4.7589 -5.1164 40 1 3.3094 -0.7703 -6.1322 41 1 1.9959 -1.9709 -6.1667 42 1 2.0844 -0.6894 -8.2871 43 1 1.8800 0.8279 -7.3786 44 1 -0.1014 -1.4932 -7.4368 45 1 -0.2827 0.0487 -8.3077 46 1 -1.5636 0.0703 -6.1850 47 1 -0.2504 1.2710 -6.1510 48 1 -0.1342 -1.5279 -4.9387 49 1 -0.3392 -0.0113 -4.0303 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115748674.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:44:02 Heat of formation + Delta-G solvation = -137.914123 kcal Electronic energy + Delta-G solvation = -30517.555560 eV Core-core repulsion = 26412.339231 eV Total energy + Delta-G solvation = -4105.216328 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.12033 -39.93289 -38.19507 -37.03878 -36.51760 -35.86138 -35.06351 -32.87044 -31.52762 -31.00459 -30.35248 -29.93486 -26.92009 -25.68884 -24.76354 -23.37386 -21.82636 -21.23826 -20.53651 -19.81375 -19.22330 -18.95873 -18.13510 -17.27779 -17.16116 -16.81537 -16.50583 -16.22174 -15.95337 -15.61989 -15.52820 -15.14915 -14.93300 -14.47836 -14.42250 -14.30587 -14.10732 -13.91079 -13.41660 -13.37932 -13.29186 -13.21375 -13.15064 -13.11802 -12.89685 -12.83820 -12.81700 -12.59737 -12.54123 -12.46172 -12.02130 -11.96543 -11.84914 -11.65941 -11.29415 -11.07875 -10.99820 -10.73254 -10.67325 -10.43092 -9.88438 -8.88116 -7.87318 -5.10219 -0.70011 1.42874 1.48463 1.52370 1.64870 1.67244 2.37023 2.59437 2.90427 3.27694 3.46304 3.60376 3.84807 3.96192 4.00080 4.04887 4.07764 4.14313 4.17524 4.19608 4.40640 4.44819 4.52449 4.70207 4.75413 4.79249 4.80707 4.85410 4.94397 4.99793 5.00630 5.06246 5.11222 5.21390 5.25917 5.31613 5.48477 5.53079 5.54900 5.60673 5.64355 5.72067 5.84148 5.99555 6.37004 6.68184 7.30065 7.46551 8.19122 8.45628 9.35003 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011073 B = 0.003526 C = 0.002979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2528.113861 B = 7938.501359 C = 9396.560921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.126 3.874 3 H 0.117 0.883 4 N -1.102 6.102 5 S 2.611 3.389 6 C -0.643 4.643 7 O -0.998 6.998 8 O -1.009 7.009 9 C 0.502 3.498 10 O -0.585 6.585 11 N -0.691 5.691 12 C 0.121 3.879 13 C 0.189 3.811 14 N -0.707 5.707 15 C -0.204 4.204 16 H 0.058 0.942 17 C -0.058 4.058 18 N -0.955 5.955 19 Si 0.938 3.062 20 H -0.282 1.282 21 H -0.297 1.297 22 H -0.302 1.302 23 C -0.114 4.114 24 C -0.106 4.106 25 C -0.108 4.108 26 C -0.112 4.112 27 C -0.106 4.106 28 H 0.102 0.898 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.423 0.577 32 H 0.161 0.839 33 H 0.150 0.850 34 H 0.153 0.847 35 H 0.410 0.590 36 H 0.069 0.931 37 H 0.026 0.974 38 H 0.379 0.621 39 H 0.246 0.754 40 H 0.034 0.966 41 H 0.071 0.929 42 H 0.053 0.947 43 H 0.041 0.959 44 H 0.073 0.927 45 H 0.057 0.943 46 H 0.076 0.924 47 H 0.044 0.956 48 H 0.083 0.917 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.742 -8.551 9.469 19.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.015 3.985 3 H 0.135 0.865 4 N -0.861 5.861 5 S 2.709 3.291 6 C -0.798 4.798 7 O -0.989 6.989 8 O -0.999 6.999 9 C 0.287 3.713 10 O -0.465 6.465 11 N -0.342 5.342 12 C -0.006 4.006 13 C 0.099 3.901 14 N -0.348 5.348 15 C -0.336 4.336 16 H 0.076 0.924 17 C -0.251 4.251 18 N -0.607 5.607 19 Si 0.771 3.229 20 H -0.207 1.207 21 H -0.225 1.225 22 H -0.230 1.230 23 C -0.154 4.154 24 C -0.144 4.144 25 C -0.146 4.146 26 C -0.150 4.150 27 C -0.143 4.143 28 H 0.121 0.879 29 H 0.106 0.894 30 H 0.097 0.903 31 H 0.259 0.741 32 H 0.180 0.820 33 H 0.169 0.831 34 H 0.171 0.829 35 H 0.247 0.753 36 H 0.087 0.913 37 H 0.045 0.955 38 H 0.213 0.787 39 H 0.056 0.944 40 H 0.053 0.947 41 H 0.090 0.910 42 H 0.072 0.928 43 H 0.059 0.941 44 H 0.092 0.908 45 H 0.076 0.924 46 H 0.095 0.905 47 H 0.063 0.937 48 H 0.101 0.899 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -13.179 -8.982 9.862 18.752 hybrid contribution 0.972 1.009 -0.402 1.458 sum -12.207 -7.973 9.460 17.380 Atomic orbital electron populations 1.22458 0.89522 1.05038 1.05768 1.20817 0.97834 0.96818 0.83020 0.86489 1.55267 1.84355 1.20517 1.26003 1.04592 0.78368 0.73524 0.72652 1.30389 1.19806 1.15241 1.14399 1.93561 1.81602 1.60276 1.63473 1.93587 1.64564 1.61792 1.79947 1.21081 0.79911 0.84571 0.85728 1.90638 1.39853 1.28816 1.87240 1.45716 1.52247 1.31543 1.04690 1.21747 0.97528 0.95576 0.85744 1.20036 0.94547 0.84397 0.91170 1.42452 1.03939 1.00953 1.87463 1.19177 0.85707 0.90235 1.38518 0.92381 1.25048 0.98563 0.96639 1.04866 1.69720 1.30450 1.00433 1.60095 0.85602 0.83249 0.77762 0.76331 1.20719 1.22462 1.22954 1.21778 0.99087 0.98978 0.95551 1.21303 0.96337 1.00261 0.96517 1.21453 0.94379 1.00992 0.97727 1.21437 0.99688 0.99474 0.94400 1.21659 0.92585 1.01642 0.98461 0.87905 0.89406 0.90323 0.74105 0.82036 0.83136 0.82850 0.75279 0.91298 0.95520 0.78667 0.94438 0.94688 0.91005 0.92783 0.94061 0.90830 0.92412 0.90534 0.93739 0.89850 0.91250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.01 9.38 71.98 0.67 -1.34 16 2 C 0.13 2.76 3.22 44.24 0.14 2.90 16 3 H 0.12 2.61 7.48 -2.39 -0.02 2.59 16 4 N -1.10 -23.45 5.15 -172.53 -0.89 -24.34 16 5 S 2.61 53.06 6.08 -56.49 -0.34 52.72 16 6 C -0.64 -4.43 10.04 113.37 1.14 -3.30 16 7 O -1.00 -27.31 18.08 -127.65 -2.31 -29.62 16 8 O -1.01 -31.15 17.39 -127.65 -2.22 -33.37 16 9 C 0.50 15.56 7.22 87.66 0.63 16.20 16 10 O -0.58 -22.53 15.99 -3.02 -0.05 -22.58 16 11 N -0.69 -21.03 4.98 -463.07 -2.31 -23.34 16 12 C 0.12 4.05 4.36 86.38 0.38 4.43 16 13 C 0.19 6.11 0.41 3.60 0.00 6.11 16 14 N -0.71 -29.24 3.40 -303.35 -1.03 -30.27 16 15 C -0.20 -10.21 8.70 84.03 0.73 -9.48 16 16 H 0.06 3.03 6.77 -2.91 -0.02 3.01 16 17 C -0.06 -3.14 5.50 84.86 0.47 -2.67 16 18 N -0.96 -53.74 13.07 21.65 0.28 -53.46 16 19 Si 0.94 46.16 29.55 68.60 2.03 48.19 16 20 H -0.28 -13.70 7.11 99.48 0.71 -12.99 16 21 H -0.30 -14.68 7.11 99.48 0.71 -13.97 16 22 H -0.30 -15.19 7.11 99.48 0.71 -14.48 16 23 C -0.11 -3.69 4.52 30.59 0.14 -3.55 16 24 C -0.11 -3.37 5.77 30.60 0.18 -3.19 16 25 C -0.11 -2.71 5.92 30.59 0.18 -2.53 16 26 C -0.11 -2.84 5.75 30.59 0.18 -2.66 16 27 C -0.11 -2.61 4.65 30.60 0.14 -2.46 16 28 H 0.10 0.52 5.78 -2.39 -0.01 0.51 16 29 H 0.09 0.96 7.57 -2.39 -0.02 0.94 16 30 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.42 9.36 8.17 -96.74 -0.79 8.56 16 32 H 0.16 0.30 8.14 -2.39 -0.02 0.28 16 33 H 0.15 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.15 0.55 6.77 -2.39 -0.02 0.54 16 35 H 0.41 11.50 6.81 -92.71 -0.63 10.87 16 36 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 37 H 0.03 1.09 7.50 -2.39 -0.02 1.07 16 38 H 0.38 16.74 6.64 -92.71 -0.62 16.13 16 39 H 0.25 13.82 8.31 -92.71 -0.77 13.05 16 40 H 0.03 1.31 7.23 -2.39 -0.02 1.30 16 41 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 42 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 43 H 0.04 1.66 7.61 -2.39 -0.02 1.64 16 44 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 45 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 46 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 47 H 0.04 1.41 6.93 -2.39 -0.02 1.40 16 48 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 49 H 0.07 1.56 7.28 -2.39 -0.02 1.55 16 Total: -1.00 -79.59 392.72 -2.91 -82.51 By element: Atomic # 1 Polarization: 36.15 SS G_CDS: -1.05 Total: 35.10 kcal Atomic # 6 Polarization: -6.53 SS G_CDS: 4.98 Total: -1.55 kcal Atomic # 7 Polarization: -127.46 SS G_CDS: -3.95 Total: -131.41 kcal Atomic # 8 Polarization: -80.99 SS G_CDS: -4.58 Total: -85.56 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.19 kcal Atomic # 16 Polarization: 53.06 SS G_CDS: -0.34 Total: 52.72 kcal Total: -79.59 -2.91 -82.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115748674.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.406 kcal (2) G-P(sol) polarization free energy of solvation -79.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds