Wall clock time and date at job start Wed Apr 1 2020 04:57:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.58338 * 2 1 4 4 C 1.53189 * 109.58605 * 239.57106 * 2 1 3 5 5 C 1.53035 * 109.31325 * 185.58116 * 4 2 1 6 6 C 1.53044 * 109.54000 * 61.36055 * 5 4 2 7 7 H 1.08997 * 109.49414 * 58.59053 * 6 5 4 8 8 N 1.46499 * 109.52738 * 178.66935 * 6 5 4 9 9 C 1.34770 * 120.00593 * 204.85709 * 8 6 5 10 10 O 1.21287 * 119.99493 * 359.97438 * 9 8 6 11 11 C 1.50701 * 120.00458 * 179.97438 * 9 8 6 12 12 C 1.53005 * 109.46764 * 85.00137 * 11 9 8 13 13 C 1.52998 * 109.47120 * 204.99721 * 11 9 8 14 14 N 1.46496 * 109.47140 * 325.00158 * 11 9 8 15 15 S 1.65597 * 119.99930 * 188.01714 * 14 11 9 16 16 C 1.81398 * 104.44897 * 67.93762 * 15 14 11 17 17 O 1.42099 * 104.27690 * 184.00942 * 15 14 11 18 18 O 1.42101 * 104.27863 * 311.86514 * 15 14 11 19 19 C 1.53190 * 109.31561 * 298.63897 * 6 5 4 20 20 N 1.46926 * 109.58434 * 120.27867 * 2 1 3 21 21 C 1.36937 * 120.63152 * 353.42324 * 20 2 1 22 22 H 1.08002 * 120.00390 * 32.15411 * 21 20 2 23 23 C 1.38814 * 119.99732 * 212.15592 * 21 20 2 24 24 N 1.31622 * 120.00157 * 17.49999 * 23 21 20 25 25 Si 1.86796 * 119.99901 * 197.49809 * 23 21 20 26 26 H 1.48504 * 109.47036 * 90.00085 * 25 23 21 27 27 H 1.48504 * 109.47191 * 209.99987 * 25 23 21 28 28 H 1.48498 * 109.47568 * 330.00330 * 25 23 21 29 29 H 1.09001 * 109.47287 * 299.72141 * 1 2 3 30 30 H 1.09007 * 109.47243 * 59.71477 * 1 2 3 31 31 H 1.09003 * 109.47290 * 179.71864 * 1 2 3 32 32 H 1.09002 * 109.49516 * 305.53022 * 4 2 1 33 33 H 1.08995 * 109.49848 * 65.62699 * 4 2 1 34 34 H 1.09006 * 109.46042 * 301.34732 * 5 4 2 35 35 H 1.08995 * 109.46613 * 181.38628 * 5 4 2 36 36 H 0.97008 * 120.00014 * 24.85874 * 8 6 5 37 37 H 1.08995 * 109.47257 * 52.30658 * 12 11 9 38 38 H 1.09001 * 109.46529 * 172.30623 * 12 11 9 39 39 H 1.08994 * 109.46943 * 292.30055 * 12 11 9 40 40 H 1.09007 * 109.47094 * 73.90435 * 13 11 9 41 41 H 1.08997 * 109.47317 * 193.90266 * 13 11 9 42 42 H 1.09000 * 109.47406 * 313.90861 * 13 11 9 43 43 H 0.97004 * 119.99830 * 8.01756 * 14 11 9 44 44 H 1.09001 * 109.46797 * 50.04926 * 16 15 14 45 45 H 1.09000 * 109.46832 * 170.03963 * 16 15 14 46 46 H 1.08990 * 109.47453 * 290.04337 * 16 15 14 47 47 H 1.09004 * 109.58505 * 294.84649 * 19 6 5 48 48 H 1.08999 * 109.58926 * 174.42287 * 19 6 5 49 49 H 0.96994 * 119.99672 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0435 -0.7310 -1.2445 5 6 3.5674 -0.8495 -1.1690 6 6 3.9568 -1.6657 0.0657 7 1 3.4982 -2.6528 0.0087 8 7 5.4141 -1.8060 0.1204 9 6 5.9669 -2.8465 0.7745 10 8 5.2579 -3.6665 1.3185 11 6 7.4659 -2.9911 0.8302 12 6 8.0158 -2.1588 1.9904 13 6 7.8289 -4.4623 1.0411 14 7 8.0491 -2.5197 -0.4283 15 16 9.6621 -2.7438 -0.7286 16 6 9.8426 -4.5391 -0.9156 17 8 9.8818 -2.0885 -1.9702 18 8 10.3047 -2.2990 0.4583 19 6 3.4650 -0.9453 1.3250 20 7 2.0225 -0.6980 1.1954 21 6 1.1535 -1.1107 2.1700 22 1 0.1511 -1.4143 1.9065 23 6 1.5611 -1.1388 3.4966 24 7 2.6268 -0.4638 3.8722 25 14 0.5970 -2.1346 4.7489 26 1 1.1433 -3.5141 4.8109 27 1 0.7130 -1.4958 6.0846 28 1 -0.8316 -2.1856 4.3471 29 1 -0.3634 0.5095 0.8925 30 1 -0.3634 0.5183 -0.8875 31 1 -0.3634 -1.0277 -0.0050 32 1 1.6029 -1.7270 -1.2891 33 1 1.7660 -0.1696 -2.1366 34 1 4.0061 0.1459 -1.0994 35 1 3.9378 -1.3475 -2.0650 36 1 5.9812 -1.1498 -0.3144 37 1 7.4832 -2.4154 2.9061 38 1 9.0779 -2.3688 2.1168 39 1 7.8781 -1.0993 1.7748 40 1 7.6617 -5.0140 0.1160 41 1 8.8780 -4.5405 1.3263 42 1 7.2054 -4.8808 1.8313 43 1 7.4903 -2.0764 -1.0857 44 1 9.0972 -4.9076 -1.6203 45 1 10.8405 -4.7668 -1.2902 46 1 9.6985 -5.0214 0.0511 47 1 3.9903 0.0038 1.4318 48 1 3.6517 -1.5689 2.1993 49 1 2.9113 -0.4832 4.7993 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132339872.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:37 Heat of formation + Delta-G solvation = -77.950425 kcal Electronic energy + Delta-G solvation = -30881.465169 eV Core-core repulsion = 26778.849062 eV Total energy + Delta-G solvation = -4102.616107 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 2.50 seconds Orbital eigenvalues (eV) -40.22645 -38.01206 -37.40123 -36.37095 -36.10206 -34.56988 -32.82112 -31.04781 -30.65470 -30.07527 -29.87569 -27.09390 -26.20580 -25.08367 -23.37516 -22.27134 -20.62481 -20.10963 -19.43101 -19.31191 -18.41192 -17.30702 -16.58983 -16.43437 -15.87057 -15.65901 -15.12530 -14.99381 -14.41253 -14.19274 -14.02092 -13.83992 -13.76304 -13.53279 -13.37847 -13.30198 -12.99983 -12.66910 -12.56646 -12.44500 -12.34976 -12.12619 -11.90498 -11.74769 -11.69828 -11.47706 -11.44805 -11.25247 -11.13154 -10.92229 -10.73695 -10.56263 -10.42340 -10.27740 -10.00318 -9.96540 -9.79583 -9.48086 -9.36649 -8.64331 -8.43075 -6.59800 -5.76620 -3.22426 -0.02390 2.27766 2.89599 3.23616 3.42113 3.48563 3.49374 3.55430 3.88964 4.32480 4.43409 4.52398 4.54938 4.81262 4.82795 4.92088 5.20517 5.29729 5.33561 5.39835 5.45933 5.53897 5.54857 5.63317 5.78738 5.84205 5.93447 6.03642 6.06838 6.24478 6.26554 6.31136 6.37572 6.42810 6.45638 6.54621 6.60891 6.69134 6.84169 7.04090 7.12200 7.25725 7.63543 7.76107 7.87100 8.43559 8.50434 9.22704 9.86645 10.44117 11.31610 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015161 B = 0.003282 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.392593 B = 8528.616418 C = 9669.387762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.165 3.835 3 H 0.025 0.975 4 C -0.126 4.126 5 C -0.117 4.117 6 C 0.115 3.885 7 H 0.084 0.916 8 N -0.715 5.715 9 C 0.520 3.480 10 O -0.521 6.521 11 C 0.166 3.834 12 C -0.172 4.172 13 C -0.183 4.183 14 N -1.112 6.112 15 S 2.615 3.385 16 C -0.688 4.688 17 O -0.961 6.961 18 O -0.948 6.948 19 C 0.171 3.829 20 N -0.582 5.582 21 C -0.257 4.257 22 H 0.068 0.932 23 C 0.011 3.989 24 N -0.896 5.896 25 Si 0.898 3.102 26 H -0.286 1.286 27 H -0.292 1.292 28 H -0.279 1.279 29 H 0.062 0.938 30 H 0.037 0.963 31 H 0.052 0.948 32 H 0.060 0.940 33 H 0.055 0.945 34 H 0.060 0.940 35 H 0.051 0.949 36 H 0.392 0.608 37 H 0.076 0.924 38 H 0.097 0.903 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.072 0.928 42 H 0.101 0.899 43 H 0.417 0.583 44 H 0.131 0.869 45 H 0.126 0.874 46 H 0.141 0.859 47 H 0.019 0.981 48 H 0.086 0.914 49 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.293 -5.972 -11.473 18.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.058 3.942 3 H 0.043 0.957 4 C -0.165 4.165 5 C -0.155 4.155 6 C 0.010 3.990 7 H 0.102 0.898 8 N -0.366 5.366 9 C 0.302 3.698 10 O -0.395 6.395 11 C 0.074 3.926 12 C -0.231 4.231 13 C -0.241 4.241 14 N -0.873 5.873 15 S 2.707 3.293 16 C -0.837 4.837 17 O -0.951 6.951 18 O -0.938 6.938 19 C 0.044 3.956 20 N -0.305 5.305 21 C -0.387 4.387 22 H 0.086 0.914 23 C -0.188 4.188 24 N -0.539 5.539 25 Si 0.728 3.272 26 H -0.213 1.213 27 H -0.218 1.218 28 H -0.204 1.204 29 H 0.081 0.919 30 H 0.056 0.944 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.070 0.930 36 H 0.226 0.774 37 H 0.095 0.905 38 H 0.116 0.884 39 H 0.090 0.910 40 H 0.093 0.907 41 H 0.091 0.909 42 H 0.120 0.880 43 H 0.253 0.747 44 H 0.149 0.851 45 H 0.145 0.855 46 H 0.159 0.841 47 H 0.037 0.963 48 H 0.104 0.896 49 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 13.555 -5.959 -10.812 18.334 hybrid contribution -0.618 -0.628 0.152 0.894 sum 12.937 -6.587 -10.660 18.011 Atomic orbital electron populations 1.21792 0.95958 1.01336 1.00224 1.20497 0.93124 0.93549 0.87003 0.95741 1.22038 0.94166 1.01329 0.99003 1.21690 0.97574 0.99722 0.96561 1.22062 0.77418 1.01043 0.98483 0.89818 1.46128 1.08814 1.26726 1.54944 1.20101 0.88883 0.81756 0.79028 1.90775 1.62284 1.42221 1.44225 1.20435 0.91733 0.95738 0.84686 1.22529 1.03671 1.00404 0.96518 1.22752 1.02660 0.93610 1.05127 1.55822 1.30022 1.74614 1.26815 1.04741 0.72860 0.77524 0.74179 1.31067 1.11546 1.28145 1.12940 1.93621 1.83896 1.72272 1.45323 1.93608 1.74068 1.78715 1.47458 1.20994 0.83928 0.96713 0.93931 1.43989 1.02462 1.64833 1.19251 1.19085 0.96256 1.37801 0.85555 0.91406 1.25121 0.98036 0.98556 0.97136 1.70033 1.26808 1.40710 1.16363 0.86372 0.79671 0.80322 0.80875 1.21282 1.21820 1.20392 0.91938 0.94400 0.92866 0.92078 0.92630 0.92162 0.93001 0.77408 0.90513 0.88392 0.91044 0.90745 0.90940 0.87984 0.74736 0.85083 0.85543 0.84082 0.96309 0.89619 0.93709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 7.97 37.16 0.30 -2.22 16 2 C 0.16 3.31 3.50 -67.60 -0.24 3.07 16 3 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 4 C -0.13 -2.06 5.37 -26.62 -0.14 -2.20 16 5 C -0.12 -1.79 5.36 -26.69 -0.14 -1.93 16 6 C 0.11 2.10 2.60 -67.81 -0.18 1.92 16 7 H 0.08 1.74 7.58 -51.93 -0.39 1.34 16 8 N -0.72 -10.61 4.80 -53.69 -0.26 -10.87 16 9 C 0.52 8.06 6.63 -10.99 -0.07 7.99 16 10 O -0.52 -10.35 15.47 5.55 0.09 -10.26 16 11 C 0.17 1.89 1.05 -132.97 -0.14 1.74 16 12 C -0.17 -2.09 8.08 37.16 0.30 -1.79 16 13 C -0.18 -1.71 6.56 37.16 0.24 -1.47 16 14 N -1.11 -9.91 5.31 -0.40 0.00 -9.92 16 15 S 2.62 22.19 5.79 -107.50 -0.62 21.57 16 16 C -0.69 -3.49 9.21 101.05 0.93 -2.56 16 17 O -0.96 -11.20 18.08 -57.54 -1.04 -12.24 16 18 O -0.95 -10.69 15.05 -57.54 -0.87 -11.55 16 19 C 0.17 4.00 4.86 -3.71 -0.02 3.98 16 20 N -0.58 -14.16 2.97 -164.78 -0.49 -14.65 16 21 C -0.26 -6.94 8.47 -15.06 -0.13 -7.07 16 22 H 0.07 1.80 6.34 -52.49 -0.33 1.46 16 23 C 0.01 0.32 4.86 -17.43 -0.08 0.23 16 24 N -0.90 -26.12 11.55 55.49 0.64 -25.48 16 25 Si 0.90 22.06 29.59 -169.99 -5.03 17.03 16 26 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 27 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 28 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 29 H 0.06 1.27 7.65 -51.93 -0.40 0.87 16 30 H 0.04 0.58 8.14 -51.92 -0.42 0.15 16 31 H 0.05 1.00 7.43 -51.93 -0.39 0.62 16 32 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.39 4.61 7.21 -40.82 -0.29 4.32 16 37 H 0.08 1.00 8.13 -51.93 -0.42 0.58 16 38 H 0.10 1.10 5.80 -51.93 -0.30 0.80 16 39 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.07 0.56 6.98 -51.93 -0.36 0.20 16 41 H 0.07 0.49 5.83 -51.93 -0.30 0.19 16 42 H 0.10 1.13 7.34 -51.93 -0.38 0.75 16 43 H 0.42 3.29 7.14 -34.47 -0.25 3.04 16 44 H 0.13 0.52 8.01 -51.92 -0.42 0.10 16 45 H 0.13 0.45 8.14 -51.92 -0.42 0.03 16 46 H 0.14 0.62 4.89 -51.93 -0.25 0.36 16 47 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 48 H 0.09 2.36 6.40 -51.93 -0.33 2.03 16 49 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 382.74 15.07 5.77 5.77 Total: -1.00 -35.79 382.74 -8.94 -44.74 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -7.76 Total: 6.18 kcal Atomic # 6 Polarization: -0.94 SS G_CDS: 0.63 Total: -0.31 kcal Atomic # 7 Polarization: -60.81 SS G_CDS: -0.11 Total: -60.92 kcal Atomic # 8 Polarization: -32.24 SS G_CDS: -1.82 Total: -34.06 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.03 Total: 17.03 kcal Atomic # 16 Polarization: 22.19 SS G_CDS: -0.62 Total: 21.57 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.79 -8.94 -44.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132339872.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.211 kcal (2) G-P(sol) polarization free energy of solvation -35.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.50 seconds