Wall clock time and date at job start Wed Apr 1 2020 04:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.58338 * 2 1 4 4 C 1.53189 * 109.58605 * 239.57106 * 2 1 3 5 5 C 1.53035 * 109.31325 * 185.58116 * 4 2 1 6 6 C 1.53044 * 109.54000 * 61.36055 * 5 4 2 7 7 H 1.08997 * 109.49414 * 58.59053 * 6 5 4 8 8 N 1.46499 * 109.52738 * 178.66935 * 6 5 4 9 9 C 1.34770 * 120.00593 * 204.85709 * 8 6 5 10 10 O 1.21287 * 119.99493 * 359.97438 * 9 8 6 11 11 C 1.50701 * 120.00458 * 179.97438 * 9 8 6 12 12 C 1.53005 * 109.46764 * 85.00137 * 11 9 8 13 13 C 1.52998 * 109.47120 * 204.99721 * 11 9 8 14 14 N 1.46496 * 109.47140 * 325.00158 * 11 9 8 15 15 S 1.65597 * 119.99930 * 188.01714 * 14 11 9 16 16 C 1.81398 * 104.44897 * 67.93762 * 15 14 11 17 17 O 1.42099 * 104.27690 * 184.00942 * 15 14 11 18 18 O 1.42101 * 104.27863 * 311.86514 * 15 14 11 19 19 C 1.53190 * 109.31561 * 298.63897 * 6 5 4 20 20 N 1.46926 * 109.58434 * 120.27867 * 2 1 3 21 21 C 1.36937 * 120.63152 * 353.42324 * 20 2 1 22 22 H 1.08002 * 120.00390 * 32.15411 * 21 20 2 23 23 C 1.38814 * 119.99732 * 212.15592 * 21 20 2 24 24 N 1.31622 * 120.00157 * 17.49999 * 23 21 20 25 25 Si 1.86796 * 119.99901 * 197.49809 * 23 21 20 26 26 H 1.48504 * 109.47036 * 90.00085 * 25 23 21 27 27 H 1.48504 * 109.47191 * 209.99987 * 25 23 21 28 28 H 1.48498 * 109.47568 * 330.00330 * 25 23 21 29 29 H 1.09001 * 109.47287 * 299.72141 * 1 2 3 30 30 H 1.09007 * 109.47243 * 59.71477 * 1 2 3 31 31 H 1.09003 * 109.47290 * 179.71864 * 1 2 3 32 32 H 1.09002 * 109.49516 * 305.53022 * 4 2 1 33 33 H 1.08995 * 109.49848 * 65.62699 * 4 2 1 34 34 H 1.09006 * 109.46042 * 301.34732 * 5 4 2 35 35 H 1.08995 * 109.46613 * 181.38628 * 5 4 2 36 36 H 0.97008 * 120.00014 * 24.85874 * 8 6 5 37 37 H 1.08995 * 109.47257 * 52.30658 * 12 11 9 38 38 H 1.09001 * 109.46529 * 172.30623 * 12 11 9 39 39 H 1.08994 * 109.46943 * 292.30055 * 12 11 9 40 40 H 1.09007 * 109.47094 * 73.90435 * 13 11 9 41 41 H 1.08997 * 109.47317 * 193.90266 * 13 11 9 42 42 H 1.09000 * 109.47406 * 313.90861 * 13 11 9 43 43 H 0.97004 * 119.99830 * 8.01756 * 14 11 9 44 44 H 1.09001 * 109.46797 * 50.04926 * 16 15 14 45 45 H 1.09000 * 109.46832 * 170.03963 * 16 15 14 46 46 H 1.08990 * 109.47453 * 290.04337 * 16 15 14 47 47 H 1.09004 * 109.58505 * 294.84649 * 19 6 5 48 48 H 1.08999 * 109.58926 * 174.42287 * 19 6 5 49 49 H 0.96994 * 119.99672 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0435 -0.7310 -1.2445 5 6 3.5674 -0.8495 -1.1690 6 6 3.9568 -1.6657 0.0657 7 1 3.4982 -2.6528 0.0087 8 7 5.4141 -1.8060 0.1204 9 6 5.9669 -2.8465 0.7745 10 8 5.2579 -3.6665 1.3185 11 6 7.4659 -2.9911 0.8302 12 6 8.0158 -2.1588 1.9904 13 6 7.8289 -4.4623 1.0411 14 7 8.0491 -2.5197 -0.4283 15 16 9.6621 -2.7438 -0.7286 16 6 9.8426 -4.5391 -0.9156 17 8 9.8818 -2.0885 -1.9702 18 8 10.3047 -2.2990 0.4583 19 6 3.4650 -0.9453 1.3250 20 7 2.0225 -0.6980 1.1954 21 6 1.1535 -1.1107 2.1700 22 1 0.1511 -1.4143 1.9065 23 6 1.5611 -1.1388 3.4966 24 7 2.6268 -0.4638 3.8722 25 14 0.5970 -2.1346 4.7489 26 1 1.1433 -3.5141 4.8109 27 1 0.7130 -1.4958 6.0846 28 1 -0.8316 -2.1856 4.3471 29 1 -0.3634 0.5095 0.8925 30 1 -0.3634 0.5183 -0.8875 31 1 -0.3634 -1.0277 -0.0050 32 1 1.6029 -1.7270 -1.2891 33 1 1.7660 -0.1696 -2.1366 34 1 4.0061 0.1459 -1.0994 35 1 3.9378 -1.3475 -2.0650 36 1 5.9812 -1.1498 -0.3144 37 1 7.4832 -2.4154 2.9061 38 1 9.0779 -2.3688 2.1168 39 1 7.8781 -1.0993 1.7748 40 1 7.6617 -5.0140 0.1160 41 1 8.8780 -4.5405 1.3263 42 1 7.2054 -4.8808 1.8313 43 1 7.4903 -2.0764 -1.0857 44 1 9.0972 -4.9076 -1.6203 45 1 10.8405 -4.7668 -1.2902 46 1 9.6985 -5.0214 0.0511 47 1 3.9903 0.0038 1.4318 48 1 3.6517 -1.5689 2.1993 49 1 2.9113 -0.4832 4.7993 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132339872.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:36 Heat of formation + Delta-G solvation = -107.281756 kcal Electronic energy + Delta-G solvation = -30882.737071 eV Core-core repulsion = 26778.849062 eV Total energy + Delta-G solvation = -4103.888009 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.47294 -39.49408 -38.28445 -37.35227 -36.92838 -36.09210 -34.64227 -32.23455 -31.78410 -31.64357 -30.67215 -27.91960 -27.81885 -26.86949 -24.65187 -23.87389 -22.10379 -21.37117 -20.78532 -20.20582 -19.41721 -18.37641 -18.11639 -17.40030 -17.22138 -16.70578 -16.59384 -16.18303 -15.85819 -15.49963 -15.39743 -15.14063 -14.96597 -14.55418 -14.55045 -14.40003 -14.11931 -13.96344 -13.75624 -13.47441 -13.41802 -13.14953 -13.09648 -12.91117 -12.75708 -12.74787 -12.60397 -12.56652 -12.48265 -12.36621 -12.29932 -12.11791 -11.96570 -11.91005 -11.66410 -11.41402 -11.13543 -10.80415 -10.64837 -10.54970 -10.12119 -8.59896 -7.86569 -5.34289 -0.66599 1.37580 1.41553 1.45527 1.51265 1.80731 2.05010 2.50160 2.90152 3.26130 3.28541 3.38832 3.66641 3.80938 3.86218 3.93775 3.98194 4.09422 4.15591 4.23410 4.26025 4.38936 4.54733 4.61031 4.70903 4.72431 4.80016 4.83024 4.89035 4.89104 5.00806 5.01065 5.07503 5.18349 5.25750 5.29209 5.30941 5.32407 5.43204 5.54816 5.59266 5.71574 5.76091 5.83391 6.41426 6.54060 7.15048 7.22091 7.88891 8.40330 9.18505 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015161 B = 0.003282 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.392593 B = 8528.616418 C = 9669.387762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.153 3.847 3 H 0.018 0.982 4 C -0.117 4.117 5 C -0.110 4.110 6 C 0.130 3.870 7 H 0.059 0.941 8 N -0.706 5.706 9 C 0.516 3.484 10 O -0.568 6.568 11 C 0.180 3.820 12 C -0.174 4.174 13 C -0.189 4.189 14 N -1.109 6.109 15 S 2.621 3.379 16 C -0.669 4.669 17 O -0.993 6.993 18 O -0.982 6.982 19 C 0.183 3.817 20 N -0.602 5.602 21 C -0.254 4.254 22 H 0.071 0.929 23 C -0.046 4.046 24 N -0.930 5.930 25 Si 0.953 3.047 26 H -0.294 1.294 27 H -0.295 1.295 28 H -0.263 1.263 29 H 0.035 0.965 30 H 0.077 0.923 31 H 0.046 0.954 32 H 0.055 0.945 33 H 0.094 0.906 34 H 0.070 0.930 35 H 0.090 0.910 36 H 0.410 0.590 37 H 0.058 0.942 38 H 0.111 0.889 39 H 0.063 0.937 40 H 0.098 0.902 41 H 0.102 0.898 42 H 0.081 0.919 43 H 0.422 0.578 44 H 0.152 0.848 45 H 0.150 0.850 46 H 0.154 0.846 47 H -0.004 1.004 48 H 0.034 0.966 49 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.046 -7.101 -14.462 21.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.048 3.952 3 H 0.036 0.964 4 C -0.156 4.156 5 C -0.148 4.148 6 C 0.024 3.976 7 H 0.077 0.923 8 N -0.358 5.358 9 C 0.300 3.700 10 O -0.446 6.446 11 C 0.088 3.912 12 C -0.233 4.233 13 C -0.247 4.247 14 N -0.869 5.869 15 S 2.717 3.283 16 C -0.823 4.823 17 O -0.984 6.984 18 O -0.972 6.972 19 C 0.056 3.944 20 N -0.326 5.326 21 C -0.385 4.385 22 H 0.089 0.911 23 C -0.242 4.242 24 N -0.576 5.576 25 Si 0.782 3.218 26 H -0.221 1.221 27 H -0.221 1.221 28 H -0.187 1.187 29 H 0.055 0.945 30 H 0.096 0.904 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.113 0.887 34 H 0.089 0.911 35 H 0.109 0.891 36 H 0.246 0.754 37 H 0.077 0.923 38 H 0.130 0.870 39 H 0.082 0.918 40 H 0.117 0.883 41 H 0.121 0.879 42 H 0.100 0.900 43 H 0.258 0.742 44 H 0.170 0.830 45 H 0.168 0.832 46 H 0.172 0.828 47 H 0.014 0.986 48 H 0.053 0.947 49 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 14.305 -7.021 -13.853 21.114 hybrid contribution -0.839 -0.269 1.038 1.361 sum 13.466 -7.290 -12.815 19.968 Atomic orbital electron populations 1.21723 0.94841 1.01136 1.00899 1.20807 0.94251 0.93276 0.86893 0.96428 1.21933 0.94598 1.00936 0.98156 1.21676 0.97106 0.99987 0.96033 1.21559 0.79082 0.99437 0.97508 0.92280 1.45976 1.07762 1.27176 1.54877 1.20878 0.90636 0.80877 0.77596 1.90753 1.63937 1.43943 1.45957 1.20208 0.88363 0.97290 0.85368 1.22564 1.04253 1.00197 0.96271 1.22884 1.04122 0.91856 1.05848 1.55684 1.30169 1.75124 1.25906 1.04419 0.71901 0.79183 0.72773 1.30885 1.13856 1.22984 1.14533 1.93582 1.84055 1.74501 1.46247 1.93562 1.74448 1.80654 1.48513 1.20695 0.83939 0.95011 0.94745 1.44291 1.02457 1.65720 1.20136 1.19408 0.96643 1.36208 0.86231 0.91104 1.25816 0.99313 1.00091 0.99006 1.70175 1.28651 1.42757 1.16011 0.85475 0.79279 0.78310 0.78730 1.22147 1.22115 1.18694 0.94539 0.90401 0.93459 0.92655 0.88725 0.91128 0.89134 0.75350 0.92294 0.87033 0.91762 0.88327 0.87923 0.90019 0.74156 0.83000 0.83177 0.82782 0.98591 0.94698 0.94576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.61 7.97 71.98 0.57 -4.03 16 2 C 0.15 6.00 3.50 44.97 0.16 6.16 16 3 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 4 C -0.12 -3.49 5.37 30.67 0.16 -3.33 16 5 C -0.11 -3.06 5.36 30.62 0.16 -2.90 16 6 C 0.13 4.77 2.60 45.07 0.12 4.89 16 7 H 0.06 2.49 7.58 -2.39 -0.02 2.47 16 8 N -0.71 -20.89 4.80 -442.17 -2.12 -23.01 16 9 C 0.52 16.24 6.63 87.66 0.58 16.82 16 10 O -0.57 -23.56 15.47 -3.05 -0.05 -23.61 16 11 C 0.18 3.97 1.05 2.86 0.00 3.98 16 12 C -0.17 -4.29 8.08 71.98 0.58 -3.71 16 13 C -0.19 -3.20 6.56 71.98 0.47 -2.73 16 14 N -1.11 -17.89 5.31 -155.18 -0.82 -18.72 16 15 S 2.62 38.85 5.79 -56.49 -0.33 38.52 16 16 C -0.67 -3.90 9.21 113.37 1.04 -2.86 16 17 O -0.99 -21.45 18.08 -127.65 -2.31 -23.76 16 18 O -0.98 -20.73 15.05 -127.65 -1.92 -22.66 16 19 C 0.18 8.94 4.86 86.36 0.42 9.36 16 20 N -0.60 -30.05 2.97 -675.23 -2.00 -32.05 16 21 C -0.25 -14.13 8.47 84.03 0.71 -13.42 16 22 H 0.07 3.81 6.34 -2.91 -0.02 3.80 16 23 C -0.05 -2.68 4.86 84.86 0.41 -2.27 16 24 N -0.93 -57.21 11.55 21.65 0.25 -56.96 16 25 Si 0.95 46.99 29.59 68.60 2.03 49.02 16 26 H -0.29 -14.74 7.11 99.48 0.71 -14.03 16 27 H -0.29 -14.52 7.11 99.48 0.71 -13.81 16 28 H -0.26 -12.10 7.11 99.48 0.71 -11.40 16 29 H 0.04 1.46 7.65 -2.39 -0.02 1.44 16 30 H 0.08 2.15 8.14 -2.38 -0.02 2.13 16 31 H 0.05 1.72 7.43 -2.39 -0.02 1.71 16 32 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 34 H 0.07 1.86 8.14 -2.38 -0.02 1.85 16 35 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.41 9.21 7.21 -92.70 -0.67 8.54 16 37 H 0.06 1.64 8.13 -2.39 -0.02 1.62 16 38 H 0.11 2.46 5.80 -2.39 -0.01 2.45 16 39 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.10 1.18 6.98 -2.38 -0.02 1.16 16 41 H 0.10 1.08 5.83 -2.39 -0.01 1.07 16 42 H 0.08 1.79 7.34 -2.39 -0.02 1.77 16 43 H 0.42 5.87 7.14 -96.74 -0.69 5.18 16 44 H 0.15 0.42 8.01 -2.39 -0.02 0.40 16 45 H 0.15 0.34 8.14 -2.39 -0.02 0.32 16 46 H 0.15 0.62 4.89 -2.40 -0.01 0.60 16 47 H 0.00 -0.20 8.14 -2.38 -0.02 -0.22 16 48 H 0.03 2.04 6.40 -2.39 -0.02 2.03 16 49 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 Total: -1.00 -83.82 382.74 -2.25 -86.07 By element: Atomic # 1 Polarization: 21.58 SS G_CDS: -0.38 Total: 21.19 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: 5.40 Total: 5.96 kcal Atomic # 7 Polarization: -126.04 SS G_CDS: -4.70 Total: -130.74 kcal Atomic # 8 Polarization: -65.75 SS G_CDS: -4.28 Total: -70.03 kcal Atomic # 14 Polarization: 46.99 SS G_CDS: 2.03 Total: 49.02 kcal Atomic # 16 Polarization: 38.85 SS G_CDS: -0.33 Total: 38.52 kcal Total: -83.82 -2.25 -86.07 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132339872.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.209 kcal (2) G-P(sol) polarization free energy of solvation -83.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds