Wall clock time and date at job start Wed Apr 1 2020 04:57:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.58551 * 2 1 4 4 C 1.53188 * 109.58977 * 239.71043 * 2 1 3 5 5 C 1.53040 * 109.31565 * 185.43491 * 4 2 1 6 6 C 1.53047 * 109.53412 * 61.36926 * 5 4 2 7 7 H 1.08998 * 109.49553 * 178.65339 * 6 5 4 8 8 N 1.46499 * 109.49736 * 58.58662 * 6 5 4 9 9 C 1.34775 * 119.99969 * 155.00070 * 8 6 5 10 10 O 1.21278 * 119.99898 * 0.02562 * 9 8 6 11 11 C 1.50703 * 120.00143 * 179.97438 * 9 8 6 12 12 C 1.53008 * 109.47016 * 84.99770 * 11 9 8 13 13 C 1.53000 * 109.47346 * 204.99821 * 11 9 8 14 14 N 1.46495 * 109.46925 * 325.00101 * 11 9 8 15 15 S 1.65607 * 119.99839 * 159.09331 * 14 11 9 16 16 C 1.81398 * 104.45085 * 60.22593 * 15 14 11 17 17 O 1.42103 * 104.27468 * 176.29537 * 15 14 11 18 18 O 1.42102 * 104.27614 * 304.15303 * 15 14 11 19 19 C 1.53194 * 109.30952 * 298.63596 * 6 5 4 20 20 N 1.46924 * 108.77690 * 54.63950 * 19 6 5 21 21 C 1.36937 * 120.63085 * 126.41191 * 20 19 6 22 22 H 1.07999 * 119.99772 * 212.17497 * 21 20 19 23 23 C 1.38809 * 120.00044 * 32.17911 * 21 20 19 24 24 N 1.31623 * 120.00181 * 16.80293 * 23 21 20 25 25 Si 1.86801 * 119.99987 * 196.80304 * 23 21 20 26 26 H 1.48504 * 109.47124 * 59.99576 * 25 23 21 27 27 H 1.48501 * 109.47251 * 180.02562 * 25 23 21 28 28 H 1.48503 * 109.47291 * 300.00113 * 25 23 21 29 29 H 1.09009 * 109.47461 * 180.28257 * 1 2 3 30 30 H 1.08999 * 109.47363 * 300.28759 * 1 2 3 31 31 H 1.09004 * 109.46994 * 60.28586 * 1 2 3 32 32 H 1.09003 * 109.49290 * 65.48679 * 4 2 1 33 33 H 1.09005 * 109.52538 * 305.40835 * 4 2 1 34 34 H 1.08996 * 109.45969 * 301.35365 * 5 4 2 35 35 H 1.09000 * 109.45068 * 181.37861 * 5 4 2 36 36 H 0.97002 * 120.00253 * 334.99808 * 8 6 5 37 37 H 1.08994 * 109.47130 * 179.97438 * 12 11 9 38 38 H 1.08998 * 109.46741 * 300.00423 * 12 11 9 39 39 H 1.09006 * 109.46772 * 60.00393 * 12 11 9 40 40 H 1.09001 * 109.46987 * 306.62113 * 13 11 9 41 41 H 1.09004 * 109.46852 * 66.61229 * 13 11 9 42 42 H 1.08993 * 109.47360 * 186.61831 * 13 11 9 43 43 H 0.96999 * 120.00443 * 339.08632 * 14 11 9 44 44 H 1.08998 * 109.47272 * 49.74259 * 16 15 14 45 45 H 1.08998 * 109.47244 * 169.75007 * 16 15 14 46 46 H 1.09001 * 109.46800 * 289.74790 * 16 15 14 47 47 H 1.09005 * 109.58321 * 174.42238 * 19 6 5 48 48 H 1.08995 * 109.58654 * 294.84247 * 19 6 5 49 49 H 0.96999 * 119.99829 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7279 -1.2462 5 6 3.5679 -0.8434 -1.1728 6 6 3.9603 -1.6609 0.0602 7 1 5.0448 -1.7631 0.0988 8 7 3.3465 -2.9888 -0.0179 9 6 3.9058 -4.0290 0.6314 10 8 4.9170 -3.8656 1.2807 11 6 3.2741 -5.3949 0.5515 12 6 3.7621 -6.1095 -0.7104 13 6 3.6671 -6.2114 1.7843 14 7 1.8166 -5.2566 0.5016 15 16 0.8878 -6.4902 -0.0967 16 6 1.2489 -7.8969 0.9902 17 8 -0.4487 -6.0454 0.0909 18 8 1.4074 -6.7201 -1.3992 19 6 3.4684 -0.9435 1.3212 20 7 2.0252 -0.6991 1.1937 21 6 1.1584 -1.1144 2.1690 22 1 0.1562 -1.4196 1.9065 23 6 1.5677 -1.1429 3.4951 24 7 2.6405 -0.4772 3.8672 25 14 0.5959 -2.1260 4.7515 26 1 0.5743 -3.5561 4.3518 27 1 1.2352 -1.9939 6.0854 28 1 -0.7948 -1.6092 4.8164 29 1 -0.3634 -1.0277 0.0051 30 1 -0.3634 0.5183 0.8874 31 1 -0.3633 0.5094 -0.8926 32 1 1.7639 -0.1655 -2.1371 33 1 1.6049 -1.7247 -1.2926 34 1 4.0045 0.1527 -1.1020 35 1 3.9379 -1.3394 -2.0701 36 1 2.5375 -3.1194 -0.5370 37 1 3.3056 -7.0975 -0.7679 38 1 3.4821 -5.5277 -1.5885 39 1 4.8466 -6.2124 -0.6732 40 1 4.7523 -6.2153 1.8868 41 1 3.2199 -5.7658 2.6729 42 1 3.3092 -7.2347 1.6716 43 1 1.3954 -4.4425 0.8191 44 1 1.1515 -7.5867 2.0305 45 1 0.5465 -8.7047 0.7845 46 1 2.2658 -8.2447 0.8085 47 1 3.6574 -1.5683 2.1942 48 1 3.9919 0.0064 1.4289 49 1 2.9262 -0.4969 4.7940 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132339873.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:43 Heat of formation + Delta-G solvation = -78.506318 kcal Electronic energy + Delta-G solvation = -32254.030175 eV Core-core repulsion = 28151.389962 eV Total energy + Delta-G solvation = -4102.640213 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -40.07724 -38.03732 -37.23725 -36.15248 -35.91682 -34.18195 -32.73272 -30.82175 -30.51946 -29.94656 -29.63189 -27.27887 -26.28472 -25.02377 -23.46144 -22.19033 -20.54186 -20.05671 -19.27326 -18.72814 -18.31466 -17.17769 -16.45789 -16.22281 -15.82015 -15.44040 -15.08880 -14.69376 -14.21475 -14.18383 -14.02674 -13.87036 -13.56153 -13.44236 -13.32037 -13.06701 -12.98306 -12.73301 -12.50014 -12.37206 -12.15711 -11.95168 -11.93347 -11.62770 -11.58136 -11.26510 -11.23053 -11.14302 -11.08845 -10.98943 -10.87154 -10.73109 -10.40139 -10.34183 -9.98261 -9.81630 -9.55972 -9.47539 -9.21153 -8.46535 -8.41812 -6.57818 -5.78001 -3.23551 0.16838 2.48438 3.10751 3.35501 3.42469 3.43045 3.54645 3.69442 4.07019 4.47897 4.49830 4.60261 4.74032 4.88829 5.02526 5.16293 5.30055 5.34507 5.38785 5.44021 5.47231 5.50476 5.58682 5.69576 5.72301 5.96423 6.01360 6.11360 6.15804 6.17283 6.24994 6.34133 6.37300 6.45609 6.50890 6.61901 6.67745 6.86320 6.92748 7.07663 7.14100 7.34130 7.60327 7.83679 8.02485 8.48354 8.67898 9.21766 9.85740 10.44750 11.29927 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.009976 B = 0.005408 C = 0.004835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2805.983012 B = 5176.636079 C = 5789.644969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.165 3.835 3 H 0.025 0.975 4 C -0.132 4.132 5 C -0.119 4.119 6 C 0.116 3.884 7 H 0.076 0.924 8 N -0.692 5.692 9 C 0.523 3.477 10 O -0.538 6.538 11 C 0.161 3.839 12 C -0.168 4.168 13 C -0.170 4.170 14 N -1.110 6.110 15 S 2.611 3.389 16 C -0.681 4.681 17 O -0.955 6.955 18 O -0.954 6.954 19 C 0.166 3.834 20 N -0.581 5.581 21 C -0.256 4.256 22 H 0.067 0.933 23 C 0.011 3.989 24 N -0.895 5.895 25 Si 0.893 3.107 26 H -0.284 1.284 27 H -0.292 1.292 28 H -0.282 1.282 29 H 0.052 0.948 30 H 0.061 0.939 31 H 0.036 0.964 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.071 0.929 35 H 0.052 0.948 36 H 0.398 0.602 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.086 0.914 41 H 0.073 0.927 42 H 0.065 0.935 43 H 0.430 0.570 44 H 0.134 0.866 45 H 0.127 0.873 46 H 0.133 0.867 47 H 0.088 0.912 48 H 0.027 0.973 49 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.738 -12.068 -9.243 15.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.058 3.942 3 H 0.042 0.958 4 C -0.171 4.171 5 C -0.157 4.157 6 C 0.011 3.989 7 H 0.094 0.906 8 N -0.343 5.343 9 C 0.306 3.694 10 O -0.415 6.415 11 C 0.069 3.931 12 C -0.226 4.226 13 C -0.229 4.229 14 N -0.872 5.872 15 S 2.703 3.297 16 C -0.830 4.830 17 O -0.946 6.946 18 O -0.944 6.944 19 C 0.039 3.961 20 N -0.304 5.304 21 C -0.386 4.386 22 H 0.085 0.915 23 C -0.189 4.189 24 N -0.538 5.538 25 Si 0.722 3.278 26 H -0.210 1.210 27 H -0.218 1.218 28 H -0.209 1.209 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.055 0.945 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.089 0.911 35 H 0.070 0.930 36 H 0.233 0.767 37 H 0.095 0.905 38 H 0.101 0.899 39 H 0.096 0.904 40 H 0.105 0.895 41 H 0.092 0.908 42 H 0.084 0.916 43 H 0.268 0.732 44 H 0.152 0.848 45 H 0.146 0.854 46 H 0.151 0.849 47 H 0.107 0.893 48 H 0.044 0.956 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 1.040 -11.994 -9.397 15.273 hybrid contribution -0.727 -0.457 1.372 1.618 sum 0.313 -12.451 -8.026 14.817 Atomic orbital electron populations 1.21791 0.96035 1.01347 1.00156 1.20471 0.92936 0.93622 0.87124 0.95782 1.22081 0.95099 1.00724 0.99218 1.21689 0.97064 1.00152 0.96756 1.21835 0.97013 0.81713 0.98382 0.90551 1.45875 1.29257 1.08467 1.50674 1.19977 0.84740 0.85316 0.79380 1.90699 1.25369 1.84426 1.40958 1.20447 0.79381 0.95547 0.97716 1.22511 1.02788 1.01366 0.95969 1.22472 1.04454 0.98782 0.97160 1.55738 1.14956 1.33700 1.82834 1.04822 0.73381 0.75784 0.75727 1.30820 1.12247 1.21375 1.18596 1.93637 1.34910 1.79174 1.86842 1.93645 1.79762 1.85601 1.35429 1.21092 0.84085 0.96910 0.94035 1.44001 1.02468 1.64873 1.19069 1.19010 0.96296 1.37679 0.85566 0.91529 1.25114 0.97920 0.98816 0.97074 1.70004 1.26177 1.41108 1.16484 0.86539 0.79656 0.80503 0.81057 1.21024 1.21787 1.20870 0.92871 0.92037 0.94456 0.92781 0.92712 0.91062 0.92967 0.76673 0.90515 0.89892 0.90393 0.89488 0.90754 0.91624 0.73195 0.84752 0.85398 0.84893 0.89343 0.95553 0.93646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 7.97 37.16 0.30 -2.16 16 2 C 0.17 3.19 3.49 -67.60 -0.24 2.96 16 3 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 4 C -0.13 -2.08 5.20 -26.61 -0.14 -2.22 16 5 C -0.12 -1.82 5.59 -26.69 -0.15 -1.97 16 6 C 0.12 2.11 2.81 -67.81 -0.19 1.92 16 7 H 0.08 1.42 7.58 -51.93 -0.39 1.03 16 8 N -0.69 -11.66 4.65 -53.69 -0.25 -11.91 16 9 C 0.52 8.94 6.57 -10.99 -0.07 8.86 16 10 O -0.54 -10.94 15.61 5.56 0.09 -10.85 16 11 C 0.16 2.12 1.08 -132.97 -0.14 1.98 16 12 C -0.17 -1.88 7.09 37.16 0.26 -1.62 16 13 C -0.17 -2.01 7.98 37.16 0.30 -1.71 16 14 N -1.11 -14.30 4.86 -0.40 0.00 -14.30 16 15 S 2.61 29.91 5.65 -107.50 -0.61 29.30 16 16 C -0.68 -5.08 9.11 101.05 0.92 -4.16 16 17 O -0.96 -14.65 18.08 -57.54 -1.04 -15.69 16 18 O -0.95 -12.38 14.50 -57.54 -0.83 -13.22 16 19 C 0.17 3.77 4.88 -3.71 -0.02 3.75 16 20 N -0.58 -13.23 2.89 -164.78 -0.48 -13.70 16 21 C -0.26 -6.48 8.50 -15.06 -0.13 -6.61 16 22 H 0.07 1.67 6.33 -52.49 -0.33 1.33 16 23 C 0.01 0.29 4.88 -17.43 -0.09 0.20 16 24 N -0.89 -25.50 11.50 55.49 0.64 -24.86 16 25 Si 0.89 21.28 29.59 -169.99 -5.03 16.25 16 26 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 27 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 28 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 29 H 0.05 0.97 7.40 -51.92 -0.38 0.59 16 30 H 0.06 1.22 7.69 -51.93 -0.40 0.82 16 31 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.05 0.86 6.40 -51.93 -0.33 0.53 16 34 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.40 6.22 5.91 -40.82 -0.24 5.98 16 37 H 0.08 0.72 5.33 -51.93 -0.28 0.45 16 38 H 0.08 0.99 7.77 -51.93 -0.40 0.59 16 39 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.09 1.06 7.62 -51.93 -0.40 0.67 16 41 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.07 0.54 4.70 -51.93 -0.24 0.29 16 43 H 0.43 6.25 8.13 -34.47 -0.28 5.97 16 44 H 0.13 0.94 8.09 -51.92 -0.42 0.52 16 45 H 0.13 0.71 8.14 -51.92 -0.42 0.29 16 46 H 0.13 0.76 5.74 -51.92 -0.30 0.47 16 47 H 0.09 2.36 6.38 -51.93 -0.33 2.03 16 48 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 49 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 380.49 15.07 5.73 5.73 Total: -1.00 -33.41 380.49 -8.84 -42.25 By element: Atomic # 1 Polarization: 19.46 SS G_CDS: -7.67 Total: 11.79 kcal Atomic # 6 Polarization: -1.40 SS G_CDS: 0.62 Total: -0.79 kcal Atomic # 7 Polarization: -64.69 SS G_CDS: -0.09 Total: -64.77 kcal Atomic # 8 Polarization: -37.98 SS G_CDS: -1.79 Total: -39.77 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.03 Total: 16.25 kcal Atomic # 16 Polarization: 29.91 SS G_CDS: -0.61 Total: 29.30 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.41 -8.84 -42.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132339873.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.260 kcal (2) G-P(sol) polarization free energy of solvation -33.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds