Wall clock time and date at job start Wed Apr 1 2020 04:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.58609 * 2 1 4 4 C 1.53192 * 109.58471 * 239.71390 * 2 1 3 5 5 C 1.53040 * 109.31520 * 185.57958 * 4 2 1 6 6 C 1.53042 * 109.53640 * 61.36269 * 5 4 2 7 7 H 1.09004 * 109.49195 * 58.62573 * 6 5 4 8 8 N 1.46507 * 109.49689 * 178.68589 * 6 5 4 9 9 C 1.34771 * 119.99665 * 205.00528 * 8 6 5 10 10 O 1.21284 * 120.00552 * 359.97438 * 9 8 6 11 11 C 1.50701 * 119.99731 * 179.72681 * 9 8 6 12 12 C 1.53003 * 109.47440 * 179.97438 * 11 9 8 13 13 S 1.81400 * 109.47086 * 179.97438 * 12 11 9 14 14 O 1.42096 * 110.54341 * 291.62262 * 13 12 11 15 15 O 1.42104 * 110.54143 * 68.38062 * 13 12 11 16 16 N 1.65600 * 104.44499 * 179.97438 * 13 12 11 17 17 C 1.46508 * 119.99958 * 90.00636 * 16 13 12 18 18 C 1.46498 * 120.00472 * 270.00145 * 16 13 12 19 19 C 1.53191 * 109.31729 * 298.63802 * 6 5 4 20 20 N 1.46926 * 108.77280 * 54.63324 * 19 6 5 21 21 C 1.36939 * 120.63211 * 126.37029 * 20 19 6 22 22 H 1.07994 * 120.00169 * 209.02897 * 21 20 19 23 23 C 1.38811 * 119.99693 * 29.02849 * 21 20 19 24 24 N 1.31622 * 120.00246 * 15.02401 * 23 21 20 25 25 Si 1.86795 * 120.00127 * 195.02513 * 23 21 20 26 26 H 1.48500 * 109.47242 * 359.97438 * 25 23 21 27 27 H 1.48501 * 109.47174 * 120.00053 * 25 23 21 28 28 H 1.48502 * 109.47155 * 239.99877 * 25 23 21 29 29 H 1.08998 * 109.47203 * 180.28375 * 1 2 3 30 30 H 1.09002 * 109.46696 * 300.28258 * 1 2 3 31 31 H 1.09001 * 109.46878 * 60.28505 * 1 2 3 32 32 H 1.09002 * 109.49890 * 65.62881 * 4 2 1 33 33 H 1.09005 * 109.49867 * 305.52981 * 4 2 1 34 34 H 1.09007 * 109.45740 * 301.34852 * 5 4 2 35 35 H 1.08994 * 109.46551 * 181.38841 * 5 4 2 36 36 H 0.97001 * 119.99558 * 24.99913 * 8 6 5 37 37 H 1.09008 * 109.46940 * 299.99687 * 11 9 8 38 38 H 1.08997 * 109.47720 * 59.99408 * 11 9 8 39 39 H 1.08997 * 109.46772 * 300.00332 * 12 11 9 40 40 H 1.09004 * 109.46723 * 59.99581 * 12 11 9 41 41 H 1.09005 * 109.46837 * 359.97438 * 17 16 13 42 42 H 1.08995 * 109.47153 * 119.99485 * 17 16 13 43 43 H 1.09002 * 109.46957 * 239.99811 * 17 16 13 44 44 H 1.08996 * 109.47493 * 89.99632 * 18 16 13 45 45 H 1.09000 * 109.47361 * 210.00360 * 18 16 13 46 46 H 1.09005 * 109.46926 * 330.00167 * 18 16 13 47 47 H 1.08998 * 109.58874 * 174.42148 * 19 6 5 48 48 H 1.08996 * 109.58701 * 294.84985 * 19 6 5 49 49 H 0.96997 * 120.00286 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7279 -1.2463 5 6 3.5674 -0.8467 -1.1713 6 6 3.9568 -1.6659 0.0614 7 1 3.4987 -2.6531 0.0016 8 7 5.4142 -1.8056 0.1152 9 6 5.9675 -2.8493 0.7640 10 8 5.2591 -3.6726 1.3037 11 6 7.4665 -2.9964 0.8142 12 6 7.8294 -4.2544 1.6058 13 16 9.6337 -4.4318 1.6655 14 8 10.1479 -4.7349 0.3759 15 8 10.2097 -3.4049 2.4611 16 7 9.8841 -5.8149 2.5411 17 6 9.9633 -7.1092 1.8593 18 6 10.0266 -5.7442 3.9974 19 6 3.4650 -0.9487 1.3226 20 7 2.0226 -0.7011 1.1936 21 6 1.1536 -1.1162 2.1671 22 1 0.1360 -1.3705 1.9100 23 6 1.5808 -1.2102 3.4845 24 7 2.7038 -0.6323 3.8551 25 14 0.5619 -2.1568 4.7315 26 1 -0.6469 -2.7073 4.0675 27 1 1.3712 -3.2700 5.2893 28 1 0.1510 -1.2451 5.8294 29 1 -0.3633 -1.0276 0.0051 30 1 -0.3633 0.5182 0.8875 31 1 -0.3633 0.5094 -0.8925 32 1 1.7660 -0.1642 -2.1371 33 1 1.6029 -1.7238 -1.2934 34 1 4.0061 0.1486 -1.0992 35 1 3.9377 -1.3423 -2.0686 36 1 5.9808 -1.1470 -0.3162 37 1 7.8575 -3.0795 -0.2000 38 1 7.9013 -2.1233 1.3008 39 1 7.4383 -4.1709 2.6198 40 1 7.3946 -5.1277 1.1195 41 1 9.8350 -6.9633 0.7867 42 1 10.9360 -7.5620 2.0510 43 1 9.1771 -7.7653 2.2330 44 1 9.0465 -5.8440 4.4637 45 1 10.6752 -6.5511 4.3386 46 1 10.4643 -4.7849 4.2735 47 1 3.6518 -1.5746 2.1952 48 1 3.9903 0.0001 1.4317 49 1 3.0025 -0.6983 4.7756 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132505342.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:58:06 Heat of formation + Delta-G solvation = -114.522522 kcal Electronic energy + Delta-G solvation = -29660.696549 eV Core-core repulsion = 25556.494557 eV Total energy + Delta-G solvation = -4104.201992 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.00931 -39.28805 -38.32757 -37.28293 -36.90344 -36.03803 -34.66991 -34.27463 -32.14342 -31.69977 -28.96173 -27.93954 -27.09839 -25.94635 -25.24876 -23.96776 -22.24134 -21.45726 -20.84320 -19.94291 -18.97919 -18.36408 -18.09288 -17.54183 -17.46959 -16.96172 -16.76254 -16.52009 -15.79442 -15.52833 -15.45702 -15.34470 -15.07749 -14.92577 -14.62173 -14.31891 -14.12594 -13.97977 -13.65261 -13.63115 -13.44948 -13.30916 -13.23281 -13.09301 -12.78184 -12.72488 -12.58064 -12.57025 -12.55063 -12.51247 -12.27537 -12.10969 -12.00421 -11.95150 -11.66648 -11.42622 -11.14718 -10.86108 -10.55506 -10.07766 -10.02597 -8.63061 -7.85896 -5.32008 -0.86557 1.39752 1.43119 1.51718 1.56959 1.63004 2.18960 2.49725 2.74750 3.09611 3.29422 3.30575 3.63019 3.77045 3.78650 3.89887 4.00517 4.09454 4.24655 4.34275 4.38527 4.44319 4.52168 4.56953 4.62338 4.70850 4.75595 4.80361 4.81460 4.89135 4.95681 4.97762 5.00174 5.03355 5.07141 5.18587 5.30498 5.34073 5.48561 5.53252 5.53810 5.61310 5.69904 5.80762 6.40664 6.61393 7.15366 7.31841 7.89598 8.38453 9.19262 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013264 B = 0.002806 C = 0.002450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2110.537637 B = 9974.964599 C =11427.055336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.152 3.848 3 H 0.022 0.978 4 C -0.118 4.118 5 C -0.108 4.108 6 C 0.130 3.870 7 H 0.052 0.948 8 N -0.710 5.710 9 C 0.510 3.490 10 O -0.582 6.582 11 C -0.136 4.136 12 C -0.609 4.609 13 S 2.637 3.363 14 O -0.973 6.973 15 O -0.980 6.980 16 N -1.009 6.009 17 C 0.076 3.924 18 C 0.073 3.927 19 C 0.177 3.823 20 N -0.604 5.604 21 C -0.249 4.249 22 H 0.074 0.926 23 C -0.054 4.054 24 N -0.934 5.934 25 Si 0.956 3.044 26 H -0.263 1.263 27 H -0.299 1.299 28 H -0.289 1.289 29 H 0.045 0.955 30 H 0.037 0.963 31 H 0.078 0.922 32 H 0.095 0.905 33 H 0.052 0.948 34 H 0.073 0.927 35 H 0.086 0.914 36 H 0.416 0.584 37 H 0.141 0.859 38 H 0.126 0.874 39 H 0.132 0.868 40 H 0.145 0.855 41 H 0.084 0.916 42 H 0.078 0.922 43 H 0.077 0.923 44 H 0.064 0.936 45 H 0.097 0.903 46 H 0.075 0.925 47 H 0.045 0.955 48 H -0.002 1.002 49 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.145 -8.216 -9.603 18.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.047 3.953 3 H 0.039 0.961 4 C -0.158 4.158 5 C -0.146 4.146 6 C 0.023 3.977 7 H 0.070 0.930 8 N -0.362 5.362 9 C 0.296 3.704 10 O -0.461 6.461 11 C -0.177 4.177 12 C -0.738 4.738 13 S 2.731 3.269 14 O -0.963 6.963 15 O -0.971 6.971 16 N -0.849 5.849 17 C -0.069 4.069 18 C -0.072 4.072 19 C 0.050 3.950 20 N -0.328 5.328 21 C -0.379 4.379 22 H 0.092 0.908 23 C -0.249 4.249 24 N -0.581 5.581 25 Si 0.785 3.215 26 H -0.187 1.187 27 H -0.227 1.227 28 H -0.216 1.216 29 H 0.064 0.936 30 H 0.056 0.944 31 H 0.097 0.903 32 H 0.113 0.887 33 H 0.070 0.930 34 H 0.092 0.908 35 H 0.105 0.895 36 H 0.253 0.747 37 H 0.159 0.841 38 H 0.144 0.856 39 H 0.151 0.849 40 H 0.163 0.837 41 H 0.103 0.897 42 H 0.097 0.903 43 H 0.095 0.905 44 H 0.083 0.917 45 H 0.116 0.884 46 H 0.094 0.906 47 H 0.063 0.937 48 H 0.016 0.984 49 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 14.356 -8.274 -9.431 19.066 hybrid contribution -0.965 -0.328 1.471 1.790 sum 13.391 -8.602 -7.960 17.795 Atomic orbital electron populations 1.21738 0.94819 1.01112 1.01045 1.20810 0.94269 0.93384 0.86814 0.96077 1.21951 0.94716 1.00833 0.98252 1.21654 0.96991 1.00023 0.95936 1.21527 0.79444 0.99110 0.97612 0.93006 1.45919 1.07719 1.27055 1.55486 1.20895 0.91192 0.80891 0.77398 1.90721 1.64895 1.44044 1.46483 1.21512 0.92895 0.98594 1.04733 1.30456 1.26447 1.06533 1.10396 1.04165 0.76827 0.72918 0.73039 1.93555 1.77453 1.83816 1.41509 1.93553 1.75481 1.57876 1.70151 1.57151 1.87549 1.22672 1.17487 1.21810 1.03870 0.83492 0.97731 1.21794 1.03177 1.04671 0.77584 1.20804 0.83685 0.95366 0.95118 1.44338 1.02623 1.65533 1.20309 1.19521 0.95157 1.36468 0.86802 0.90795 1.25782 0.99040 1.01144 0.98917 1.70163 1.25048 1.46458 1.16425 0.85362 0.78626 0.78047 0.79467 1.18742 1.22692 1.21598 0.93585 0.94368 0.90274 0.88660 0.92966 0.90829 0.89515 0.74729 0.84062 0.85600 0.84947 0.83678 0.89739 0.90335 0.90466 0.91717 0.88423 0.90582 0.93685 0.98445 0.94649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.63 7.94 71.98 0.57 -4.06 16 2 C 0.15 5.99 3.50 44.97 0.16 6.15 16 3 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 4 C -0.12 -3.59 5.37 30.67 0.16 -3.43 16 5 C -0.11 -3.08 5.35 30.62 0.16 -2.91 16 6 C 0.13 4.89 2.60 45.07 0.12 5.00 16 7 H 0.05 2.29 7.58 -2.39 -0.02 2.27 16 8 N -0.71 -21.46 5.08 -442.15 -2.25 -23.71 16 9 C 0.51 16.68 7.80 87.66 0.68 17.36 16 10 O -0.58 -25.30 15.64 -3.04 -0.05 -25.35 16 11 C -0.14 -2.96 5.71 29.85 0.17 -2.79 16 12 C -0.61 -12.78 5.47 71.98 0.39 -12.39 16 13 S 2.64 52.90 5.41 -56.49 -0.31 52.60 16 14 O -0.97 -23.05 16.57 -127.65 -2.12 -25.17 16 15 O -0.98 -25.54 16.57 -127.65 -2.12 -27.66 16 16 N -1.01 -16.39 3.52 -562.67 -1.98 -18.36 16 17 C 0.08 0.91 10.62 127.77 1.36 2.27 16 18 C 0.07 1.01 10.68 127.77 1.37 2.37 16 19 C 0.18 8.76 4.86 86.36 0.42 9.18 16 20 N -0.60 -30.35 2.99 -675.24 -2.02 -32.37 16 21 C -0.25 -13.89 8.61 84.03 0.72 -13.16 16 22 H 0.07 3.98 6.20 -2.91 -0.02 3.97 16 23 C -0.05 -3.14 4.96 84.86 0.42 -2.71 16 24 N -0.93 -57.61 11.14 21.65 0.24 -57.37 16 25 Si 0.96 47.19 29.58 68.60 2.03 49.21 16 26 H -0.26 -12.22 7.11 99.48 0.71 -11.51 16 27 H -0.30 -15.14 7.11 99.48 0.71 -14.44 16 28 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 29 H 0.05 1.69 7.40 -2.39 -0.02 1.67 16 30 H 0.04 1.51 7.66 -2.39 -0.02 1.49 16 31 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 32 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 33 H 0.05 1.70 8.14 -2.38 -0.02 1.68 16 34 H 0.07 1.94 8.14 -2.38 -0.02 1.92 16 35 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.42 8.85 8.60 -92.71 -0.80 8.05 16 37 H 0.14 2.03 8.14 -2.38 -0.02 2.01 16 38 H 0.13 2.30 8.14 -2.39 -0.02 2.28 16 39 H 0.13 3.05 8.10 -2.39 -0.02 3.03 16 40 H 0.15 2.82 8.10 -2.39 -0.02 2.80 16 41 H 0.08 1.06 6.87 -2.38 -0.02 1.04 16 42 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 43 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 44 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 45 H 0.10 0.91 8.07 -2.39 -0.02 0.89 16 46 H 0.08 1.22 6.91 -2.38 -0.02 1.20 16 47 H 0.04 2.68 6.06 -2.39 -0.01 2.67 16 48 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 49 H 0.24 14.75 8.31 -92.71 -0.77 13.98 16 Total: -1.00 -84.80 398.87 -1.71 -86.50 By element: Atomic # 1 Polarization: 20.64 SS G_CDS: 0.14 Total: 20.79 kcal Atomic # 6 Polarization: -5.83 SS G_CDS: 6.71 Total: 0.88 kcal Atomic # 7 Polarization: -125.81 SS G_CDS: -6.00 Total: -131.81 kcal Atomic # 8 Polarization: -73.89 SS G_CDS: -4.28 Total: -78.17 kcal Atomic # 14 Polarization: 47.19 SS G_CDS: 2.03 Total: 49.21 kcal Atomic # 16 Polarization: 52.90 SS G_CDS: -0.31 Total: 52.60 kcal Total: -84.80 -1.71 -86.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132505342.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.019 kcal (2) G-P(sol) polarization free energy of solvation -84.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds