Wall clock time and date at job start Wed Apr 1 2020 05:08:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.46221 * 2 1 4 4 C 1.53039 * 109.45764 * 119.97095 * 2 1 3 5 5 C 1.53191 * 109.31416 * 58.63972 * 4 2 1 6 6 N 1.46928 * 108.77343 * 54.63452 * 5 4 2 7 7 C 1.34784 * 120.62829 * 126.41175 * 6 5 4 8 8 O 1.21276 * 119.99470 * 179.97438 * 7 6 5 9 9 C 1.50698 * 119.99966 * 359.97438 * 7 6 5 10 10 N 1.46507 * 109.46991 * 179.97438 * 9 7 6 11 11 C 1.46497 * 119.99945 * 274.99946 * 10 9 7 12 12 S 1.65593 * 119.99777 * 95.00036 * 10 9 7 13 13 C 1.81397 * 104.45255 * 90.00197 * 12 10 9 14 14 O 1.42107 * 104.27553 * 206.07498 * 12 10 9 15 15 O 1.42101 * 104.28201 * 333.92802 * 12 10 9 16 16 C 1.46919 * 118.73982 * 306.39079 * 6 5 4 17 17 C 1.53070 * 109.33608 * 240.10872 * 2 1 3 18 18 H 1.08997 * 109.38860 * 181.25916 * 17 2 1 19 19 C 1.52997 * 109.62317 * 61.15383 * 17 2 1 20 20 N 1.46493 * 109.47466 * 175.10532 * 19 17 2 21 21 C 1.36942 * 120.00327 * 179.97438 * 20 19 17 22 22 H 1.07997 * 119.99623 * 0.02562 * 21 20 19 23 23 C 1.38812 * 119.99882 * 180.02562 * 21 20 19 24 24 N 1.31618 * 120.00403 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 119.99683 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47157 * 0.02562 * 25 23 21 27 27 H 1.48499 * 109.46800 * 119.99956 * 25 23 21 28 28 H 1.48500 * 109.47060 * 240.00009 * 25 23 21 29 29 H 1.09008 * 109.47356 * 300.02917 * 1 2 3 30 30 H 1.08998 * 109.46845 * 60.02730 * 1 2 3 31 31 H 1.08994 * 109.47325 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.49876 * 298.68950 * 4 2 1 33 33 H 1.09001 * 109.49731 * 178.59207 * 4 2 1 34 34 H 1.08998 * 109.58966 * 294.84519 * 5 4 2 35 35 H 1.08999 * 109.58758 * 174.41876 * 5 4 2 36 36 H 1.09000 * 109.47595 * 299.99863 * 9 7 6 37 37 H 1.09005 * 109.47205 * 60.00098 * 9 7 6 38 38 H 1.09006 * 109.46758 * 90.00049 * 11 10 9 39 39 H 1.08993 * 109.47285 * 209.99513 * 11 10 9 40 40 H 1.09005 * 109.47507 * 330.00290 * 11 10 9 41 41 H 1.09000 * 109.46787 * 59.99454 * 13 12 10 42 42 H 1.08992 * 109.47316 * 180.02562 * 13 12 10 43 43 H 1.09004 * 109.47162 * 299.99944 * 13 12 10 44 44 H 1.09002 * 109.58751 * 173.39743 * 16 6 5 45 45 H 1.08996 * 109.58750 * 293.67928 * 16 6 5 46 46 H 1.09004 * 109.47223 * 295.10786 * 19 17 2 47 47 H 1.09000 * 109.47085 * 55.10317 * 19 17 2 48 48 H 0.97004 * 119.99550 * 0.02562 * 20 19 17 49 49 H 0.96996 * 120.00275 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0398 -0.7209 1.2500 5 6 1.4992 -2.1541 1.2643 6 7 1.8619 -2.8089 0.0000 7 6 2.5148 -3.9881 -0.0001 8 8 2.8082 -4.5186 -1.0504 9 6 2.8802 -4.6470 1.3050 10 7 3.5773 -5.9075 1.0373 11 6 2.8101 -7.1318 0.7954 12 16 5.2325 -5.9482 1.0080 13 6 5.7067 -6.3128 2.7205 14 8 5.5412 -7.0463 0.1605 15 8 5.6096 -4.6237 0.6575 16 6 1.4990 -2.1542 -1.2642 17 6 2.0368 -0.7198 -1.2522 18 1 3.1266 -0.7399 -1.2419 19 6 1.5509 0.0182 -2.5012 20 7 2.1328 -0.6035 -3.6932 21 6 1.8382 -0.1097 -4.9361 22 1 1.1773 0.7384 -5.0374 23 6 2.3892 -0.6993 -6.0656 24 7 3.1943 -1.7332 -5.9421 25 14 1.9880 -0.0252 -7.7609 26 1 1.0669 1.1321 -7.6283 27 1 3.2400 0.4133 -8.4282 28 1 1.3386 -1.0847 -8.5739 29 1 -0.3634 0.5143 0.8898 30 1 -0.3633 0.5134 -0.8902 31 1 -0.3634 -1.0276 0.0005 32 1 1.6959 -0.1935 2.1398 33 1 3.1295 -0.7432 1.2382 34 1 0.4143 -2.1345 1.3675 35 1 1.9378 -2.7018 2.0984 36 1 3.5315 -3.9855 1.8764 37 1 1.9742 -4.8477 1.8769 38 1 2.6071 -7.2286 -0.2712 39 1 3.3842 -7.9936 1.1356 40 1 1.8680 -7.0842 1.3417 41 1 5.2813 -7.2709 3.0191 42 1 6.7932 -6.3582 2.7949 43 1 5.3305 -5.5279 3.3767 44 1 1.9374 -2.7019 -2.0984 45 1 0.4141 -2.1368 -1.3684 46 1 0.4637 -0.0375 -2.5563 47 1 1.8589 1.0625 -2.4490 48 1 2.7261 -1.3655 -3.6022 49 1 3.5789 -2.1454 -6.7314 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132865025.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:09 Heat of formation + Delta-G solvation = -116.175021 kcal Electronic energy + Delta-G solvation = -30417.668050 eV Core-core repulsion = 26313.394399 eV Total energy + Delta-G solvation = -4104.273650 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.45279 -39.41975 -38.22584 -37.03774 -36.69515 -36.62236 -34.87290 -33.48113 -31.62847 -30.31318 -29.94214 -28.59543 -27.25640 -26.17343 -25.19457 -24.86916 -22.55799 -21.22765 -19.89970 -19.40601 -18.91493 -18.71211 -18.31892 -17.45272 -17.25009 -16.83515 -16.63647 -16.28309 -16.07004 -15.67114 -15.55516 -15.17892 -15.06129 -14.63186 -14.54164 -14.28324 -14.07098 -14.00462 -13.85582 -13.74720 -13.73629 -13.28114 -13.16663 -13.07103 -12.92345 -12.89870 -12.63711 -12.59377 -12.49502 -12.40716 -12.10779 -11.97398 -11.92422 -11.91210 -11.68817 -11.36719 -11.21541 -11.08451 -10.96249 -9.94323 -9.51450 -9.04098 -7.96945 -5.28533 -0.76182 1.41658 1.44943 1.55089 1.58778 1.67557 2.09687 2.52835 3.05967 3.12725 3.35729 3.54068 3.63378 3.77940 3.85592 3.88423 4.09059 4.14311 4.18457 4.21098 4.23763 4.34205 4.41294 4.46120 4.57739 4.60273 4.66254 4.76343 4.80618 4.86735 4.88684 4.94233 4.97763 5.03967 5.07639 5.11766 5.23604 5.26854 5.33731 5.43387 5.43999 5.47732 5.61047 5.65537 6.22862 6.52365 7.27451 7.27736 8.04595 8.26917 9.26901 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011044 B = 0.003263 C = 0.002707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2534.747173 B = 8578.241493 C =10342.629059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.080 4.080 3 H 0.075 0.925 4 C -0.126 4.126 5 C 0.095 3.905 6 N -0.609 5.609 7 C 0.473 3.527 8 O -0.591 6.591 9 C 0.111 3.889 10 N -0.989 5.989 11 C 0.091 3.909 12 S 2.585 3.415 13 C -0.629 4.629 14 O -1.005 7.005 15 O -1.003 7.003 16 C 0.130 3.870 17 C -0.092 4.092 18 H 0.040 0.960 19 C 0.160 3.840 20 N -0.751 5.751 21 C -0.245 4.245 22 H 0.081 0.919 23 C -0.083 4.083 24 N -0.975 5.975 25 Si 0.980 3.020 26 H -0.259 1.259 27 H -0.293 1.293 28 H -0.294 1.294 29 H 0.084 0.916 30 H 0.043 0.957 31 H 0.058 0.942 32 H 0.117 0.883 33 H 0.055 0.945 34 H 0.097 0.903 35 H 0.123 0.877 36 H 0.139 0.861 37 H 0.165 0.835 38 H 0.019 0.981 39 H 0.093 0.907 40 H 0.109 0.891 41 H 0.159 0.841 42 H 0.144 0.856 43 H 0.163 0.837 44 H 0.037 0.963 45 H 0.074 0.926 46 H 0.032 0.968 47 H 0.022 0.978 48 H 0.368 0.632 49 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.339 -6.634 33.554 34.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.099 4.099 3 H 0.094 0.906 4 C -0.164 4.164 5 C -0.026 4.026 6 N -0.343 5.343 7 C 0.261 3.739 8 O -0.471 6.471 9 C -0.018 4.018 10 N -0.825 5.825 11 C -0.053 4.053 12 S 2.684 3.316 13 C -0.784 4.784 14 O -0.996 6.996 15 O -0.993 6.993 16 C 0.006 3.994 17 C -0.112 4.112 18 H 0.058 0.942 19 C 0.033 3.967 20 N -0.393 5.393 21 C -0.376 4.376 22 H 0.099 0.901 23 C -0.275 4.275 24 N -0.626 5.626 25 Si 0.809 3.191 26 H -0.183 1.183 27 H -0.220 1.220 28 H -0.221 1.221 29 H 0.103 0.897 30 H 0.062 0.938 31 H 0.077 0.923 32 H 0.136 0.864 33 H 0.074 0.926 34 H 0.115 0.885 35 H 0.141 0.859 36 H 0.156 0.844 37 H 0.182 0.818 38 H 0.038 0.962 39 H 0.111 0.889 40 H 0.128 0.872 41 H 0.177 0.823 42 H 0.162 0.838 43 H 0.181 0.819 44 H 0.056 0.944 45 H 0.092 0.908 46 H 0.050 0.950 47 H 0.039 0.961 48 H 0.199 0.801 49 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -3.777 -6.662 32.122 33.023 hybrid contribution 0.409 -0.133 -1.747 1.799 sum -3.368 -6.795 30.375 31.308 Atomic orbital electron populations 1.21947 0.93719 1.02248 1.02481 1.21080 0.97129 0.99131 0.92597 0.90635 1.21981 1.00697 0.95478 0.98261 1.22286 1.02333 0.93693 0.84247 1.48338 1.57038 1.20785 1.08100 1.22449 0.76754 0.81183 0.93502 1.90756 1.55074 1.65066 1.36194 1.21562 1.02784 0.85112 0.92332 1.57034 1.24300 1.14241 1.86907 1.21629 0.98444 0.84431 1.00819 1.05465 0.73179 0.72890 0.80058 1.30232 1.13616 1.15007 1.19572 1.93540 1.83288 1.56466 1.66297 1.93579 1.82026 1.39652 1.84036 1.21266 0.99269 0.92546 0.86291 1.21560 0.98881 0.94626 0.96101 0.94154 1.20875 0.95990 0.94693 0.85100 1.42747 1.56910 1.37429 1.02202 1.19733 1.22337 1.10653 0.84915 0.90070 1.25741 1.00540 0.98964 1.02265 1.69909 1.37440 1.26158 1.29093 0.84971 0.77212 0.77627 0.79313 1.18287 1.22045 1.22079 0.89734 0.93815 0.92306 0.86443 0.92582 0.88518 0.85859 0.84364 0.81761 0.96231 0.88864 0.87245 0.82287 0.83809 0.81859 0.94446 0.90835 0.95009 0.96054 0.80116 0.94193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.79 8.11 71.98 0.58 -2.21 16 2 C -0.08 -1.82 2.71 -10.76 -0.03 -1.85 16 3 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 4 C -0.13 -1.92 5.63 30.67 0.17 -1.74 16 5 C 0.09 1.29 5.87 86.36 0.51 1.80 16 6 N -0.61 -16.73 2.97 -818.92 -2.44 -19.17 16 7 C 0.47 14.82 7.76 87.66 0.68 15.50 16 8 O -0.59 -27.36 15.83 -3.02 -0.05 -27.41 16 9 C 0.11 1.76 4.10 85.63 0.35 2.11 16 10 N -0.99 -18.75 2.61 -543.20 -1.42 -20.17 16 11 C 0.09 1.49 10.22 127.77 1.31 2.80 16 12 S 2.59 56.97 5.96 -56.49 -0.34 56.63 16 13 C -0.63 -3.24 10.99 113.37 1.25 -2.00 16 14 O -1.01 -32.04 17.09 -127.65 -2.18 -34.22 16 15 O -1.00 -32.44 16.99 -127.65 -2.17 -34.61 16 16 C 0.13 4.80 5.04 86.36 0.44 5.24 16 17 C -0.09 -3.26 2.15 -10.71 -0.02 -3.28 16 18 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 19 C 0.16 6.90 5.19 86.38 0.45 7.35 16 20 N -0.75 -42.76 5.38 -343.47 -1.85 -44.60 16 21 C -0.24 -14.85 9.99 84.03 0.84 -14.01 16 22 H 0.08 4.63 7.83 -2.91 -0.02 4.61 16 23 C -0.08 -5.24 5.50 84.86 0.47 -4.77 16 24 N -0.98 -66.73 13.06 21.65 0.28 -66.44 16 25 Si 0.98 49.74 29.55 68.60 2.03 51.77 16 26 H -0.26 -12.04 7.11 99.48 0.71 -11.34 16 27 H -0.29 -14.82 7.11 99.48 0.71 -14.11 16 28 H -0.29 -14.86 7.11 99.48 0.71 -14.15 16 29 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 30 H 0.04 1.00 6.56 -2.39 -0.02 0.99 16 31 H 0.06 1.10 4.98 -2.39 -0.01 1.09 16 32 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.10 0.94 6.69 -2.39 -0.02 0.93 16 35 H 0.12 0.58 5.93 -2.39 -0.01 0.57 16 36 H 0.14 1.34 7.16 -2.39 -0.02 1.32 16 37 H 0.17 0.71 7.76 -2.38 -0.02 0.70 16 38 H 0.02 0.49 8.14 -2.38 -0.02 0.47 16 39 H 0.09 1.05 7.79 -2.39 -0.02 1.03 16 40 H 0.11 0.87 7.94 -2.38 -0.02 0.86 16 41 H 0.16 0.02 8.14 -2.39 -0.02 0.00 16 42 H 0.14 0.53 8.14 -2.39 -0.02 0.51 16 43 H 0.16 -0.14 8.14 -2.39 -0.02 -0.16 16 44 H 0.04 1.87 6.21 -2.39 -0.01 1.85 16 45 H 0.07 2.53 6.70 -2.39 -0.02 2.52 16 46 H 0.03 1.32 6.72 -2.39 -0.02 1.31 16 47 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 48 H 0.37 23.31 6.89 -92.71 -0.64 22.67 16 49 H 0.25 16.49 8.31 -92.71 -0.77 15.72 16 Total: -1.00 -107.93 392.95 -0.82 -108.75 By element: Atomic # 1 Polarization: 24.22 SS G_CDS: 0.32 Total: 24.54 kcal Atomic # 6 Polarization: -2.05 SS G_CDS: 6.99 Total: 4.93 kcal Atomic # 7 Polarization: -144.97 SS G_CDS: -5.42 Total: -150.38 kcal Atomic # 8 Polarization: -91.84 SS G_CDS: -4.40 Total: -96.24 kcal Atomic # 14 Polarization: 49.74 SS G_CDS: 2.03 Total: 51.77 kcal Atomic # 16 Polarization: 56.97 SS G_CDS: -0.34 Total: 56.63 kcal Total: -107.93 -0.82 -108.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132865025.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.427 kcal (2) G-P(sol) polarization free energy of solvation -107.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -108.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds