Wall clock time and date at job start Wed Apr 1 2020 05:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46300 * 2 1 4 4 C 1.53043 * 109.44748 * 119.96831 * 2 1 3 5 5 C 1.53191 * 109.31132 * 181.37889 * 4 2 1 6 6 N 1.46921 * 108.77411 * 305.35957 * 5 4 2 7 7 C 1.34777 * 120.63225 * 233.58641 * 6 5 4 8 8 O 1.21282 * 119.99945 * 180.02562 * 7 6 5 9 9 C 1.50700 * 119.99997 * 0.02846 * 7 6 5 10 10 N 1.46494 * 109.46998 * 179.97438 * 9 7 6 11 11 C 1.46500 * 120.00276 * 274.99639 * 10 9 7 12 12 S 1.65604 * 120.00097 * 94.99886 * 10 9 7 13 13 C 1.81406 * 104.44920 * 89.99800 * 12 10 9 14 14 O 1.42093 * 104.28237 * 206.06894 * 12 10 9 15 15 O 1.42104 * 104.27568 * 333.92857 * 12 10 9 16 16 C 1.46925 * 118.73795 * 53.61317 * 6 5 4 17 17 C 1.53046 * 109.46008 * 240.02476 * 2 1 3 18 18 H 1.08995 * 109.49919 * 298.61631 * 17 2 1 19 19 C 1.53006 * 109.49435 * 58.68107 * 17 2 1 20 20 N 1.46495 * 109.46960 * 185.00197 * 19 17 2 21 21 C 1.36936 * 119.99962 * 180.02562 * 20 19 17 22 22 H 1.07996 * 120.00154 * 359.97438 * 21 20 19 23 23 C 1.38815 * 120.00066 * 179.97438 * 21 20 19 24 24 N 1.31627 * 119.99844 * 359.97438 * 23 21 20 25 25 Si 1.86791 * 120.00115 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47266 * 0.02562 * 25 23 21 27 27 H 1.48498 * 109.47348 * 120.00017 * 25 23 21 28 28 H 1.48505 * 109.47320 * 239.99971 * 25 23 21 29 29 H 1.08992 * 109.47480 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47171 * 300.00294 * 1 2 3 31 31 H 1.09008 * 109.46811 * 59.99958 * 1 2 3 32 32 H 1.09004 * 109.49679 * 301.32867 * 4 2 1 33 33 H 1.08994 * 109.49744 * 61.42383 * 4 2 1 34 34 H 1.09002 * 109.58035 * 185.57574 * 5 4 2 35 35 H 1.09001 * 109.70369 * 65.22144 * 5 4 2 36 36 H 1.08997 * 109.46971 * 299.99626 * 9 7 6 37 37 H 1.08999 * 109.47199 * 59.99382 * 9 7 6 38 38 H 1.09003 * 109.46587 * 89.99967 * 11 10 9 39 39 H 1.08998 * 109.47433 * 209.99876 * 11 10 9 40 40 H 1.09001 * 109.47135 * 330.00612 * 11 10 9 41 41 H 1.08995 * 109.46896 * 59.99796 * 13 12 10 42 42 H 1.09001 * 109.47044 * 180.02562 * 13 12 10 43 43 H 1.08999 * 109.46833 * 300.00324 * 13 12 10 44 44 H 1.09003 * 109.59222 * 186.59958 * 16 6 5 45 45 H 1.09006 * 109.70276 * 66.24587 * 16 6 5 46 46 H 1.09001 * 109.46991 * 304.99842 * 19 17 2 47 47 H 1.09000 * 109.47170 * 64.99839 * 19 17 2 48 48 H 0.97002 * 120.00280 * 359.97438 * 20 19 17 49 49 H 0.96999 * 119.99556 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0396 -0.7209 1.2502 5 6 3.5711 -0.6890 1.2645 6 7 4.0675 -1.2494 0.0004 7 6 4.9616 -2.2580 0.0005 8 8 5.3641 -2.7117 -1.0497 9 6 5.4610 -2.8220 1.3057 10 7 6.4160 -3.9002 1.0382 11 6 5.9341 -5.2622 0.7956 12 16 8.0404 -3.5794 1.0099 13 6 8.5816 -3.8326 2.7227 14 8 8.5813 -4.5836 0.1625 15 8 8.1200 -2.2045 0.6598 16 6 3.5714 -0.6891 -1.2639 17 6 2.0399 -0.7210 -1.2500 18 1 1.6971 -1.7556 -1.2385 19 6 1.5031 -0.0189 -2.4990 20 7 1.8919 -0.7773 -3.6906 21 6 1.5215 -0.3373 -4.9333 22 1 0.9424 0.5685 -5.0350 23 6 1.8904 -1.0557 -6.0624 24 7 2.5967 -2.1595 -5.9385 25 14 1.3846 -0.4559 -7.7575 26 1 0.6025 0.7996 -7.6254 27 1 2.5979 -0.1989 -8.5742 28 1 0.5516 -1.4911 -8.4208 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8901 32 1 1.6569 -0.2207 2.1399 33 1 1.6973 -1.7556 1.2384 34 1 3.9411 -1.2850 2.0988 35 1 3.9163 0.3396 1.3688 36 1 5.9522 -2.0347 1.8775 37 1 4.6202 -3.2153 1.8771 38 1 5.7576 -5.4006 -0.2711 39 1 6.6820 -5.9783 1.1361 40 1 5.0039 -5.4211 1.3413 41 1 8.3749 -4.8603 3.0209 42 1 9.6519 -3.6403 2.7978 43 1 8.0431 -3.1486 3.3787 44 1 3.9416 -1.2851 -2.0981 45 1 3.9145 0.3401 -1.3695 46 1 0.4160 0.0393 -2.4442 47 1 1.9184 0.9872 -2.5571 48 1 2.4124 -1.5908 -3.5993 49 1 2.8541 -2.6616 -6.7275 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132865026.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:13 Heat of formation + Delta-G solvation = -83.987922 kcal Electronic energy + Delta-G solvation = -30160.376803 eV Core-core repulsion = 26057.498890 eV Total energy + Delta-G solvation = -4102.877913 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -40.22465 -38.13814 -37.30167 -36.13345 -35.83604 -34.94148 -33.64781 -31.85787 -29.99145 -29.84472 -29.26614 -27.82067 -25.89406 -24.88268 -23.25277 -23.07834 -21.20001 -20.13088 -19.35770 -18.76930 -17.90238 -17.40470 -16.94028 -16.61954 -16.33268 -15.63840 -15.27585 -14.81834 -14.66615 -14.33264 -14.20086 -14.01261 -13.80129 -13.56926 -13.49651 -13.39905 -13.23453 -13.01577 -12.94794 -12.57029 -12.51189 -12.32206 -12.22001 -11.89409 -11.88259 -11.72648 -11.67759 -11.48031 -11.25662 -10.96392 -10.85044 -10.76598 -10.56369 -10.25590 -10.12215 -10.10472 -9.85534 -9.55027 -9.04152 -8.79271 -8.42036 -6.81907 -5.65699 -2.95336 -0.05137 2.31438 2.77547 3.10888 3.49980 3.54635 3.57730 3.72790 3.83487 4.21719 4.43745 4.49348 4.54386 4.63272 4.68707 4.82619 4.85847 4.91494 5.01497 5.18507 5.21254 5.28506 5.31220 5.35214 5.58218 5.65276 5.68583 5.70537 5.74071 5.82743 5.83525 5.91446 5.99305 6.04818 6.12622 6.22630 6.28836 6.35731 6.48634 6.63342 6.71555 6.85813 6.94575 7.56422 7.78591 8.37108 8.51937 9.62873 10.21418 10.55299 11.56611 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011244 B = 0.003090 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2489.636433 B = 9060.580753 C =10943.394542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.085 4.085 3 H 0.071 0.929 4 C -0.128 4.128 5 C 0.106 3.894 6 N -0.612 5.612 7 C 0.493 3.507 8 O -0.514 6.514 9 C 0.109 3.891 10 N -0.986 5.986 11 C 0.095 3.905 12 S 2.609 3.391 13 C -0.677 4.677 14 O -0.945 6.945 15 O -0.945 6.945 16 C 0.120 3.880 17 C -0.101 4.101 18 H 0.073 0.927 19 C 0.159 3.841 20 N -0.733 5.733 21 C -0.241 4.241 22 H 0.070 0.930 23 C -0.014 4.014 24 N -0.928 5.928 25 Si 0.905 3.095 26 H -0.281 1.281 27 H -0.292 1.292 28 H -0.292 1.292 29 H 0.053 0.947 30 H 0.048 0.952 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.078 0.922 35 H 0.070 0.930 36 H 0.107 0.893 37 H 0.108 0.892 38 H 0.069 0.931 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.127 0.873 42 H 0.127 0.873 43 H 0.126 0.874 44 H 0.103 0.897 45 H 0.065 0.935 46 H 0.026 0.974 47 H 0.018 0.982 48 H 0.385 0.615 49 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.560 -2.062 28.141 28.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.104 4.104 3 H 0.089 0.911 4 C -0.167 4.167 5 C -0.018 4.018 6 N -0.347 5.347 7 C 0.278 3.722 8 O -0.388 6.388 9 C -0.021 4.021 10 N -0.822 5.822 11 C -0.050 4.050 12 S 2.700 3.300 13 C -0.826 4.826 14 O -0.935 6.935 15 O -0.935 6.935 16 C -0.002 4.002 17 C -0.120 4.120 18 H 0.091 0.909 19 C 0.031 3.969 20 N -0.378 5.378 21 C -0.372 4.372 22 H 0.088 0.912 23 C -0.210 4.210 24 N -0.577 5.577 25 Si 0.737 3.263 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.220 1.220 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.084 0.916 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.096 0.904 35 H 0.089 0.911 36 H 0.125 0.875 37 H 0.126 0.874 38 H 0.088 0.912 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.146 0.854 42 H 0.146 0.854 43 H 0.145 0.855 44 H 0.122 0.878 45 H 0.083 0.917 46 H 0.044 0.956 47 H 0.036 0.964 48 H 0.219 0.781 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 6.222 -2.002 26.691 27.480 hybrid contribution -0.319 -0.076 -0.187 0.377 sum 5.904 -2.077 26.505 27.234 Atomic orbital electron populations 1.21878 0.94997 1.01911 1.01687 1.21092 0.95915 0.99421 0.93958 0.91050 1.21985 0.94565 1.01607 0.98509 1.21747 0.94838 0.99439 0.85747 1.48181 1.43374 1.35463 1.07684 1.21017 0.79424 0.79895 0.91907 1.90783 1.56288 1.58770 1.32927 1.21173 0.94866 0.90396 0.95673 1.57142 1.23479 1.14913 1.86688 1.21517 1.00229 0.79949 1.03290 1.05145 0.73049 0.74602 0.77183 1.30634 1.12694 1.11817 1.27423 1.93621 1.77363 1.60617 1.61944 1.93639 1.84946 1.33551 1.81355 1.21716 0.93468 0.99205 0.85797 1.21711 0.94595 1.00641 0.95099 0.90850 1.20721 0.96753 0.94046 0.85416 1.42428 1.65440 1.29085 1.00829 1.19232 1.27889 1.06267 0.83798 0.91236 1.24762 1.00863 0.97556 0.97798 1.69691 1.42390 1.17222 1.28371 0.86143 0.77607 0.77658 0.84920 1.20639 1.21897 1.21958 0.92817 0.93273 0.91637 0.90874 0.91467 0.90400 0.91132 0.87481 0.87380 0.91249 0.91018 0.91068 0.85424 0.85428 0.85482 0.87841 0.91665 0.95594 0.96449 0.78114 0.93551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 8.82 37.16 0.33 -1.34 16 2 C -0.08 -1.00 2.23 -90.57 -0.20 -1.20 16 3 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 4 C -0.13 -1.14 5.36 -26.61 -0.14 -1.28 16 5 C 0.11 0.94 6.34 -3.71 -0.02 0.91 16 6 N -0.61 -8.49 2.97 -172.77 -0.51 -9.00 16 7 C 0.49 7.52 7.76 -10.98 -0.09 7.43 16 8 O -0.51 -10.72 15.83 5.56 0.09 -10.63 16 9 C 0.11 1.01 4.11 -5.20 -0.02 0.99 16 10 N -0.99 -9.86 2.61 -123.06 -0.32 -10.18 16 11 C 0.10 0.85 10.22 59.85 0.61 1.46 16 12 S 2.61 27.54 5.96 -107.50 -0.64 26.90 16 13 C -0.68 -3.14 10.99 101.05 1.11 -2.03 16 14 O -0.95 -13.64 17.09 -57.54 -0.98 -14.62 16 15 O -0.94 -13.67 16.99 -57.54 -0.98 -14.65 16 16 C 0.12 2.08 5.52 -3.71 -0.02 2.06 16 17 C -0.10 -1.64 1.92 -90.50 -0.17 -1.81 16 18 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 19 C 0.16 3.21 5.41 -4.04 -0.02 3.18 16 20 N -0.73 -19.23 5.38 -59.91 -0.32 -19.56 16 21 C -0.24 -6.96 9.99 -15.06 -0.15 -7.11 16 22 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 23 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 24 N -0.93 -29.53 13.06 55.49 0.72 -28.80 16 25 Si 0.91 23.25 29.55 -169.99 -5.02 18.23 16 26 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 27 H -0.29 -7.56 7.11 56.52 0.40 -7.15 16 28 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.83 6.29 -51.92 -0.33 0.51 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.08 0.43 5.93 -51.93 -0.31 0.12 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.11 0.70 7.41 -51.93 -0.38 0.32 16 37 H 0.11 0.60 7.51 -51.93 -0.39 0.21 16 38 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.07 0.47 7.79 -51.93 -0.40 0.06 16 40 H 0.07 0.44 7.94 -51.93 -0.41 0.03 16 41 H 0.13 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.13 0.48 8.14 -51.92 -0.42 0.05 16 43 H 0.13 0.34 8.14 -51.92 -0.42 -0.08 16 44 H 0.10 2.28 6.22 -51.93 -0.32 1.96 16 45 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 46 H 0.03 0.52 6.14 -51.93 -0.32 0.21 16 47 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 48 H 0.38 10.86 6.90 -40.82 -0.28 10.58 16 49 H 0.25 7.83 8.31 -40.82 -0.34 7.49 16 LS Contribution 399.05 15.07 6.01 6.01 Total: -1.00 -41.42 399.05 -9.03 -50.45 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -8.19 Total: 5.11 kcal Atomic # 6 Polarization: -0.37 SS G_CDS: 1.11 Total: 0.75 kcal Atomic # 7 Polarization: -67.11 SS G_CDS: -0.43 Total: -67.54 kcal Atomic # 8 Polarization: -38.03 SS G_CDS: -1.87 Total: -39.91 kcal Atomic # 14 Polarization: 23.25 SS G_CDS: -5.02 Total: 18.23 kcal Atomic # 16 Polarization: 27.54 SS G_CDS: -0.64 Total: 26.90 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -41.42 -9.03 -50.45 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132865026.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.539 kcal (2) G-P(sol) polarization free energy of solvation -41.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds