Wall clock time and date at job start Wed Apr 1 2020 05:08:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46300 * 2 1 4 4 C 1.53043 * 109.44748 * 119.96831 * 2 1 3 5 5 C 1.53191 * 109.31132 * 181.37889 * 4 2 1 6 6 N 1.46921 * 108.77411 * 305.35957 * 5 4 2 7 7 C 1.34777 * 120.63225 * 233.58641 * 6 5 4 8 8 O 1.21282 * 119.99945 * 180.02562 * 7 6 5 9 9 C 1.50700 * 119.99997 * 0.02846 * 7 6 5 10 10 N 1.46494 * 109.46998 * 179.97438 * 9 7 6 11 11 C 1.46500 * 120.00276 * 274.99639 * 10 9 7 12 12 S 1.65604 * 120.00097 * 94.99886 * 10 9 7 13 13 C 1.81406 * 104.44920 * 89.99800 * 12 10 9 14 14 O 1.42093 * 104.28237 * 206.06894 * 12 10 9 15 15 O 1.42104 * 104.27568 * 333.92857 * 12 10 9 16 16 C 1.46925 * 118.73795 * 53.61317 * 6 5 4 17 17 C 1.53046 * 109.46008 * 240.02476 * 2 1 3 18 18 H 1.08995 * 109.49919 * 298.61631 * 17 2 1 19 19 C 1.53006 * 109.49435 * 58.68107 * 17 2 1 20 20 N 1.46495 * 109.46960 * 185.00197 * 19 17 2 21 21 C 1.36936 * 119.99962 * 180.02562 * 20 19 17 22 22 H 1.07996 * 120.00154 * 359.97438 * 21 20 19 23 23 C 1.38815 * 120.00066 * 179.97438 * 21 20 19 24 24 N 1.31627 * 119.99844 * 359.97438 * 23 21 20 25 25 Si 1.86791 * 120.00115 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47266 * 0.02562 * 25 23 21 27 27 H 1.48498 * 109.47348 * 120.00017 * 25 23 21 28 28 H 1.48505 * 109.47320 * 239.99971 * 25 23 21 29 29 H 1.08992 * 109.47480 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47171 * 300.00294 * 1 2 3 31 31 H 1.09008 * 109.46811 * 59.99958 * 1 2 3 32 32 H 1.09004 * 109.49679 * 301.32867 * 4 2 1 33 33 H 1.08994 * 109.49744 * 61.42383 * 4 2 1 34 34 H 1.09002 * 109.58035 * 185.57574 * 5 4 2 35 35 H 1.09001 * 109.70369 * 65.22144 * 5 4 2 36 36 H 1.08997 * 109.46971 * 299.99626 * 9 7 6 37 37 H 1.08999 * 109.47199 * 59.99382 * 9 7 6 38 38 H 1.09003 * 109.46587 * 89.99967 * 11 10 9 39 39 H 1.08998 * 109.47433 * 209.99876 * 11 10 9 40 40 H 1.09001 * 109.47135 * 330.00612 * 11 10 9 41 41 H 1.08995 * 109.46896 * 59.99796 * 13 12 10 42 42 H 1.09001 * 109.47044 * 180.02562 * 13 12 10 43 43 H 1.08999 * 109.46833 * 300.00324 * 13 12 10 44 44 H 1.09003 * 109.59222 * 186.59958 * 16 6 5 45 45 H 1.09006 * 109.70276 * 66.24587 * 16 6 5 46 46 H 1.09001 * 109.46991 * 304.99842 * 19 17 2 47 47 H 1.09000 * 109.47170 * 64.99839 * 19 17 2 48 48 H 0.97002 * 120.00280 * 359.97438 * 20 19 17 49 49 H 0.96999 * 119.99556 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0396 -0.7209 1.2502 5 6 3.5711 -0.6890 1.2645 6 7 4.0675 -1.2494 0.0004 7 6 4.9616 -2.2580 0.0005 8 8 5.3641 -2.7117 -1.0497 9 6 5.4610 -2.8220 1.3057 10 7 6.4160 -3.9002 1.0382 11 6 5.9341 -5.2622 0.7956 12 16 8.0404 -3.5794 1.0099 13 6 8.5816 -3.8326 2.7227 14 8 8.5813 -4.5836 0.1625 15 8 8.1200 -2.2045 0.6598 16 6 3.5714 -0.6891 -1.2639 17 6 2.0399 -0.7210 -1.2500 18 1 1.6971 -1.7556 -1.2385 19 6 1.5031 -0.0189 -2.4990 20 7 1.8919 -0.7773 -3.6906 21 6 1.5215 -0.3373 -4.9333 22 1 0.9424 0.5685 -5.0350 23 6 1.8904 -1.0557 -6.0624 24 7 2.5967 -2.1595 -5.9385 25 14 1.3846 -0.4559 -7.7575 26 1 0.6025 0.7996 -7.6254 27 1 2.5979 -0.1989 -8.5742 28 1 0.5516 -1.4911 -8.4208 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8901 32 1 1.6569 -0.2207 2.1399 33 1 1.6973 -1.7556 1.2384 34 1 3.9411 -1.2850 2.0988 35 1 3.9163 0.3396 1.3688 36 1 5.9522 -2.0347 1.8775 37 1 4.6202 -3.2153 1.8771 38 1 5.7576 -5.4006 -0.2711 39 1 6.6820 -5.9783 1.1361 40 1 5.0039 -5.4211 1.3413 41 1 8.3749 -4.8603 3.0209 42 1 9.6519 -3.6403 2.7978 43 1 8.0431 -3.1486 3.3787 44 1 3.9416 -1.2851 -2.0981 45 1 3.9145 0.3401 -1.3695 46 1 0.4160 0.0393 -2.4442 47 1 1.9184 0.9872 -2.5571 48 1 2.4124 -1.5908 -3.5993 49 1 2.8541 -2.6616 -6.7275 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132865026.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:12 Heat of formation + Delta-G solvation = -118.919968 kcal Electronic energy + Delta-G solvation = -30161.891570 eV Core-core repulsion = 26057.498890 eV Total energy + Delta-G solvation = -4104.392680 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.33959 -39.30052 -38.21800 -37.03618 -36.70527 -36.59564 -35.05466 -33.51328 -31.61867 -30.31292 -30.14895 -28.86508 -27.30574 -25.98287 -24.89671 -24.15088 -22.55720 -21.32245 -20.37495 -19.65218 -19.16636 -18.69329 -18.28033 -17.50236 -17.21097 -16.76695 -16.68869 -16.33543 -15.65788 -15.56736 -15.37742 -15.21152 -15.08717 -14.57957 -14.39483 -14.25345 -14.12428 -13.99265 -13.94807 -13.79035 -13.73137 -13.28680 -13.16291 -13.08135 -13.05494 -12.81336 -12.66228 -12.62399 -12.52953 -12.50345 -12.14050 -11.97020 -11.91883 -11.90564 -11.74495 -11.33950 -11.18610 -11.05632 -10.94263 -9.94990 -9.58263 -9.02321 -7.96946 -5.27559 -0.75420 1.41975 1.44936 1.54905 1.58470 1.68160 2.07651 2.53049 3.05922 3.13117 3.35984 3.53974 3.64168 3.74660 3.85576 3.89891 4.10089 4.11696 4.18727 4.20903 4.24294 4.32221 4.39439 4.48907 4.61306 4.64687 4.65694 4.77159 4.83574 4.85777 4.90715 4.98154 4.99007 5.02491 5.07101 5.12311 5.16641 5.26475 5.30667 5.42948 5.46342 5.49342 5.61383 5.62353 6.23548 6.51557 7.26940 7.28514 8.06010 8.27701 9.26805 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011244 B = 0.003090 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2489.636433 B = 9060.580753 C =10943.394542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.080 4.080 3 H 0.080 0.920 4 C -0.121 4.121 5 C 0.095 3.905 6 N -0.610 5.610 7 C 0.473 3.527 8 O -0.591 6.591 9 C 0.111 3.889 10 N -0.989 5.989 11 C 0.091 3.909 12 S 2.588 3.412 13 C -0.629 4.629 14 O -1.006 7.006 15 O -1.000 7.000 16 C 0.126 3.874 17 C -0.085 4.085 18 H 0.051 0.949 19 C 0.155 3.845 20 N -0.749 5.749 21 C -0.244 4.244 22 H 0.080 0.920 23 C -0.083 4.083 24 N -0.973 5.973 25 Si 0.978 3.022 26 H -0.260 1.260 27 H -0.296 1.296 28 H -0.291 1.291 29 H 0.047 0.953 30 H 0.081 0.919 31 H 0.044 0.956 32 H 0.115 0.885 33 H 0.065 0.935 34 H 0.127 0.873 35 H 0.085 0.915 36 H 0.144 0.856 37 H 0.160 0.840 38 H 0.017 0.983 39 H 0.095 0.905 40 H 0.106 0.894 41 H 0.157 0.843 42 H 0.145 0.855 43 H 0.163 0.837 44 H 0.041 0.959 45 H 0.061 0.939 46 H 0.035 0.965 47 H 0.019 0.981 48 H 0.369 0.631 49 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.562 -0.971 33.618 33.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.099 4.099 3 H 0.098 0.902 4 C -0.159 4.159 5 C -0.026 4.026 6 N -0.344 5.344 7 C 0.261 3.739 8 O -0.471 6.471 9 C -0.018 4.018 10 N -0.825 5.825 11 C -0.053 4.053 12 S 2.687 3.313 13 C -0.785 4.785 14 O -0.996 6.996 15 O -0.990 6.990 16 C 0.002 3.998 17 C -0.104 4.104 18 H 0.069 0.931 19 C 0.029 3.971 20 N -0.392 5.392 21 C -0.375 4.375 22 H 0.098 0.902 23 C -0.275 4.275 24 N -0.624 5.624 25 Si 0.807 3.193 26 H -0.184 1.184 27 H -0.223 1.223 28 H -0.218 1.218 29 H 0.066 0.934 30 H 0.100 0.900 31 H 0.063 0.937 32 H 0.133 0.867 33 H 0.084 0.916 34 H 0.145 0.855 35 H 0.103 0.897 36 H 0.161 0.839 37 H 0.178 0.822 38 H 0.036 0.964 39 H 0.113 0.887 40 H 0.124 0.876 41 H 0.175 0.825 42 H 0.163 0.837 43 H 0.182 0.818 44 H 0.059 0.941 45 H 0.079 0.921 46 H 0.053 0.947 47 H 0.037 0.963 48 H 0.200 0.800 49 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 5.158 -0.838 32.187 32.609 hybrid contribution 0.002 -0.365 -1.776 1.813 sum 5.160 -1.204 30.412 30.870 Atomic orbital electron populations 1.21848 0.94323 1.01714 1.02272 1.21112 0.96393 0.99561 0.92872 0.90211 1.21987 0.94332 1.01538 0.98014 1.22258 0.94989 1.01047 0.84283 1.48345 1.42862 1.35049 1.08097 1.22456 0.78561 0.79313 0.93528 1.90758 1.58917 1.61206 1.36206 1.21556 0.96695 0.91255 0.92299 1.57044 1.23337 1.15220 1.86885 1.21610 1.02734 0.80301 1.00704 1.05395 0.73140 0.72753 0.80008 1.30235 1.13833 1.14768 1.19630 1.93542 1.78324 1.61417 1.66318 1.93564 1.85553 1.35888 1.84039 1.21291 0.94246 0.97771 0.86486 1.21543 0.93560 0.99526 0.95821 0.93064 1.20950 0.97186 0.93731 0.85233 1.42715 1.65225 1.29069 1.02156 1.19714 1.26727 1.06084 0.85016 0.90231 1.25705 1.01627 0.98002 1.02118 1.69896 1.44504 1.18985 1.29054 0.84999 0.77039 0.77776 0.79495 1.18432 1.22328 1.21839 0.93414 0.89997 0.93705 0.86658 0.91632 0.85545 0.89655 0.83860 0.82231 0.96413 0.88698 0.87584 0.82481 0.83688 0.81843 0.94056 0.92051 0.94725 0.96332 0.79985 0.94204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.92 8.82 71.98 0.63 -2.29 16 2 C -0.08 -1.73 2.23 -10.76 -0.02 -1.75 16 3 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 4 C -0.12 -1.61 5.36 30.67 0.16 -1.44 16 5 C 0.09 1.29 6.34 86.36 0.55 1.84 16 6 N -0.61 -16.84 2.97 -818.91 -2.43 -19.27 16 7 C 0.47 14.84 7.76 87.66 0.68 15.52 16 8 O -0.59 -27.35 15.83 -3.03 -0.05 -27.40 16 9 C 0.11 1.75 4.11 85.63 0.35 2.10 16 10 N -0.99 -18.70 2.61 -543.24 -1.42 -20.11 16 11 C 0.09 1.60 10.22 127.77 1.31 2.90 16 12 S 2.59 53.65 5.96 -56.49 -0.34 53.31 16 13 C -0.63 -2.64 10.99 113.37 1.25 -1.39 16 14 O -1.01 -30.96 17.09 -127.65 -2.18 -33.15 16 15 O -1.00 -29.82 16.99 -127.65 -2.17 -31.99 16 16 C 0.13 4.69 5.52 86.36 0.48 5.16 16 17 C -0.08 -2.85 1.92 -10.71 -0.02 -2.87 16 18 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 19 C 0.16 6.55 5.41 86.38 0.47 7.02 16 20 N -0.75 -41.78 5.38 -343.45 -1.85 -43.62 16 21 C -0.24 -14.61 9.99 84.03 0.84 -13.77 16 22 H 0.08 4.51 7.83 -2.91 -0.02 4.49 16 23 C -0.08 -5.14 5.50 84.86 0.47 -4.67 16 24 N -0.97 -65.53 13.06 21.65 0.28 -65.25 16 25 Si 0.98 49.39 29.55 68.60 2.03 51.42 16 26 H -0.26 -12.10 7.11 99.48 0.71 -11.39 16 27 H -0.30 -15.03 7.11 99.48 0.71 -14.32 16 28 H -0.29 -14.55 7.11 99.48 0.71 -13.84 16 29 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.04 1.08 6.29 -2.38 -0.01 1.07 16 32 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.13 0.54 5.93 -2.39 -0.01 0.52 16 35 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.14 1.22 7.41 -2.39 -0.02 1.20 16 37 H 0.16 0.86 7.51 -2.39 -0.02 0.84 16 38 H 0.02 0.47 8.14 -2.39 -0.02 0.45 16 39 H 0.09 1.15 7.79 -2.39 -0.02 1.13 16 40 H 0.11 1.05 7.94 -2.39 -0.02 1.03 16 41 H 0.16 -0.05 8.14 -2.39 -0.02 -0.07 16 42 H 0.14 0.35 8.14 -2.39 -0.02 0.33 16 43 H 0.16 -0.30 8.14 -2.39 -0.02 -0.32 16 44 H 0.04 2.05 6.22 -2.39 -0.01 2.04 16 45 H 0.06 2.25 8.14 -2.38 -0.02 2.23 16 46 H 0.03 1.42 6.14 -2.39 -0.01 1.41 16 47 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 48 H 0.37 22.70 6.90 -92.71 -0.64 22.06 16 49 H 0.25 16.23 8.31 -92.71 -0.77 15.46 16 Total: -1.00 -105.70 399.05 -0.68 -106.38 By element: Atomic # 1 Polarization: 23.04 SS G_CDS: 0.30 Total: 23.34 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: 7.14 Total: 6.35 kcal Atomic # 7 Polarization: -142.85 SS G_CDS: -5.41 Total: -148.26 kcal Atomic # 8 Polarization: -88.14 SS G_CDS: -4.40 Total: -92.53 kcal Atomic # 14 Polarization: 49.39 SS G_CDS: 2.03 Total: 51.42 kcal Atomic # 16 Polarization: 53.65 SS G_CDS: -0.34 Total: 53.31 kcal Total: -105.70 -0.68 -106.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132865026.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.541 kcal (2) G-P(sol) polarization free energy of solvation -105.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -106.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds