Wall clock time and date at job start Wed Apr 1 2020 05:08:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.44935 * 2 1 4 4 C 1.53039 * 109.46411 * 240.02917 * 2 1 3 5 5 C 1.53194 * 109.31541 * 178.61341 * 4 2 1 6 6 N 1.46931 * 108.77143 * 54.64061 * 5 4 2 7 7 C 1.34765 * 120.62732 * 126.36857 * 6 5 4 8 8 O 1.21286 * 119.99671 * 180.02562 * 7 6 5 9 9 C 1.50703 * 120.00650 * 359.97438 * 7 6 5 10 10 N 1.46496 * 109.47501 * 180.02562 * 9 7 6 11 11 C 1.46501 * 119.99919 * 275.00087 * 10 9 7 12 12 S 1.65600 * 120.00029 * 94.99693 * 10 9 7 13 13 C 1.81404 * 104.45074 * 270.00042 * 12 10 9 14 14 O 1.42107 * 104.27629 * 153.93080 * 12 10 9 15 15 O 1.42102 * 104.27841 * 26.07217 * 12 10 9 16 16 C 1.46925 * 118.73665 * 306.64016 * 6 5 4 17 17 C 1.52764 * 109.01013 * 53.31312 * 16 6 5 18 18 H 1.09000 * 109.38588 * 65.50981 * 17 16 6 19 19 C 1.52998 * 109.56634 * 185.55368 * 17 16 6 20 20 N 1.46503 * 109.46623 * 294.96509 * 19 17 16 21 21 C 1.36937 * 119.99699 * 180.02562 * 20 19 17 22 22 H 1.08000 * 120.00138 * 0.02562 * 21 20 19 23 23 C 1.38809 * 119.99932 * 179.97438 * 21 20 19 24 24 N 1.31622 * 120.00159 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 120.00068 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.46905 * 359.97438 * 25 23 21 27 27 H 1.48494 * 109.47261 * 120.00311 * 25 23 21 28 28 H 1.48505 * 109.47166 * 240.00323 * 25 23 21 29 29 H 1.08998 * 109.46958 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47142 * 299.96899 * 1 2 3 31 31 H 1.09002 * 109.46483 * 59.96700 * 1 2 3 32 32 H 1.09004 * 109.49405 * 58.66662 * 4 2 1 33 33 H 1.08994 * 109.50116 * 298.57589 * 4 2 1 34 34 H 1.09001 * 109.58498 * 294.85342 * 5 4 2 35 35 H 1.08998 * 109.58315 * 174.42294 * 5 4 2 36 36 H 1.08995 * 109.46641 * 59.99684 * 9 7 6 37 37 H 1.08999 * 109.46849 * 299.99957 * 9 7 6 38 38 H 1.09003 * 109.46906 * 269.99787 * 11 10 9 39 39 H 1.08997 * 109.47334 * 29.99690 * 11 10 9 40 40 H 1.09000 * 109.47460 * 149.99847 * 11 10 9 41 41 H 1.09002 * 109.47124 * 60.00022 * 13 12 10 42 42 H 1.09001 * 109.46975 * 300.00144 * 13 12 10 43 43 H 1.09004 * 109.47147 * 180.02562 * 13 12 10 44 44 H 1.08998 * 109.58688 * 173.14704 * 16 6 5 45 45 H 1.08996 * 109.58870 * 293.57450 * 16 6 5 46 46 H 1.09004 * 109.47300 * 54.96199 * 19 17 16 47 47 H 1.09003 * 109.47137 * 174.96803 * 19 17 16 48 48 H 0.97000 * 120.00074 * 359.97438 * 20 19 17 49 49 H 0.96998 * 120.00071 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0400 -0.7208 -1.2500 5 6 3.5715 -0.6886 -1.2641 6 7 4.0679 -1.2489 0.0002 7 6 4.9614 -2.2578 0.0002 8 8 5.3632 -2.7120 1.0506 9 6 5.4604 -2.8225 -1.3049 10 7 6.4150 -3.9011 -1.0371 11 6 7.8254 -3.5876 -0.7950 12 16 5.8996 -5.4746 -1.0081 13 6 5.4327 -5.7662 0.7204 14 8 7.0559 -6.2283 -1.3462 15 8 4.7500 -5.4823 -1.8433 16 6 3.5671 -0.6923 1.2644 17 6 2.0398 -0.7207 1.2502 18 1 1.6973 -1.7555 1.2387 19 6 1.5027 -0.0188 2.4990 20 7 1.8916 -0.7770 3.6907 21 6 1.5200 -0.3376 4.9333 22 1 0.9399 0.5677 5.0347 23 6 1.8880 -1.0563 6.0623 24 7 2.5946 -2.1599 5.9387 25 14 1.3805 -0.4573 7.7574 26 1 0.5984 0.7981 7.6250 27 1 0.5473 -1.4929 8.4194 28 1 2.5932 -0.2003 8.5752 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5133 0.8902 31 1 -0.3632 0.5144 -0.8897 32 1 1.6574 -0.2208 -2.1398 33 1 1.6979 -1.7556 -1.2383 34 1 3.9144 0.3409 -1.3672 35 1 3.9418 -1.2846 -2.0982 36 1 5.9518 -2.0356 -1.8769 37 1 4.6194 -3.2157 -1.8759 38 1 8.3660 -3.5909 -1.7415 39 1 7.9050 -2.6028 -0.3346 40 1 8.2548 -4.3359 -0.1288 41 1 4.6407 -5.0733 1.0047 42 1 6.2997 -5.6100 1.3623 43 1 5.0775 -6.7906 0.8330 44 1 3.9346 -1.2907 2.0981 45 1 3.9096 0.3369 1.3717 46 1 1.9177 0.9875 2.5571 47 1 0.4156 0.0392 2.4440 48 1 2.4117 -1.5907 3.5994 49 1 2.8521 -2.6619 6.7277 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132865027.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:17 Heat of formation + Delta-G solvation = -88.091882 kcal Electronic energy + Delta-G solvation = -30410.786026 eV Core-core repulsion = 26307.730152 eV Total energy + Delta-G solvation = -4103.055874 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.38125 -38.26063 -37.31468 -36.23292 -35.81630 -35.05098 -33.74604 -31.94606 -30.06116 -29.46475 -29.27912 -27.89564 -25.95244 -24.92324 -23.33415 -23.15149 -21.27013 -20.21614 -19.34487 -18.80781 -17.96406 -17.47825 -16.98484 -16.65482 -16.25442 -15.73501 -15.36252 -14.88939 -14.68035 -14.39857 -14.31840 -13.98816 -13.68038 -13.55060 -13.42600 -13.27882 -13.11624 -13.08375 -12.83618 -12.66258 -12.64824 -12.38300 -12.26252 -11.95283 -11.80313 -11.78297 -11.71670 -11.52775 -11.17111 -11.02315 -10.91846 -10.82805 -10.64703 -10.33669 -10.19519 -10.17624 -9.92574 -9.62659 -9.11177 -8.87413 -8.57335 -6.90371 -5.74585 -3.03877 0.11858 2.29060 2.55584 2.99815 3.43635 3.48934 3.51463 3.67407 3.98538 4.32079 4.35469 4.57239 4.65160 4.79166 4.84056 4.86010 4.92023 5.01215 5.06194 5.11986 5.23522 5.30918 5.35355 5.55954 5.57757 5.60259 5.64160 5.65744 5.69992 5.77272 5.84955 5.89458 5.92597 5.99556 6.12078 6.14436 6.20611 6.30315 6.42371 6.52384 6.58417 6.78639 6.86499 7.39971 7.71156 8.14044 8.43441 9.54701 10.12565 10.46600 11.47903 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010706 B = 0.003311 C = 0.002745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2614.830346 B = 8453.498183 C =10198.827992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.084 4.084 3 H 0.071 0.929 4 C -0.131 4.131 5 C 0.103 3.897 6 N -0.607 5.607 7 C 0.484 3.516 8 O -0.525 6.525 9 C 0.097 3.903 10 N -0.984 5.984 11 C 0.100 3.900 12 S 2.611 3.389 13 C -0.659 4.659 14 O -0.957 6.957 15 O -0.960 6.960 16 C 0.119 3.881 17 C -0.103 4.103 18 H 0.074 0.926 19 C 0.159 3.841 20 N -0.733 5.733 21 C -0.240 4.240 22 H 0.070 0.930 23 C -0.013 4.013 24 N -0.930 5.930 25 Si 0.905 3.095 26 H -0.281 1.281 27 H -0.292 1.292 28 H -0.292 1.292 29 H 0.054 0.946 30 H 0.065 0.935 31 H 0.049 0.951 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.082 0.918 36 H 0.112 0.888 37 H 0.123 0.877 38 H 0.059 0.941 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.136 0.864 42 H 0.131 0.869 43 H 0.123 0.877 44 H 0.104 0.896 45 H 0.066 0.934 46 H 0.018 0.982 47 H 0.027 0.973 48 H 0.384 0.616 49 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.779 0.302 -20.616 21.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.103 4.103 3 H 0.089 0.911 4 C -0.169 4.169 5 C -0.020 4.020 6 N -0.342 5.342 7 C 0.269 3.731 8 O -0.400 6.400 9 C -0.033 4.033 10 N -0.820 5.820 11 C -0.045 4.045 12 S 2.704 3.296 13 C -0.810 4.810 14 O -0.948 6.948 15 O -0.951 6.951 16 C -0.003 4.003 17 C -0.122 4.122 18 H 0.092 0.908 19 C 0.031 3.969 20 N -0.378 5.378 21 C -0.371 4.371 22 H 0.088 0.912 23 C -0.209 4.209 24 N -0.579 5.579 25 Si 0.736 3.264 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.219 1.219 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.068 0.932 32 H 0.093 0.907 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.100 0.900 36 H 0.130 0.870 37 H 0.141 0.859 38 H 0.078 0.922 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.154 0.846 42 H 0.149 0.851 43 H 0.142 0.858 44 H 0.122 0.878 45 H 0.084 0.916 46 H 0.036 0.964 47 H 0.045 0.955 48 H 0.218 0.782 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 5.943 -0.420 -20.658 21.500 hybrid contribution -0.268 0.398 1.779 1.842 sum 5.675 -0.021 -18.879 19.714 Atomic orbital electron populations 1.21882 0.94921 1.02015 1.01723 1.21091 0.96039 0.99339 0.93879 0.91065 1.22004 0.94443 1.01895 0.98569 1.21812 0.95097 0.99422 0.85642 1.48231 1.42739 1.35247 1.07951 1.21323 0.79531 0.80102 0.92104 1.90757 1.57069 1.59214 1.33009 1.21340 0.94543 0.92184 0.95222 1.57116 1.15212 1.23192 1.86449 1.21449 0.78989 1.02824 1.01268 1.04912 0.74158 0.72694 0.77814 1.30436 1.13693 1.11282 1.25560 1.93599 1.49121 1.69301 1.82760 1.93578 1.51935 1.85376 1.64178 1.21663 0.93725 0.99227 0.85642 1.21649 0.94530 1.00807 0.95249 0.90791 1.20726 0.96878 0.94014 0.85319 1.42421 1.65437 1.29075 1.00845 1.19246 1.27813 1.06305 0.83785 0.91195 1.24741 1.00845 0.97496 0.97804 1.69680 1.42536 1.17286 1.28386 0.86147 0.77645 0.77737 0.84827 1.20583 1.21908 1.21900 0.92735 0.91648 0.93189 0.90674 0.91214 0.91024 0.89965 0.87007 0.85889 0.92187 0.90866 0.90886 0.84589 0.85075 0.85848 0.87782 0.91607 0.96404 0.95488 0.78187 0.93577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 8.82 37.16 0.33 -1.32 16 2 C -0.08 -0.95 2.23 -90.57 -0.20 -1.16 16 3 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 4 C -0.13 -1.16 5.36 -26.61 -0.14 -1.31 16 5 C 0.10 0.86 6.34 -3.71 -0.02 0.83 16 6 N -0.61 -7.41 2.98 -173.03 -0.52 -7.92 16 7 C 0.48 6.24 7.76 -10.99 -0.09 6.16 16 8 O -0.52 -8.73 14.42 5.55 0.08 -8.65 16 9 C 0.10 0.90 4.46 -5.19 -0.02 0.87 16 10 N -0.98 -9.97 2.61 -123.05 -0.32 -10.29 16 11 C 0.10 0.86 10.20 59.85 0.61 1.47 16 12 S 2.61 29.44 6.02 -107.50 -0.65 28.79 16 13 C -0.66 -7.18 10.52 101.05 1.06 -6.12 16 14 O -0.96 -12.81 17.09 -57.54 -0.98 -13.79 16 15 O -0.96 -12.89 16.53 -57.54 -0.95 -13.84 16 16 C 0.12 1.84 5.49 -3.93 -0.02 1.82 16 17 C -0.10 -1.57 1.90 -90.72 -0.17 -1.74 16 18 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 19 C 0.16 3.05 5.41 -4.04 -0.02 3.03 16 20 N -0.73 -18.38 5.38 -59.91 -0.32 -18.70 16 21 C -0.24 -6.72 9.99 -15.06 -0.15 -6.87 16 22 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 23 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 24 N -0.93 -28.48 13.06 55.49 0.72 -27.76 16 25 Si 0.91 22.53 29.55 -169.99 -5.02 17.51 16 26 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 27 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 28 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.81 6.29 -51.93 -0.33 0.48 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.08 0.48 5.93 -51.93 -0.31 0.17 16 36 H 0.11 0.69 7.91 -51.93 -0.41 0.28 16 37 H 0.12 1.05 6.37 -51.93 -0.33 0.72 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.07 0.60 8.07 -51.93 -0.42 0.18 16 40 H 0.07 0.60 7.79 -51.93 -0.40 0.20 16 41 H 0.14 1.73 7.22 -51.92 -0.37 1.35 16 42 H 0.13 1.36 8.14 -51.92 -0.42 0.94 16 43 H 0.12 1.10 8.14 -51.92 -0.42 0.68 16 44 H 0.10 2.04 6.20 -51.93 -0.32 1.72 16 45 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 46 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 47 H 0.03 0.53 6.14 -51.93 -0.32 0.21 16 48 H 0.38 10.30 6.89 -40.82 -0.28 10.02 16 49 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 395.61 15.07 5.96 5.96 Total: -1.00 -36.59 395.61 -9.05 -45.64 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: -8.12 Total: 7.85 kcal Atomic # 6 Polarization: -5.85 SS G_CDS: 1.06 Total: -4.79 kcal Atomic # 7 Polarization: -64.24 SS G_CDS: -0.43 Total: -64.68 kcal Atomic # 8 Polarization: -34.43 SS G_CDS: -1.85 Total: -36.28 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Atomic # 16 Polarization: 29.44 SS G_CDS: -0.65 Total: 28.79 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -36.59 -9.05 -45.64 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132865027.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.453 kcal (2) G-P(sol) polarization free energy of solvation -36.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds