Wall clock time and date at job start Wed Apr 1 2020 05:08:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.44935 * 2 1 4 4 C 1.53039 * 109.46411 * 240.02917 * 2 1 3 5 5 C 1.53194 * 109.31541 * 178.61341 * 4 2 1 6 6 N 1.46931 * 108.77143 * 54.64061 * 5 4 2 7 7 C 1.34765 * 120.62732 * 126.36857 * 6 5 4 8 8 O 1.21286 * 119.99671 * 180.02562 * 7 6 5 9 9 C 1.50703 * 120.00650 * 359.97438 * 7 6 5 10 10 N 1.46496 * 109.47501 * 180.02562 * 9 7 6 11 11 C 1.46501 * 119.99919 * 275.00087 * 10 9 7 12 12 S 1.65600 * 120.00029 * 94.99693 * 10 9 7 13 13 C 1.81404 * 104.45074 * 270.00042 * 12 10 9 14 14 O 1.42107 * 104.27629 * 153.93080 * 12 10 9 15 15 O 1.42102 * 104.27841 * 26.07217 * 12 10 9 16 16 C 1.46925 * 118.73665 * 306.64016 * 6 5 4 17 17 C 1.52764 * 109.01013 * 53.31312 * 16 6 5 18 18 H 1.09000 * 109.38588 * 65.50981 * 17 16 6 19 19 C 1.52998 * 109.56634 * 185.55368 * 17 16 6 20 20 N 1.46503 * 109.46623 * 294.96509 * 19 17 16 21 21 C 1.36937 * 119.99699 * 180.02562 * 20 19 17 22 22 H 1.08000 * 120.00138 * 0.02562 * 21 20 19 23 23 C 1.38809 * 119.99932 * 179.97438 * 21 20 19 24 24 N 1.31622 * 120.00159 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 120.00068 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.46905 * 359.97438 * 25 23 21 27 27 H 1.48494 * 109.47261 * 120.00311 * 25 23 21 28 28 H 1.48505 * 109.47166 * 240.00323 * 25 23 21 29 29 H 1.08998 * 109.46958 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47142 * 299.96899 * 1 2 3 31 31 H 1.09002 * 109.46483 * 59.96700 * 1 2 3 32 32 H 1.09004 * 109.49405 * 58.66662 * 4 2 1 33 33 H 1.08994 * 109.50116 * 298.57589 * 4 2 1 34 34 H 1.09001 * 109.58498 * 294.85342 * 5 4 2 35 35 H 1.08998 * 109.58315 * 174.42294 * 5 4 2 36 36 H 1.08995 * 109.46641 * 59.99684 * 9 7 6 37 37 H 1.08999 * 109.46849 * 299.99957 * 9 7 6 38 38 H 1.09003 * 109.46906 * 269.99787 * 11 10 9 39 39 H 1.08997 * 109.47334 * 29.99690 * 11 10 9 40 40 H 1.09000 * 109.47460 * 149.99847 * 11 10 9 41 41 H 1.09002 * 109.47124 * 60.00022 * 13 12 10 42 42 H 1.09001 * 109.46975 * 300.00144 * 13 12 10 43 43 H 1.09004 * 109.47147 * 180.02562 * 13 12 10 44 44 H 1.08998 * 109.58688 * 173.14704 * 16 6 5 45 45 H 1.08996 * 109.58870 * 293.57450 * 16 6 5 46 46 H 1.09004 * 109.47300 * 54.96199 * 19 17 16 47 47 H 1.09003 * 109.47137 * 174.96803 * 19 17 16 48 48 H 0.97000 * 120.00074 * 359.97438 * 20 19 17 49 49 H 0.96998 * 120.00071 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0400 -0.7208 -1.2500 5 6 3.5715 -0.6886 -1.2641 6 7 4.0679 -1.2489 0.0002 7 6 4.9614 -2.2578 0.0002 8 8 5.3632 -2.7120 1.0506 9 6 5.4604 -2.8225 -1.3049 10 7 6.4150 -3.9011 -1.0371 11 6 7.8254 -3.5876 -0.7950 12 16 5.8996 -5.4746 -1.0081 13 6 5.4327 -5.7662 0.7204 14 8 7.0559 -6.2283 -1.3462 15 8 4.7500 -5.4823 -1.8433 16 6 3.5671 -0.6923 1.2644 17 6 2.0398 -0.7207 1.2502 18 1 1.6973 -1.7555 1.2387 19 6 1.5027 -0.0188 2.4990 20 7 1.8916 -0.7770 3.6907 21 6 1.5200 -0.3376 4.9333 22 1 0.9399 0.5677 5.0347 23 6 1.8880 -1.0563 6.0623 24 7 2.5946 -2.1599 5.9387 25 14 1.3805 -0.4573 7.7574 26 1 0.5984 0.7981 7.6250 27 1 0.5473 -1.4929 8.4194 28 1 2.5932 -0.2003 8.5752 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5133 0.8902 31 1 -0.3632 0.5144 -0.8897 32 1 1.6574 -0.2208 -2.1398 33 1 1.6979 -1.7556 -1.2383 34 1 3.9144 0.3409 -1.3672 35 1 3.9418 -1.2846 -2.0982 36 1 5.9518 -2.0356 -1.8769 37 1 4.6194 -3.2157 -1.8759 38 1 8.3660 -3.5909 -1.7415 39 1 7.9050 -2.6028 -0.3346 40 1 8.2548 -4.3359 -0.1288 41 1 4.6407 -5.0733 1.0047 42 1 6.2997 -5.6100 1.3623 43 1 5.0775 -6.7906 0.8330 44 1 3.9346 -1.2907 2.0981 45 1 3.9096 0.3369 1.3717 46 1 1.9177 0.9875 2.5571 47 1 0.4156 0.0392 2.4440 48 1 2.4117 -1.5907 3.5994 49 1 2.8521 -2.6619 6.7277 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132865027.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:16 Heat of formation + Delta-G solvation = -116.024411 kcal Electronic energy + Delta-G solvation = -30411.997271 eV Core-core repulsion = 26307.730152 eV Total energy + Delta-G solvation = -4104.267119 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.38161 -39.33259 -38.30234 -37.19991 -36.72403 -36.57367 -35.05591 -33.51142 -31.61641 -30.36171 -30.15057 -28.89425 -27.30185 -26.00955 -24.88533 -24.17153 -22.55278 -21.34411 -20.34144 -19.70951 -19.15553 -18.84044 -18.27587 -17.55367 -17.20067 -16.76931 -16.74983 -16.34254 -15.68667 -15.55960 -15.36943 -15.31030 -15.08255 -14.55223 -14.35759 -14.33254 -14.21448 -14.07605 -14.02439 -13.80411 -13.69066 -13.41743 -13.26787 -13.08626 -13.04688 -12.81526 -12.65898 -12.63631 -12.59933 -12.48854 -12.13269 -12.11279 -11.95306 -11.90667 -11.74498 -11.32820 -11.18229 -11.04512 -10.93470 -9.97119 -9.59354 -8.99869 -7.95995 -5.25416 -0.78077 1.44121 1.44564 1.45805 1.55915 1.59458 2.05535 2.54245 2.76414 3.07737 3.37656 3.49323 3.60050 3.73411 3.85273 3.89895 4.01332 4.05200 4.10493 4.23846 4.29533 4.32758 4.39126 4.46939 4.61952 4.63456 4.72665 4.79394 4.81904 4.85307 4.89636 4.96615 4.98919 4.99695 5.01968 5.11632 5.16953 5.27297 5.29946 5.39166 5.47228 5.48867 5.58885 5.61906 6.25372 6.46412 7.17159 7.31179 8.08321 8.30016 9.27690 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010706 B = 0.003311 C = 0.002745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2614.830346 B = 8453.498183 C =10198.827992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.079 4.079 3 H 0.084 0.916 4 C -0.127 4.127 5 C 0.096 3.904 6 N -0.606 5.606 7 C 0.475 3.525 8 O -0.573 6.573 9 C 0.100 3.900 10 N -0.985 5.985 11 C 0.092 3.908 12 S 2.632 3.368 13 C -0.662 4.662 14 O -0.977 6.977 15 O -0.980 6.980 16 C 0.128 3.872 17 C -0.090 4.090 18 H 0.049 0.951 19 C 0.157 3.843 20 N -0.747 5.747 21 C -0.243 4.243 22 H 0.078 0.922 23 C -0.077 4.077 24 N -0.971 5.971 25 Si 0.973 3.027 26 H -0.263 1.263 27 H -0.294 1.294 28 H -0.294 1.294 29 H 0.044 0.956 30 H 0.047 0.953 31 H 0.078 0.922 32 H 0.111 0.889 33 H 0.058 0.942 34 H 0.094 0.906 35 H 0.117 0.883 36 H 0.155 0.845 37 H 0.136 0.864 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.070 0.930 41 H 0.115 0.885 42 H 0.133 0.867 43 H 0.140 0.860 44 H 0.052 0.948 45 H 0.069 0.931 46 H 0.023 0.977 47 H 0.031 0.969 48 H 0.371 0.629 49 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.549 2.094 -23.355 24.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.098 4.098 3 H 0.103 0.897 4 C -0.165 4.165 5 C -0.025 4.025 6 N -0.339 5.339 7 C 0.262 3.738 8 O -0.452 6.452 9 C -0.029 4.029 10 N -0.821 5.821 11 C -0.052 4.052 12 S 2.726 3.274 13 C -0.813 4.813 14 O -0.968 6.968 15 O -0.970 6.970 16 C 0.005 3.995 17 C -0.110 4.110 18 H 0.067 0.933 19 C 0.030 3.970 20 N -0.390 5.390 21 C -0.375 4.375 22 H 0.096 0.904 23 C -0.269 4.269 24 N -0.622 5.622 25 Si 0.802 3.198 26 H -0.187 1.187 27 H -0.221 1.221 28 H -0.222 1.222 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.097 0.903 32 H 0.129 0.871 33 H 0.077 0.923 34 H 0.112 0.888 35 H 0.135 0.865 36 H 0.173 0.827 37 H 0.154 0.846 38 H 0.098 0.902 39 H 0.095 0.905 40 H 0.089 0.911 41 H 0.134 0.866 42 H 0.151 0.849 43 H 0.159 0.841 44 H 0.071 0.929 45 H 0.087 0.913 46 H 0.041 0.959 47 H 0.048 0.952 48 H 0.202 0.798 49 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 5.680 1.423 -23.463 24.183 hybrid contribution -0.222 -0.102 2.604 2.616 sum 5.458 1.321 -20.859 21.602 Atomic orbital electron populations 1.21863 0.94679 1.01553 1.02264 1.21091 0.96184 0.99714 0.92775 0.89727 1.22012 0.94857 1.01287 0.98305 1.22221 0.94699 1.01236 0.84373 1.48308 1.42387 1.35065 1.08138 1.22126 0.79027 0.79650 0.92955 1.90744 1.58759 1.60642 1.35058 1.21574 0.95188 0.92931 0.93178 1.57051 1.16018 1.22873 1.86193 1.21637 0.78232 1.02937 1.02421 1.04172 0.73235 0.72734 0.77232 1.30455 1.13172 1.11930 1.25746 1.93568 1.49778 1.70291 1.83123 1.93541 1.52688 1.85894 1.64921 1.21256 0.93678 0.98414 0.86182 1.21498 0.94393 0.99444 0.95638 0.93284 1.20924 0.97063 0.93880 0.85128 1.42674 1.65225 1.29106 1.01981 1.19692 1.26648 1.06075 0.85065 0.90424 1.25594 1.01646 0.97958 1.01733 1.69860 1.44502 1.18883 1.28985 0.85073 0.77092 0.77695 0.79913 1.18688 1.22118 1.22167 0.93725 0.93434 0.90272 0.87062 0.92311 0.88751 0.86527 0.82742 0.84596 0.90162 0.90535 0.91122 0.86573 0.84866 0.84121 0.92902 0.91263 0.95934 0.95159 0.79775 0.94180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.96 8.82 71.98 0.63 -2.33 16 2 C -0.08 -1.61 2.23 -10.76 -0.02 -1.63 16 3 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 4 C -0.13 -1.79 5.36 30.67 0.16 -1.62 16 5 C 0.10 1.21 6.34 86.36 0.55 1.76 16 6 N -0.61 -14.09 2.98 -819.73 -2.44 -16.53 16 7 C 0.48 12.01 7.76 87.66 0.68 12.69 16 8 O -0.57 -19.96 14.42 -3.05 -0.04 -20.00 16 9 C 0.10 1.61 4.46 85.63 0.38 1.99 16 10 N -0.99 -18.61 2.61 -543.23 -1.42 -20.03 16 11 C 0.09 1.45 10.20 127.77 1.30 2.76 16 12 S 2.63 58.12 6.02 -56.49 -0.34 57.78 16 13 C -0.66 -15.02 10.52 113.37 1.19 -13.82 16 14 O -0.98 -25.53 17.09 -127.65 -2.18 -27.71 16 15 O -0.98 -25.41 16.53 -127.65 -2.11 -27.52 16 16 C 0.13 4.07 5.49 86.22 0.47 4.54 16 17 C -0.09 -2.79 1.90 -10.86 -0.02 -2.81 16 18 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 19 C 0.16 6.15 5.41 86.38 0.47 6.62 16 20 N -0.75 -39.01 5.38 -343.44 -1.85 -40.85 16 21 C -0.24 -13.86 9.99 84.03 0.84 -13.02 16 22 H 0.08 4.22 7.83 -2.91 -0.02 4.19 16 23 C -0.08 -4.57 5.50 84.86 0.47 -4.10 16 24 N -0.97 -61.86 13.06 21.65 0.28 -61.58 16 25 Si 0.97 47.17 29.55 68.60 2.03 49.20 16 26 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 27 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16 28 H -0.29 -14.28 7.11 99.48 0.71 -13.58 16 29 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.05 1.12 6.29 -2.39 -0.02 1.10 16 31 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.11 0.88 8.14 -2.38 -0.02 0.86 16 33 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.12 0.73 5.93 -2.39 -0.01 0.72 16 36 H 0.16 1.19 7.91 -2.39 -0.02 1.17 16 37 H 0.14 1.90 6.37 -2.39 -0.02 1.89 16 38 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.08 1.16 8.07 -2.39 -0.02 1.14 16 40 H 0.07 1.13 7.79 -2.39 -0.02 1.11 16 41 H 0.12 3.18 7.22 -2.39 -0.02 3.17 16 42 H 0.13 2.92 8.14 -2.39 -0.02 2.90 16 43 H 0.14 2.57 8.14 -2.39 -0.02 2.55 16 44 H 0.05 2.24 6.20 -2.39 -0.01 2.23 16 45 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 46 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 47 H 0.03 1.19 6.14 -2.39 -0.01 1.17 16 48 H 0.37 21.16 6.89 -92.71 -0.64 20.52 16 49 H 0.25 15.39 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -83.38 395.61 -0.65 -84.03 By element: Atomic # 1 Polarization: 31.89 SS G_CDS: 0.31 Total: 32.19 kcal Atomic # 6 Polarization: -16.09 SS G_CDS: 7.11 Total: -8.98 kcal Atomic # 7 Polarization: -133.57 SS G_CDS: -5.42 Total: -138.99 kcal Atomic # 8 Polarization: -70.90 SS G_CDS: -4.34 Total: -75.23 kcal Atomic # 14 Polarization: 47.17 SS G_CDS: 2.03 Total: 49.20 kcal Atomic # 16 Polarization: 58.12 SS G_CDS: -0.34 Total: 57.78 kcal Total: -83.38 -0.65 -84.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132865027.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.990 kcal (2) G-P(sol) polarization free energy of solvation -83.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds