Wall clock time and date at job start Wed Apr 1 2020 05:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.45313 * 2 1 4 4 C 1.53039 * 109.43264 * 240.01167 * 2 1 3 5 5 C 1.53190 * 109.34307 * 301.31494 * 4 2 1 6 6 N 1.46924 * 108.77418 * 305.38330 * 5 4 2 7 7 C 1.34779 * 120.62723 * 233.62524 * 6 5 4 8 8 O 1.21280 * 120.00054 * 179.97438 * 7 6 5 9 9 C 1.50707 * 120.00020 * 359.97438 * 7 6 5 10 10 C 1.52995 * 109.47200 * 180.02562 * 9 7 6 11 11 C 1.52994 * 109.47448 * 179.97438 * 10 9 7 12 12 S 1.81401 * 109.47596 * 179.97438 * 11 10 9 13 13 N 1.65596 * 104.45154 * 180.02562 * 12 11 10 14 14 O 1.42102 * 110.53979 * 291.62588 * 12 11 10 15 15 O 1.42100 * 110.54111 * 68.37119 * 12 11 10 16 16 C 1.46920 * 118.74084 * 53.60743 * 6 5 4 17 17 C 1.53044 * 109.45728 * 119.96340 * 2 1 3 18 18 H 1.09006 * 109.49492 * 178.63930 * 17 2 1 19 19 C 1.52993 * 109.49965 * 298.69955 * 17 2 1 20 20 N 1.46496 * 109.47551 * 184.93463 * 19 17 2 21 21 C 1.36934 * 120.00548 * 179.97438 * 20 19 17 22 22 H 1.08004 * 119.99288 * 0.02562 * 21 20 19 23 23 C 1.38805 * 120.00389 * 180.02562 * 21 20 19 24 24 N 1.31624 * 120.00257 * 180.02562 * 23 21 20 25 25 Si 1.86803 * 119.99929 * 359.97438 * 23 21 20 26 26 H 1.48498 * 109.47174 * 270.00277 * 25 23 21 27 27 H 1.48501 * 109.47062 * 30.00228 * 25 23 21 28 28 H 1.48499 * 109.46981 * 150.00382 * 25 23 21 29 29 H 1.09001 * 109.47027 * 300.03973 * 1 2 3 30 30 H 1.09005 * 109.46755 * 60.03716 * 1 2 3 31 31 H 1.08990 * 109.47566 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47491 * 181.36138 * 4 2 1 33 33 H 1.09003 * 109.52228 * 61.30221 * 4 2 1 34 34 H 1.08994 * 109.58894 * 185.58796 * 5 4 2 35 35 H 1.09003 * 109.58289 * 65.16656 * 5 4 2 36 36 H 1.09006 * 109.46740 * 299.99468 * 9 7 6 37 37 H 1.08992 * 109.47449 * 59.99516 * 9 7 6 38 38 H 1.09006 * 109.46792 * 299.99378 * 10 9 7 39 39 H 1.08996 * 109.47666 * 59.99023 * 10 9 7 40 40 H 1.08999 * 109.46931 * 299.99967 * 11 10 9 41 41 H 1.09005 * 109.47107 * 59.99221 * 11 10 9 42 42 H 0.96994 * 120.00324 * 149.99972 * 13 12 11 43 43 H 0.97010 * 119.99859 * 329.99671 * 13 12 11 44 44 H 1.09003 * 109.58647 * 186.60774 * 16 6 5 45 45 H 1.08997 * 109.59108 * 66.18275 * 16 6 5 46 46 H 1.09004 * 109.46862 * 64.93662 * 19 17 2 47 47 H 1.09004 * 109.46998 * 304.94139 * 19 17 2 48 48 H 0.96999 * 119.99694 * 0.02562 * 20 19 17 49 49 H 0.97001 * 119.99885 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0391 -0.7213 -1.2500 5 6 1.4995 -2.1550 -1.2637 6 7 1.8630 -2.8092 0.0006 7 6 2.5174 -3.9875 0.0007 8 8 2.8123 -4.5172 1.0511 9 6 2.8826 -4.6467 -1.3044 10 6 3.6124 -5.9620 -1.0247 11 6 3.9826 -6.6316 -2.3496 12 16 4.8486 -8.1906 -2.0180 13 7 5.1874 -8.8025 -3.5190 14 8 6.1251 -7.9401 -1.4460 15 8 3.9621 -9.1410 -1.4434 16 6 1.5001 -2.1543 1.2648 17 6 2.0398 -0.7207 1.2502 18 1 3.1296 -0.7423 1.2387 19 6 1.5569 0.0195 2.4990 20 7 2.1410 -0.6006 3.6908 21 6 1.8503 -0.1041 4.9334 22 1 1.1899 0.7445 5.0348 23 6 2.4042 -0.6913 6.0625 24 7 2.1243 -0.2144 7.2570 25 14 3.5458 -2.1595 5.8871 26 1 2.7504 -3.4128 5.9296 27 1 4.2663 -2.0742 4.5914 28 1 4.5280 -2.1586 7.0008 29 1 -0.3633 0.5145 0.8896 30 1 -0.3633 0.5133 -0.8904 31 1 -0.3634 -1.0275 0.0005 32 1 3.1289 -0.7429 -1.2386 33 1 1.6951 -0.1946 -2.1401 34 1 1.9381 -2.7026 -2.0978 35 1 0.4145 -2.1360 -1.3665 36 1 1.9763 -4.8489 -1.8754 37 1 3.5324 -3.9847 -1.8765 38 1 4.5186 -5.7602 -0.4535 39 1 2.9623 -6.6238 -0.4526 40 1 3.0762 -6.8333 -2.9204 41 1 4.6327 -5.9698 -2.9220 42 1 5.9740 -9.3542 -3.6517 43 1 4.5990 -8.6092 -4.2657 44 1 1.9392 -2.7015 2.0990 45 1 0.4152 -2.1354 1.3682 46 1 0.4698 -0.0358 2.5565 47 1 1.8652 1.0636 2.4444 48 1 2.7344 -1.3625 3.5996 49 1 2.5111 -0.6250 8.0460 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133088175.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:36 Heat of formation + Delta-G solvation = -107.726238 kcal Electronic energy + Delta-G solvation = -29268.025862 eV Core-core repulsion = 25164.118579 eV Total energy + Delta-G solvation = -4103.907283 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.56857 -38.41278 -37.39301 -36.30072 -35.18837 -35.07060 -33.66896 -33.64322 -31.96122 -30.40882 -29.14089 -27.70867 -25.75671 -24.85028 -23.01100 -22.66783 -21.14226 -19.88167 -19.82946 -18.45971 -17.98762 -17.71743 -17.55410 -17.09297 -16.72330 -16.19446 -15.88678 -15.51769 -15.14120 -15.03651 -14.79442 -14.20793 -13.98644 -13.63565 -13.60438 -13.22891 -13.17156 -12.72322 -12.58635 -12.55737 -12.51966 -12.45272 -12.43491 -12.32730 -11.98352 -11.79095 -11.55293 -11.40901 -11.24581 -11.23345 -11.08103 -10.84916 -10.81957 -10.70563 -10.37592 -10.19165 -10.03502 -9.76014 -9.52188 -8.84324 -8.60189 -7.18199 -5.72089 -3.07689 -0.20489 2.43148 2.54411 2.87145 3.27317 3.47647 3.52496 3.56437 3.79606 3.92496 4.37221 4.40515 4.46978 4.58916 4.66470 4.69467 4.76600 4.79582 4.94796 5.02064 5.06256 5.13346 5.23064 5.41968 5.45067 5.46469 5.50179 5.56056 5.59716 5.63459 5.65595 5.73802 5.76017 5.86474 5.95890 6.17135 6.20865 6.24128 6.39181 6.48323 6.53677 6.66074 6.77151 7.33910 8.03234 8.11142 8.46895 9.25956 9.98947 10.17959 11.46074 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010930 B = 0.002688 C = 0.002226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2561.201622 B =10414.876099 C =12577.145557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.084 4.084 3 H 0.076 0.924 4 C -0.130 4.130 5 C 0.105 3.895 6 N -0.611 5.611 7 C 0.507 3.493 8 O -0.533 6.533 9 C -0.130 4.130 10 C -0.101 4.101 11 C -0.624 4.624 12 S 2.615 3.385 13 N -1.253 6.253 14 O -0.959 6.959 15 O -0.958 6.958 16 C 0.117 3.883 17 C -0.107 4.107 18 H 0.073 0.927 19 C 0.165 3.835 20 N -0.757 5.757 21 C -0.245 4.245 22 H 0.090 0.910 23 C 0.006 3.994 24 N -0.934 5.934 25 Si 0.882 3.118 26 H -0.282 1.282 27 H -0.277 1.277 28 H -0.291 1.291 29 H 0.065 0.935 30 H 0.051 0.949 31 H 0.056 0.944 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.134 0.866 41 H 0.137 0.863 42 H 0.420 0.580 43 H 0.412 0.588 44 H 0.096 0.904 45 H 0.072 0.928 46 H 0.031 0.969 47 H 0.029 0.971 48 H 0.362 0.638 49 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.764 -10.130 -32.577 34.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.103 4.103 3 H 0.094 0.906 4 C -0.168 4.168 5 C -0.018 4.018 6 N -0.344 5.344 7 C 0.294 3.706 8 O -0.410 6.410 9 C -0.171 4.171 10 C -0.140 4.140 11 C -0.753 4.753 12 S 2.706 3.294 13 N -0.925 5.925 14 O -0.948 6.948 15 O -0.947 6.947 16 C -0.005 4.005 17 C -0.126 4.126 18 H 0.091 0.909 19 C 0.037 3.963 20 N -0.403 5.403 21 C -0.375 4.375 22 H 0.108 0.892 23 C -0.190 4.190 24 N -0.582 5.582 25 Si 0.712 3.288 26 H -0.208 1.208 27 H -0.203 1.203 28 H -0.217 1.217 29 H 0.084 0.916 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.099 0.901 35 H 0.091 0.909 36 H 0.115 0.885 37 H 0.116 0.884 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.153 0.847 41 H 0.155 0.845 42 H 0.250 0.750 43 H 0.238 0.762 44 H 0.114 0.886 45 H 0.091 0.909 46 H 0.049 0.951 47 H 0.047 0.953 48 H 0.195 0.805 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.018 -10.630 -30.792 32.591 hybrid contribution 0.636 -0.530 -1.005 1.302 sum 1.654 -11.160 -31.797 33.739 Atomic orbital electron populations 1.21997 0.95054 1.02005 1.02043 1.21057 0.96156 0.99468 0.93636 0.90604 1.21950 1.01149 0.95064 0.98623 1.21796 1.00560 0.93803 0.85685 1.48187 1.57347 1.21112 1.07792 1.20596 0.77691 0.80958 0.91310 1.90772 1.53390 1.63264 1.33541 1.21620 1.02254 0.96839 0.96382 1.21083 1.03141 0.96946 0.92839 1.30500 1.14878 1.21935 1.07998 1.04759 0.75094 0.76480 0.73031 1.53272 1.39937 1.69500 1.29786 1.93630 1.39615 1.85963 1.75627 1.93641 1.68108 1.57652 1.75274 1.21758 1.00236 0.92869 0.85630 1.21747 1.00850 0.94474 0.95555 0.90887 1.20661 0.96374 0.94934 0.84320 1.42780 1.57367 1.37562 1.02581 1.19023 1.24233 1.12357 0.81840 0.89248 1.24654 1.00156 0.99056 0.95116 1.69707 1.48344 1.43167 0.97017 0.86592 0.81362 0.83873 0.76969 1.20834 1.20310 1.21719 0.91585 0.93026 0.92462 0.91522 0.90717 0.90129 0.90893 0.88495 0.88442 0.89079 0.89113 0.84734 0.84462 0.75028 0.76230 0.88588 0.90935 0.95076 0.95321 0.80525 0.93081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 8.11 37.16 0.30 -1.23 16 2 C -0.08 -0.91 2.71 -90.58 -0.25 -1.15 16 3 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 4 C -0.13 -1.05 5.62 -26.61 -0.15 -1.20 16 5 C 0.10 0.81 5.87 -3.71 -0.02 0.79 16 6 N -0.61 -7.36 2.97 -172.77 -0.51 -7.87 16 7 C 0.51 6.64 7.70 -10.98 -0.08 6.56 16 8 O -0.53 -9.71 15.40 5.56 0.09 -9.62 16 9 C -0.13 -0.99 4.05 -27.88 -0.11 -1.10 16 10 C -0.10 -0.85 4.51 -26.74 -0.12 -0.97 16 11 C -0.62 -2.54 6.17 37.15 0.23 -2.31 16 12 S 2.62 18.31 5.97 -107.50 -0.64 17.67 16 13 N -1.25 -3.84 9.36 60.35 0.57 -3.28 16 14 O -0.96 -10.94 18.10 -57.54 -1.04 -11.99 16 15 O -0.96 -10.95 18.10 -57.54 -1.04 -11.99 16 16 C 0.12 1.78 5.05 -3.71 -0.02 1.76 16 17 C -0.11 -1.58 2.15 -90.50 -0.19 -1.78 16 18 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 19 C 0.16 3.12 5.19 -4.05 -0.02 3.09 16 20 N -0.76 -18.45 5.18 -59.91 -0.31 -18.76 16 21 C -0.24 -7.10 10.47 -15.06 -0.16 -7.26 16 22 H 0.09 2.74 8.06 -52.48 -0.42 2.32 16 23 C 0.01 0.18 5.50 -17.43 -0.10 0.09 16 24 N -0.93 -30.13 13.97 55.49 0.78 -29.35 16 25 Si 0.88 23.60 27.74 -169.99 -4.71 18.88 16 26 H -0.28 -7.59 7.11 56.52 0.40 -7.19 16 27 H -0.28 -7.15 6.52 56.52 0.37 -6.78 16 28 H -0.29 -7.80 7.11 56.52 0.40 -7.40 16 29 H 0.07 0.75 6.58 -51.93 -0.34 0.41 16 30 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.57 4.98 -51.93 -0.26 0.31 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.08 0.40 5.93 -51.93 -0.31 0.09 16 35 H 0.07 0.51 6.69 -51.93 -0.35 0.16 16 36 H 0.10 0.48 7.94 -51.93 -0.41 0.06 16 37 H 0.10 0.52 7.69 -51.93 -0.40 0.12 16 38 H 0.09 0.90 8.10 -51.93 -0.42 0.48 16 39 H 0.09 0.87 8.10 -51.93 -0.42 0.44 16 40 H 0.13 0.15 8.14 -51.93 -0.42 -0.27 16 41 H 0.14 0.23 8.14 -51.92 -0.42 -0.20 16 42 H 0.42 1.08 8.96 -34.47 -0.31 0.77 16 43 H 0.41 -0.03 8.96 -34.47 -0.31 -0.34 16 44 H 0.10 1.85 6.21 -51.93 -0.32 1.52 16 45 H 0.07 1.07 6.70 -51.93 -0.35 0.72 16 46 H 0.03 0.59 6.73 -51.93 -0.35 0.24 16 47 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 48 H 0.36 8.90 4.76 -40.82 -0.19 8.71 16 49 H 0.26 7.98 8.31 -40.82 -0.34 7.64 16 LS Contribution 390.47 15.07 5.88 5.88 Total: -1.00 -42.49 390.47 -9.36 -51.85 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -7.71 Total: 3.28 kcal Atomic # 6 Polarization: -4.01 SS G_CDS: -0.69 Total: -4.71 kcal Atomic # 7 Polarization: -59.78 SS G_CDS: 0.52 Total: -59.26 kcal Atomic # 8 Polarization: -31.60 SS G_CDS: -2.00 Total: -33.60 kcal Atomic # 14 Polarization: 23.60 SS G_CDS: -4.71 Total: 18.88 kcal Atomic # 16 Polarization: 18.31 SS G_CDS: -0.64 Total: 17.67 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -42.49 -9.36 -51.85 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133088175.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.877 kcal (2) G-P(sol) polarization free energy of solvation -42.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds