Wall clock time and date at job start Wed Apr 1 2020 05:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.45929 * 2 1 4 4 C 1.53041 * 109.44829 * 119.96493 * 2 1 3 5 5 C 1.53624 * 109.24488 * 58.52365 * 4 2 1 6 6 N 1.46923 * 108.54124 * 54.85414 * 5 4 2 7 7 C 1.34775 * 120.62915 * 126.37017 * 6 5 4 8 8 O 1.21282 * 120.00177 * 179.71750 * 7 6 5 9 9 C 1.50704 * 120.00083 * 359.72162 * 7 6 5 10 10 S 1.81397 * 109.47243 * 179.97438 * 9 7 6 11 11 O 1.42105 * 110.54189 * 68.37547 * 10 9 7 12 12 O 1.42099 * 110.54203 * 291.62286 * 10 9 7 13 13 N 1.65608 * 104.44917 * 179.97438 * 10 9 7 14 14 C 1.46494 * 119.99583 * 90.00089 * 13 10 9 15 15 C 1.46493 * 119.99916 * 269.72772 * 13 10 9 16 16 C 1.46923 * 118.73898 * 306.09662 * 6 5 4 17 17 C 1.53038 * 109.46017 * 240.02441 * 2 1 3 18 18 H 1.09003 * 109.49677 * 181.40957 * 17 2 1 19 19 C 1.53003 * 109.49643 * 61.30934 * 17 2 1 20 20 N 1.46500 * 109.46980 * 175.16283 * 19 17 2 21 21 C 1.36934 * 120.00215 * 180.02562 * 20 19 17 22 22 H 1.08007 * 119.99808 * 359.97438 * 21 20 19 23 23 C 1.38811 * 120.00163 * 180.02562 * 21 20 19 24 24 N 1.31616 * 120.00326 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99936 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47445 * 59.99401 * 25 23 21 27 27 H 1.48493 * 109.47230 * 179.97438 * 25 23 21 28 28 H 1.48500 * 109.47100 * 299.99578 * 25 23 21 29 29 H 1.08995 * 109.47099 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.47047 * 299.97693 * 1 2 3 31 31 H 1.09002 * 109.47183 * 59.97455 * 1 2 3 32 32 H 1.08999 * 109.49906 * 178.60200 * 4 2 1 33 33 H 1.09002 * 109.49476 * 298.69269 * 4 2 1 34 34 H 1.08997 * 109.73395 * 295.11957 * 5 4 2 35 35 H 1.09002 * 109.66320 * 174.55078 * 5 4 2 36 36 H 1.09001 * 109.46999 * 59.99413 * 9 7 6 37 37 H 1.09001 * 109.47056 * 299.99927 * 9 7 6 38 38 H 1.09002 * 109.47518 * 60.00180 * 14 13 10 39 39 H 1.09006 * 109.47343 * 180.02562 * 14 13 10 40 40 H 1.09003 * 109.47636 * 299.99529 * 14 13 10 41 41 H 1.09000 * 109.47297 * 90.00042 * 15 13 10 42 42 H 1.09002 * 109.47192 * 209.99968 * 15 13 10 43 43 H 1.08996 * 109.47342 * 329.99678 * 15 13 10 44 44 H 1.09002 * 109.58464 * 173.64524 * 16 6 5 45 45 H 1.08995 * 109.58780 * 293.93005 * 16 6 5 46 46 H 1.08992 * 109.47242 * 295.15997 * 19 17 2 47 47 H 1.08999 * 109.46747 * 55.16571 * 19 17 2 48 48 H 0.97000 * 120.00188 * 359.97438 * 20 19 17 49 49 H 0.96998 * 120.00594 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0396 -0.7208 1.2502 5 6 1.4940 -2.1568 1.2644 6 7 1.8619 -2.8089 0.0003 7 6 2.5148 -3.9880 0.0005 8 8 2.8084 -4.5187 -1.0498 9 6 2.8799 -4.6470 1.3057 10 16 3.7431 -6.2077 0.9744 11 8 5.0193 -5.9596 0.4008 12 8 2.8544 -7.1572 0.4017 13 7 4.0826 -6.8188 2.4757 14 6 3.1226 -7.7033 3.1406 15 6 5.3455 -6.4797 3.1361 16 6 1.4992 -2.1542 -1.2640 17 6 2.0398 -0.7209 -1.2499 18 1 3.1296 -0.7432 -1.2380 19 6 1.5571 0.0192 -2.4990 20 7 2.1395 -0.6026 -3.6907 21 6 1.8486 -0.1065 -4.9335 22 1 1.1895 0.7430 -5.0351 23 6 2.4001 -0.6961 -6.0627 24 7 3.2029 -1.7317 -5.9390 25 14 2.0038 -0.0188 -7.7579 26 1 2.4443 1.3969 -7.8408 27 1 2.7129 -0.8186 -8.7887 28 1 0.5394 -0.0960 -7.9918 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5135 0.8903 31 1 -0.3633 0.5142 -0.8898 32 1 3.1293 -0.7430 1.2386 33 1 1.6955 -0.1933 2.1398 34 1 0.4087 -2.1373 1.3632 35 1 1.9292 -2.7062 2.0993 36 1 1.9737 -4.8476 1.8774 37 1 3.5310 -3.9854 1.8771 38 1 2.9588 -8.5890 2.5266 39 1 3.5163 -8.0021 4.1122 40 1 2.1781 -7.1768 3.2781 41 1 5.2123 -5.5780 3.7338 42 1 5.6496 -7.3026 3.7830 43 1 6.1142 -6.3063 2.3831 44 1 1.9379 -2.7020 -2.0981 45 1 0.4144 -2.1368 -1.3684 46 1 0.4700 -0.0345 -2.5557 47 1 1.8671 1.0628 -2.4454 48 1 2.7318 -1.3654 -3.5995 49 1 3.5886 -2.1434 -6.7281 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133274209.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:24 Heat of formation + Delta-G solvation = -83.938663 kcal Electronic energy + Delta-G solvation = -30102.133192 eV Core-core repulsion = 25999.257415 eV Total energy + Delta-G solvation = -4102.875777 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -40.53269 -38.32013 -37.27461 -36.57592 -35.94437 -35.03921 -33.65939 -31.98807 -30.85867 -29.65910 -28.47968 -27.62079 -25.47511 -25.04782 -24.73965 -23.17911 -21.27240 -20.30446 -19.03529 -18.41388 -18.08612 -17.15661 -16.95599 -16.77538 -16.62321 -15.67697 -15.61619 -15.05688 -14.98834 -14.74168 -14.67847 -14.34598 -13.79512 -13.69280 -13.58233 -13.32116 -13.09390 -13.02771 -12.81460 -12.69138 -12.56661 -12.50117 -12.14970 -12.05818 -11.83110 -11.79515 -11.72711 -11.39952 -11.20128 -11.10920 -10.89275 -10.79803 -10.69026 -10.36832 -10.24031 -10.14608 -9.89607 -9.57474 -9.47720 -8.81562 -8.62624 -6.85617 -5.67101 -2.97708 -0.08563 2.35008 2.39815 2.81968 3.49369 3.53155 3.55482 3.66132 3.88473 3.96571 4.39447 4.50606 4.54414 4.64639 4.73702 4.75552 4.84436 4.91472 5.00538 5.09158 5.15357 5.16332 5.21027 5.39145 5.41429 5.46951 5.51996 5.57338 5.59004 5.65772 5.75020 5.80413 5.88570 5.96023 6.09357 6.10976 6.26910 6.28797 6.32274 6.47473 6.55373 6.75591 6.87362 7.23317 7.75509 7.90379 8.50122 9.60891 10.18374 10.52297 11.54929 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.012714 B = 0.002970 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2201.740112 B = 9423.956334 C =11065.075970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.086 4.086 3 H 0.076 0.924 4 C -0.130 4.130 5 C 0.101 3.899 6 N -0.597 5.597 7 C 0.538 3.462 8 O -0.525 6.525 9 C -0.673 4.673 10 S 2.643 3.357 11 O -0.933 6.933 12 O -0.934 6.934 13 N -1.013 6.013 14 C 0.088 3.912 15 C 0.079 3.921 16 C 0.116 3.884 17 C -0.103 4.103 18 H 0.075 0.925 19 C 0.161 3.839 20 N -0.734 5.734 21 C -0.245 4.245 22 H 0.069 0.931 23 C -0.012 4.012 24 N -0.928 5.928 25 Si 0.907 3.093 26 H -0.287 1.287 27 H -0.291 1.291 28 H -0.286 1.286 29 H 0.056 0.944 30 H 0.050 0.950 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.156 0.844 37 H 0.157 0.843 38 H 0.070 0.930 39 H 0.080 0.920 40 H 0.058 0.942 41 H 0.054 0.946 42 H 0.077 0.923 43 H 0.087 0.913 44 H 0.107 0.893 45 H 0.074 0.926 46 H 0.023 0.977 47 H 0.021 0.979 48 H 0.385 0.615 49 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.062 -5.621 28.906 29.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.105 4.105 3 H 0.094 0.906 4 C -0.168 4.168 5 C -0.022 4.022 6 N -0.329 5.329 7 C 0.322 3.678 8 O -0.401 6.401 9 C -0.800 4.800 10 S 2.730 3.270 11 O -0.923 6.923 12 O -0.924 6.924 13 N -0.852 5.852 14 C -0.057 4.057 15 C -0.066 4.066 16 C -0.005 4.005 17 C -0.123 4.123 18 H 0.094 0.906 19 C 0.033 3.967 20 N -0.378 5.378 21 C -0.376 4.376 22 H 0.087 0.913 23 C -0.208 4.208 24 N -0.576 5.576 25 Si 0.738 3.262 26 H -0.214 1.214 27 H -0.217 1.217 28 H -0.213 1.213 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.099 0.901 36 H 0.174 0.826 37 H 0.175 0.825 38 H 0.089 0.911 39 H 0.099 0.901 40 H 0.077 0.923 41 H 0.073 0.927 42 H 0.095 0.905 43 H 0.105 0.895 44 H 0.125 0.875 45 H 0.092 0.908 46 H 0.041 0.959 47 H 0.039 0.961 48 H 0.219 0.781 49 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -1.763 -6.196 27.413 28.160 hybrid contribution -0.333 0.798 -0.160 0.879 sum -2.096 -5.399 27.254 27.862 Atomic orbital electron populations 1.21997 0.95149 1.01979 1.01935 1.21086 0.96085 0.99514 0.93789 0.90609 1.22036 1.01253 0.94782 0.98728 1.21967 1.00707 0.93960 0.85599 1.48022 1.56187 1.20259 1.08436 1.19116 0.78539 0.81897 0.88205 1.90932 1.53775 1.63092 1.32345 1.31147 1.16722 1.25340 1.06826 1.04405 0.74968 0.75416 0.72186 1.93594 1.38751 1.85885 1.74021 1.93587 1.67988 1.56626 1.74212 1.57607 1.26985 1.61243 1.39414 1.21567 0.91288 0.94162 0.98682 1.21687 0.84887 1.01167 0.98856 1.21904 1.00355 0.93169 0.85118 1.21713 1.01058 0.94147 0.95369 0.90611 1.20667 0.96009 0.94716 0.85281 1.42421 1.57075 1.37563 1.00790 1.19129 1.23682 1.11036 0.83752 0.91319 1.24767 0.99984 0.98234 0.97825 1.69659 1.35293 1.23899 1.28731 0.86284 0.77608 0.77956 0.84382 1.21359 1.21686 1.21312 0.92480 0.93096 0.91629 0.91325 0.90668 0.90543 0.90083 0.82624 0.82497 0.91142 0.90121 0.92339 0.92735 0.90467 0.89484 0.87460 0.90807 0.95918 0.96112 0.78066 0.93340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 8.11 37.16 0.30 -1.32 16 2 C -0.09 -0.99 2.71 -90.58 -0.25 -1.24 16 3 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 4 C -0.13 -1.16 5.64 -26.39 -0.15 -1.31 16 5 C 0.10 0.89 5.90 -3.49 -0.02 0.87 16 6 N -0.60 -8.14 2.97 -172.51 -0.51 -8.65 16 7 C 0.54 8.24 7.72 -10.98 -0.08 8.16 16 8 O -0.52 -10.89 15.28 5.56 0.08 -10.81 16 9 C -0.67 -6.41 5.01 36.01 0.18 -6.23 16 10 S 2.64 33.29 4.57 -107.50 -0.49 32.80 16 11 O -0.93 -15.28 16.57 -57.55 -0.95 -16.23 16 12 O -0.93 -15.00 17.11 -57.55 -0.98 -15.99 16 13 N -1.01 -8.05 3.52 -129.21 -0.45 -8.51 16 14 C 0.09 0.50 10.26 59.84 0.61 1.12 16 15 C 0.08 0.46 10.61 59.84 0.63 1.10 16 16 C 0.12 1.93 5.04 -3.71 -0.02 1.92 16 17 C -0.10 -1.66 2.15 -90.50 -0.19 -1.85 16 18 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 19 C 0.16 3.21 5.19 -4.04 -0.02 3.19 16 20 N -0.73 -19.09 5.38 -59.91 -0.32 -19.41 16 21 C -0.24 -7.03 9.99 -15.06 -0.15 -7.18 16 22 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 23 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 24 N -0.93 -29.42 13.06 55.49 0.72 -28.70 16 25 Si 0.91 23.12 29.55 -169.99 -5.02 18.09 16 26 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 27 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 28 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 29 H 0.06 0.60 4.97 -51.93 -0.26 0.34 16 30 H 0.05 0.43 8.14 -51.92 -0.42 0.01 16 31 H 0.06 0.78 6.57 -51.93 -0.34 0.44 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.08 0.59 6.68 -51.93 -0.35 0.25 16 35 H 0.08 0.48 5.93 -51.93 -0.31 0.17 16 36 H 0.16 0.87 7.93 -51.92 -0.41 0.46 16 37 H 0.16 0.94 7.70 -51.92 -0.40 0.54 16 38 H 0.07 0.48 7.90 -51.93 -0.41 0.07 16 39 H 0.08 0.25 7.79 -51.93 -0.40 -0.15 16 40 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 41 H 0.05 0.19 8.14 -51.93 -0.42 -0.23 16 42 H 0.08 0.30 7.92 -51.93 -0.41 -0.11 16 43 H 0.09 0.64 6.91 -51.93 -0.36 0.28 16 44 H 0.11 2.28 6.21 -51.93 -0.32 1.96 16 45 H 0.07 1.17 6.70 -51.93 -0.35 0.82 16 46 H 0.02 0.45 6.72 -51.93 -0.35 0.10 16 47 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.39 10.79 6.89 -40.82 -0.28 10.50 16 49 H 0.26 7.90 8.31 -40.82 -0.34 7.57 16 LS Contribution 391.24 15.07 5.90 5.90 Total: -1.00 -40.17 391.24 -9.16 -49.34 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -7.88 Total: 5.38 kcal Atomic # 6 Polarization: -3.97 SS G_CDS: 0.75 Total: -3.22 kcal Atomic # 7 Polarization: -64.71 SS G_CDS: -0.56 Total: -65.27 kcal Atomic # 8 Polarization: -41.18 SS G_CDS: -1.85 Total: -43.03 kcal Atomic # 14 Polarization: 23.12 SS G_CDS: -5.02 Total: 18.09 kcal Atomic # 16 Polarization: 33.29 SS G_CDS: -0.49 Total: 32.80 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -40.17 -9.16 -49.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133274209.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.600 kcal (2) G-P(sol) polarization free energy of solvation -40.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds