Wall clock time and date at job start Wed Apr 1 2020 05:08:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.45929 * 2 1 4 4 C 1.53041 * 109.44829 * 119.96493 * 2 1 3 5 5 C 1.53624 * 109.24488 * 58.52365 * 4 2 1 6 6 N 1.46923 * 108.54124 * 54.85414 * 5 4 2 7 7 C 1.34775 * 120.62915 * 126.37017 * 6 5 4 8 8 O 1.21282 * 120.00177 * 179.71750 * 7 6 5 9 9 C 1.50704 * 120.00083 * 359.72162 * 7 6 5 10 10 S 1.81397 * 109.47243 * 179.97438 * 9 7 6 11 11 O 1.42105 * 110.54189 * 68.37547 * 10 9 7 12 12 O 1.42099 * 110.54203 * 291.62286 * 10 9 7 13 13 N 1.65608 * 104.44917 * 179.97438 * 10 9 7 14 14 C 1.46494 * 119.99583 * 90.00089 * 13 10 9 15 15 C 1.46493 * 119.99916 * 269.72772 * 13 10 9 16 16 C 1.46923 * 118.73898 * 306.09662 * 6 5 4 17 17 C 1.53038 * 109.46017 * 240.02441 * 2 1 3 18 18 H 1.09003 * 109.49677 * 181.40957 * 17 2 1 19 19 C 1.53003 * 109.49643 * 61.30934 * 17 2 1 20 20 N 1.46500 * 109.46980 * 175.16283 * 19 17 2 21 21 C 1.36934 * 120.00215 * 180.02562 * 20 19 17 22 22 H 1.08007 * 119.99808 * 359.97438 * 21 20 19 23 23 C 1.38811 * 120.00163 * 180.02562 * 21 20 19 24 24 N 1.31616 * 120.00326 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99936 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47445 * 59.99401 * 25 23 21 27 27 H 1.48493 * 109.47230 * 179.97438 * 25 23 21 28 28 H 1.48500 * 109.47100 * 299.99578 * 25 23 21 29 29 H 1.08995 * 109.47099 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.47047 * 299.97693 * 1 2 3 31 31 H 1.09002 * 109.47183 * 59.97455 * 1 2 3 32 32 H 1.08999 * 109.49906 * 178.60200 * 4 2 1 33 33 H 1.09002 * 109.49476 * 298.69269 * 4 2 1 34 34 H 1.08997 * 109.73395 * 295.11957 * 5 4 2 35 35 H 1.09002 * 109.66320 * 174.55078 * 5 4 2 36 36 H 1.09001 * 109.46999 * 59.99413 * 9 7 6 37 37 H 1.09001 * 109.47056 * 299.99927 * 9 7 6 38 38 H 1.09002 * 109.47518 * 60.00180 * 14 13 10 39 39 H 1.09006 * 109.47343 * 180.02562 * 14 13 10 40 40 H 1.09003 * 109.47636 * 299.99529 * 14 13 10 41 41 H 1.09000 * 109.47297 * 90.00042 * 15 13 10 42 42 H 1.09002 * 109.47192 * 209.99968 * 15 13 10 43 43 H 1.08996 * 109.47342 * 329.99678 * 15 13 10 44 44 H 1.09002 * 109.58464 * 173.64524 * 16 6 5 45 45 H 1.08995 * 109.58780 * 293.93005 * 16 6 5 46 46 H 1.08992 * 109.47242 * 295.15997 * 19 17 2 47 47 H 1.08999 * 109.46747 * 55.16571 * 19 17 2 48 48 H 0.97000 * 120.00188 * 359.97438 * 20 19 17 49 49 H 0.96998 * 120.00594 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0396 -0.7208 1.2502 5 6 1.4940 -2.1568 1.2644 6 7 1.8619 -2.8089 0.0003 7 6 2.5148 -3.9880 0.0005 8 8 2.8084 -4.5187 -1.0498 9 6 2.8799 -4.6470 1.3057 10 16 3.7431 -6.2077 0.9744 11 8 5.0193 -5.9596 0.4008 12 8 2.8544 -7.1572 0.4017 13 7 4.0826 -6.8188 2.4757 14 6 3.1226 -7.7033 3.1406 15 6 5.3455 -6.4797 3.1361 16 6 1.4992 -2.1542 -1.2640 17 6 2.0398 -0.7209 -1.2499 18 1 3.1296 -0.7432 -1.2380 19 6 1.5571 0.0192 -2.4990 20 7 2.1395 -0.6026 -3.6907 21 6 1.8486 -0.1065 -4.9335 22 1 1.1895 0.7430 -5.0351 23 6 2.4001 -0.6961 -6.0627 24 7 3.2029 -1.7317 -5.9390 25 14 2.0038 -0.0188 -7.7579 26 1 2.4443 1.3969 -7.8408 27 1 2.7129 -0.8186 -8.7887 28 1 0.5394 -0.0960 -7.9918 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5135 0.8903 31 1 -0.3633 0.5142 -0.8898 32 1 3.1293 -0.7430 1.2386 33 1 1.6955 -0.1933 2.1398 34 1 0.4087 -2.1373 1.3632 35 1 1.9292 -2.7062 2.0993 36 1 1.9737 -4.8476 1.8774 37 1 3.5310 -3.9854 1.8771 38 1 2.9588 -8.5890 2.5266 39 1 3.5163 -8.0021 4.1122 40 1 2.1781 -7.1768 3.2781 41 1 5.2123 -5.5780 3.7338 42 1 5.6496 -7.3026 3.7830 43 1 6.1142 -6.3063 2.3831 44 1 1.9379 -2.7020 -2.0981 45 1 0.4144 -2.1368 -1.3684 46 1 0.4700 -0.0345 -2.5557 47 1 1.8671 1.0628 -2.4454 48 1 2.7318 -1.3654 -3.5995 49 1 3.5886 -2.1434 -6.7281 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133274209.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:23 Heat of formation + Delta-G solvation = -117.488535 kcal Electronic energy + Delta-G solvation = -30103.588023 eV Core-core repulsion = 25999.257415 eV Total energy + Delta-G solvation = -4104.330608 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.66080 -39.52678 -38.34852 -37.27516 -36.89603 -36.67598 -35.06625 -33.53348 -32.15392 -31.02110 -28.90457 -28.67506 -27.08670 -25.83382 -25.52368 -24.93334 -22.62202 -21.48161 -19.96577 -19.56996 -19.00948 -18.95540 -17.97832 -17.89086 -17.50320 -16.84122 -16.61550 -16.61468 -16.10657 -15.72783 -15.47669 -15.35878 -15.26664 -15.08624 -14.69733 -14.44014 -14.27195 -14.03740 -13.81413 -13.74058 -13.58650 -13.25995 -13.18535 -13.07598 -13.05342 -12.84547 -12.64536 -12.54948 -12.51082 -12.49879 -12.20821 -12.17727 -11.97018 -11.92153 -11.77674 -11.55060 -11.27421 -11.11160 -10.93618 -10.02061 -9.74583 -9.02966 -7.95812 -5.27024 -0.99620 1.23699 1.43045 1.47795 1.54309 1.55158 1.85050 2.53982 2.77175 3.04307 3.09255 3.36745 3.65344 3.77986 3.80426 3.86244 3.87707 4.04971 4.09124 4.15648 4.28511 4.37536 4.50749 4.54982 4.57188 4.58469 4.69436 4.75533 4.80108 4.80964 4.89886 4.97939 5.01501 5.03830 5.05599 5.08401 5.17213 5.23414 5.29039 5.36973 5.42538 5.46601 5.58753 5.60547 6.15038 6.24118 6.79976 7.29330 8.06373 8.27841 9.27422 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.012714 B = 0.002970 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2201.740112 B = 9423.956334 C =11065.075970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.081 4.081 3 H 0.080 0.920 4 C -0.125 4.125 5 C 0.088 3.912 6 N -0.591 5.591 7 C 0.519 3.481 8 O -0.597 6.597 9 C -0.647 4.647 10 S 2.635 3.365 11 O -0.988 6.988 12 O -0.985 6.985 13 N -1.002 6.002 14 C 0.076 3.924 15 C 0.069 3.931 16 C 0.121 3.879 17 C -0.092 4.092 18 H 0.050 0.950 19 C 0.159 3.841 20 N -0.750 5.750 21 C -0.247 4.247 22 H 0.080 0.920 23 C -0.081 4.081 24 N -0.973 5.973 25 Si 0.979 3.021 26 H -0.274 1.274 27 H -0.298 1.298 28 H -0.275 1.275 29 H 0.056 0.944 30 H 0.083 0.917 31 H 0.045 0.955 32 H 0.063 0.937 33 H 0.117 0.883 34 H 0.098 0.902 35 H 0.126 0.874 36 H 0.208 0.792 37 H 0.204 0.796 38 H 0.049 0.951 39 H 0.113 0.887 40 H 0.083 0.917 41 H 0.089 0.911 42 H 0.100 0.900 43 H 0.062 0.938 44 H 0.048 0.952 45 H 0.080 0.920 46 H 0.031 0.969 47 H 0.025 0.975 48 H 0.369 0.631 49 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.835 -3.700 33.663 34.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.100 4.100 3 H 0.099 0.901 4 C -0.163 4.163 5 C -0.033 4.033 6 N -0.321 5.321 7 C 0.306 3.694 8 O -0.479 6.479 9 C -0.777 4.777 10 S 2.727 3.273 11 O -0.978 6.978 12 O -0.975 6.975 13 N -0.843 5.843 14 C -0.068 4.068 15 C -0.075 4.075 16 C -0.001 4.001 17 C -0.111 4.111 18 H 0.069 0.931 19 C 0.033 3.967 20 N -0.393 5.393 21 C -0.379 4.379 22 H 0.098 0.902 23 C -0.273 4.273 24 N -0.624 5.624 25 Si 0.807 3.193 26 H -0.199 1.199 27 H -0.225 1.225 28 H -0.201 1.201 29 H 0.075 0.925 30 H 0.102 0.898 31 H 0.064 0.936 32 H 0.082 0.918 33 H 0.136 0.864 34 H 0.116 0.884 35 H 0.144 0.856 36 H 0.225 0.775 37 H 0.221 0.779 38 H 0.068 0.932 39 H 0.132 0.868 40 H 0.101 0.899 41 H 0.107 0.893 42 H 0.118 0.882 43 H 0.081 0.919 44 H 0.067 0.933 45 H 0.098 0.902 46 H 0.049 0.951 47 H 0.042 0.958 48 H 0.201 0.799 49 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -3.564 -4.242 32.241 32.713 hybrid contribution 0.165 0.267 -1.508 1.540 sum -3.400 -3.974 30.733 31.175 Atomic orbital electron populations 1.21973 0.93934 1.02186 1.02619 1.21096 0.96998 0.99418 0.92518 0.90124 1.22060 1.01023 0.94721 0.98461 1.22524 1.02580 0.94084 0.84075 1.48127 1.55159 1.19770 1.09072 1.20089 0.77772 0.82093 0.89399 1.90914 1.56491 1.65008 1.35534 1.30952 1.19388 1.23036 1.04372 1.04056 0.73837 0.76196 0.73231 1.93525 1.41256 1.86799 1.76224 1.93518 1.68691 1.58992 1.76310 1.57204 1.28137 1.61192 1.37806 1.21876 0.92150 0.93399 0.99356 1.21966 0.83269 1.03755 0.98538 1.21526 1.00082 0.93026 0.85510 1.21577 0.99450 0.93938 0.96169 0.93112 1.20882 0.96048 0.94838 0.84978 1.42715 1.57103 1.37354 1.02131 1.19635 1.22620 1.10641 0.84970 0.90174 1.25703 1.00555 0.98923 1.02131 1.69871 1.37310 1.25918 1.29287 0.85137 0.77676 0.77492 0.79001 1.19945 1.22459 1.20081 0.92479 0.89797 0.93598 0.91834 0.86431 0.88360 0.85646 0.77464 0.77870 0.93235 0.86820 0.89885 0.89292 0.88183 0.91901 0.93340 0.90161 0.95071 0.95750 0.79926 0.94136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 8.11 71.98 0.58 -2.06 16 2 C -0.08 -1.65 2.71 -10.77 -0.03 -1.68 16 3 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 4 C -0.12 -1.61 5.64 30.82 0.17 -1.44 16 5 C 0.09 1.11 5.90 86.51 0.51 1.62 16 6 N -0.59 -15.37 2.97 -818.08 -2.43 -17.80 16 7 C 0.52 15.87 7.72 87.66 0.68 16.54 16 8 O -0.60 -26.88 15.28 -3.04 -0.05 -26.92 16 9 C -0.65 -10.36 5.01 71.24 0.36 -10.00 16 10 S 2.63 66.98 4.57 -56.49 -0.26 66.72 16 11 O -0.99 -34.58 16.57 -127.64 -2.11 -36.69 16 12 O -0.99 -33.41 17.11 -127.64 -2.18 -35.59 16 13 N -1.00 -13.89 3.52 -562.71 -1.98 -15.87 16 14 C 0.08 0.66 10.26 127.77 1.31 1.97 16 15 C 0.07 0.63 10.61 127.77 1.36 1.99 16 16 C 0.12 4.22 5.04 86.36 0.44 4.66 16 17 C -0.09 -2.98 2.15 -10.72 -0.02 -3.00 16 18 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 19 C 0.16 6.48 5.19 86.38 0.45 6.92 16 20 N -0.75 -41.00 5.38 -343.45 -1.85 -42.84 16 21 C -0.25 -14.58 9.99 84.03 0.84 -13.74 16 22 H 0.08 4.44 7.83 -2.91 -0.02 4.42 16 23 C -0.08 -4.98 5.50 84.86 0.47 -4.52 16 24 N -0.97 -64.97 13.06 21.65 0.28 -64.69 16 25 Si 0.98 48.78 29.55 68.60 2.03 50.81 16 26 H -0.27 -12.92 7.11 99.48 0.71 -12.21 16 27 H -0.30 -15.09 7.11 99.48 0.71 -14.38 16 28 H -0.27 -13.05 7.11 99.48 0.71 -12.35 16 29 H 0.06 1.01 4.97 -2.39 -0.01 0.99 16 30 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 31 H 0.04 0.99 6.57 -2.39 -0.02 0.97 16 32 H 0.06 0.93 8.14 -2.39 -0.02 0.92 16 33 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.10 0.92 6.68 -2.39 -0.02 0.91 16 35 H 0.13 0.53 5.93 -2.39 -0.01 0.51 16 36 H 0.21 1.12 7.93 -2.39 -0.02 1.10 16 37 H 0.20 1.34 7.70 -2.39 -0.02 1.32 16 38 H 0.05 0.64 7.90 -2.39 -0.02 0.62 16 39 H 0.11 0.25 7.79 -2.38 -0.02 0.23 16 40 H 0.08 0.32 8.14 -2.39 -0.02 0.30 16 41 H 0.09 0.23 8.14 -2.39 -0.02 0.21 16 42 H 0.10 0.47 7.92 -2.39 -0.02 0.45 16 43 H 0.06 0.91 6.91 -2.39 -0.02 0.89 16 44 H 0.05 2.27 6.21 -2.39 -0.01 2.26 16 45 H 0.08 2.61 6.70 -2.39 -0.02 2.60 16 46 H 0.03 1.24 6.72 -2.39 -0.02 1.22 16 47 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 48 H 0.37 22.31 6.89 -92.71 -0.64 21.67 16 49 H 0.25 16.24 8.31 -92.71 -0.77 15.47 16 Total: -1.00 -100.36 391.24 -1.12 -101.48 By element: Atomic # 1 Polarization: 23.81 SS G_CDS: 0.32 Total: 24.13 kcal Atomic # 6 Polarization: -9.84 SS G_CDS: 7.11 Total: -2.73 kcal Atomic # 7 Polarization: -135.23 SS G_CDS: -5.97 Total: -141.20 kcal Atomic # 8 Polarization: -94.86 SS G_CDS: -4.34 Total: -99.21 kcal Atomic # 14 Polarization: 48.78 SS G_CDS: 2.03 Total: 50.81 kcal Atomic # 16 Polarization: 66.98 SS G_CDS: -0.26 Total: 66.72 kcal Total: -100.36 -1.12 -101.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133274209.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.007 kcal (2) G-P(sol) polarization free energy of solvation -100.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -101.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds