Wall clock time and date at job start Wed Apr 1 2020 05:24:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47074 * 2 1 4 4 C 1.53000 * 109.47371 * 240.00125 * 2 1 3 5 5 C 1.52991 * 109.47070 * 175.00161 * 4 2 1 6 6 H 1.09006 * 109.47161 * 304.99504 * 5 4 2 7 7 C 1.53002 * 109.46858 * 185.00139 * 5 4 2 8 8 N 1.46500 * 109.47419 * 64.99928 * 5 4 2 9 9 C 1.34777 * 119.99746 * 204.99658 * 8 5 4 10 10 O 1.21282 * 120.00345 * 0.02562 * 9 8 5 11 11 C 1.50699 * 119.99614 * 179.97438 * 9 8 5 12 12 N 1.46906 * 109.47140 * 180.02562 * 11 9 8 13 13 C 1.46469 * 110.99972 * 295.85541 * 12 11 9 14 14 C 1.53180 * 109.89707 * 162.99819 * 13 12 11 15 15 S 1.81818 * 108.67719 * 62.63815 * 14 13 12 16 16 O 1.42105 * 108.69972 * 193.42253 * 15 14 13 17 17 O 1.42101 * 108.82731 * 61.98786 * 15 14 13 18 18 C 1.81813 * 101.02053 * 307.67932 * 15 14 13 19 19 C 1.46471 * 110.99840 * 170.00048 * 12 11 9 20 20 N 1.46505 * 109.46843 * 119.99942 * 2 1 3 21 21 C 1.36934 * 119.99996 * 274.99949 * 20 2 1 22 22 H 1.08005 * 120.00127 * 0.02562 * 21 20 2 23 23 C 1.38814 * 119.99717 * 180.02562 * 21 20 2 24 24 N 1.31616 * 120.00255 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 119.99647 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47282 * 89.99855 * 25 23 21 27 27 H 1.48508 * 109.46590 * 209.99595 * 25 23 21 28 28 H 1.48500 * 109.47285 * 329.99181 * 25 23 21 29 29 H 1.08997 * 109.47074 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47073 * 300.00034 * 1 2 3 31 31 H 1.08997 * 109.46874 * 59.99827 * 1 2 3 32 32 H 1.08996 * 109.47038 * 54.99605 * 4 2 1 33 33 H 1.09004 * 109.46484 * 295.00214 * 4 2 1 34 34 H 1.08998 * 109.47643 * 60.00194 * 7 5 4 35 35 H 1.09008 * 109.47020 * 179.97438 * 7 5 4 36 36 H 1.08994 * 109.47100 * 299.99534 * 7 5 4 37 37 H 0.96996 * 119.99985 * 25.00228 * 8 5 4 38 38 H 1.09004 * 109.47103 * 60.00237 * 11 9 8 39 39 H 1.09000 * 109.47247 * 300.00115 * 11 9 8 40 40 H 1.09000 * 109.40054 * 283.12889 * 13 12 11 41 41 H 1.08998 * 109.39889 * 42.87158 * 13 12 11 42 42 H 1.08991 * 109.60676 * 302.87949 * 14 13 12 43 43 H 1.09000 * 109.60052 * 182.39022 * 14 13 12 44 44 H 1.08991 * 109.60535 * 292.56313 * 18 15 14 45 45 H 1.09004 * 109.60115 * 172.07361 * 18 15 14 46 46 H 1.09006 * 109.40183 * 317.12967 * 19 12 11 47 47 H 1.08995 * 109.40223 * 76.86816 * 19 12 11 48 48 H 0.97000 * 119.99892 * 95.00709 * 20 2 1 49 49 H 0.97003 * 119.99856 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5648 -0.6132 -1.3136 6 1 3.8571 0.4359 -1.2677 7 6 4.0645 -1.2249 -2.6240 8 7 4.1537 -1.3342 -0.1823 9 6 5.3748 -0.9910 0.2734 10 8 5.9859 -0.0851 -0.2528 11 6 5.9802 -1.7322 1.4374 12 7 7.3044 -1.1722 1.7392 13 6 8.2297 -1.3818 0.6232 14 6 9.4371 -0.4499 0.7651 15 16 10.3226 -0.8733 2.2956 16 8 11.2424 0.1684 2.5929 17 8 10.7932 -2.2106 2.1982 18 6 8.9682 -0.8185 3.5073 19 6 7.8226 -1.7016 3.0027 20 7 2.0183 -0.6906 1.1962 21 6 2.1491 -0.0075 2.3758 22 1 1.8918 1.0403 2.4244 23 6 2.6122 -0.6618 3.5091 24 7 2.9252 -1.9388 3.4500 25 14 2.7899 0.2700 5.1184 26 1 1.5223 0.1778 5.8863 27 1 3.8949 -0.3228 5.9140 28 1 3.0940 1.6954 4.8341 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.6054 -0.2617 -2.1369 33 1 1.7517 -1.7715 -1.2055 34 1 3.6265 -0.6886 -3.4657 35 1 5.1509 -1.1476 -2.6701 36 1 3.7723 -2.2740 -2.6699 37 1 3.6648 -2.0584 0.2387 38 1 6.0809 -2.7875 1.1835 39 1 5.3349 -1.6283 2.3097 40 1 8.5695 -2.4174 0.6242 41 1 7.7180 -1.1708 -0.3158 42 1 9.0972 0.5845 0.8136 43 1 10.1014 -0.5795 -0.0893 44 1 8.6175 0.2075 3.6177 45 1 9.3219 -1.1920 4.4683 46 1 7.0235 -1.7165 3.7440 47 1 8.1892 -2.7162 2.8471 48 1 2.2491 -1.6318 1.1527 49 1 3.2485 -2.3961 4.2420 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001146313602.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:24:05 Heat of formation + Delta-G solvation = -103.019979 kcal Electronic energy + Delta-G solvation = -30817.634412 eV Core-core repulsion = 26713.931207 eV Total energy + Delta-G solvation = -4103.703205 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.97091 -39.19155 -38.15200 -37.78215 -37.12800 -35.68351 -34.01049 -32.81603 -32.64911 -31.59585 -30.18086 -27.60205 -27.13811 -25.53120 -25.08588 -22.89024 -22.05802 -21.62636 -20.91536 -19.80150 -19.06784 -18.07398 -17.89088 -17.30045 -17.21829 -16.83281 -16.68019 -16.49455 -16.00262 -15.75240 -15.46569 -15.42239 -15.29307 -14.55116 -14.34883 -14.16166 -13.85142 -13.75723 -13.53881 -13.42975 -13.29277 -13.24898 -13.15417 -13.14842 -12.97893 -12.85682 -12.77052 -12.74181 -12.55313 -12.54027 -12.23960 -12.11010 -11.72699 -11.66816 -11.56071 -11.36774 -11.11119 -10.84233 -10.51279 -9.72545 -9.41671 -8.78197 -7.82063 -5.03821 -0.94818 1.47537 1.52472 1.56316 1.67677 1.90489 2.26105 2.63165 2.65566 2.82997 3.08022 3.51314 3.52958 3.69712 3.82056 3.94862 3.97159 4.08153 4.12067 4.21305 4.25490 4.29863 4.39021 4.44166 4.61062 4.67288 4.73431 4.79386 4.83347 4.86450 4.87782 4.90570 4.96872 4.98870 5.11709 5.17205 5.19323 5.41049 5.45097 5.63640 5.66394 5.70350 5.89682 5.98709 6.41202 6.84807 7.50378 7.55146 8.21466 8.50202 9.39011 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011356 B = 0.003922 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2465.101861 B = 7136.967300 C = 9006.549024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.163 3.837 3 H 0.027 0.973 4 C -0.120 4.120 5 C 0.149 3.851 6 H 0.055 0.945 7 C -0.150 4.150 8 N -0.694 5.694 9 C 0.523 3.477 10 O -0.574 6.574 11 C 0.044 3.956 12 N -0.551 5.551 13 C 0.058 3.942 14 C -0.577 4.577 15 S 2.429 3.571 16 O -0.980 6.980 17 O -0.970 6.970 18 C -0.586 4.586 19 C 0.060 3.940 20 N -0.718 5.718 21 C -0.224 4.224 22 H 0.052 0.948 23 C -0.046 4.046 24 N -0.942 5.942 25 Si 0.938 3.062 26 H -0.300 1.300 27 H -0.292 1.292 28 H -0.291 1.291 29 H 0.047 0.953 30 H 0.027 0.973 31 H 0.067 0.933 32 H 0.104 0.896 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.041 0.959 36 H 0.067 0.933 37 H 0.404 0.596 38 H 0.080 0.920 39 H 0.112 0.888 40 H 0.064 0.936 41 H 0.102 0.898 42 H 0.144 0.856 43 H 0.156 0.844 44 H 0.148 0.852 45 H 0.160 0.840 46 H 0.097 0.903 47 H 0.072 0.928 48 H 0.376 0.624 49 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.974 -2.711 -8.977 11.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.055 3.945 3 H 0.046 0.954 4 C -0.158 4.158 5 C 0.044 3.956 6 H 0.073 0.927 7 C -0.209 4.209 8 N -0.346 5.346 9 C 0.309 3.691 10 O -0.455 6.455 11 C -0.086 4.086 12 N -0.277 5.277 13 C -0.071 4.071 14 C -0.709 4.709 15 S 2.615 3.385 16 O -0.977 6.977 17 O -0.967 6.967 18 C -0.717 4.717 19 C -0.068 4.068 20 N -0.361 5.361 21 C -0.356 4.356 22 H 0.070 0.930 23 C -0.239 4.239 24 N -0.593 5.593 25 Si 0.771 3.229 26 H -0.228 1.228 27 H -0.218 1.218 28 H -0.217 1.217 29 H 0.067 0.933 30 H 0.046 0.954 31 H 0.086 0.914 32 H 0.122 0.878 33 H 0.094 0.906 34 H 0.099 0.901 35 H 0.060 0.940 36 H 0.086 0.914 37 H 0.241 0.759 38 H 0.098 0.902 39 H 0.130 0.870 40 H 0.082 0.918 41 H 0.120 0.880 42 H 0.162 0.838 43 H 0.174 0.826 44 H 0.166 0.834 45 H 0.178 0.822 46 H 0.115 0.885 47 H 0.090 0.910 48 H 0.211 0.789 49 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 7.282 -1.644 -9.047 11.729 hybrid contribution -0.986 -0.397 1.496 1.835 sum 6.295 -2.041 -7.551 10.041 Atomic orbital electron populations 1.22288 0.97959 1.00960 1.00295 1.20465 0.92498 0.94878 0.86695 0.95442 1.22111 0.93229 1.02000 0.98487 1.20865 0.93097 0.95912 0.85717 0.92683 1.22090 1.00689 1.01728 0.96352 1.45997 1.17425 1.37383 1.33791 1.20456 0.81761 0.83344 0.83492 1.90565 1.62610 1.31814 1.60521 1.21911 0.90350 0.97219 0.99124 1.60720 1.02560 1.61424 1.02953 1.21935 0.91655 0.96749 0.96745 1.30051 1.09252 1.10902 1.20683 1.07514 0.77278 0.73979 0.79716 1.93535 1.61030 1.59027 1.84158 1.93533 1.79485 1.37278 1.86427 1.30139 1.13931 1.10887 1.16763 1.21844 0.97354 0.95840 0.91773 1.42492 1.78089 1.10013 1.05524 1.19276 1.34323 0.93342 0.88698 0.92980 1.24893 1.03480 0.96636 0.98931 1.69645 1.52610 1.08452 1.28619 0.85700 0.76604 0.77986 0.82657 1.22778 1.21798 1.21736 0.93343 0.95352 0.91433 0.87754 0.90590 0.90052 0.93980 0.91446 0.75889 0.90211 0.87042 0.91826 0.88006 0.83778 0.82561 0.83430 0.82223 0.88495 0.91040 0.78871 0.94095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.77 9.49 71.98 0.68 -4.09 16 2 C 0.16 5.51 2.89 44.99 0.13 5.64 16 3 H 0.03 1.04 8.08 -2.39 -0.02 1.02 16 4 C -0.12 -3.02 4.43 30.59 0.14 -2.88 16 5 C 0.15 4.16 2.57 44.99 0.12 4.28 16 6 H 0.05 1.86 7.58 -2.38 -0.02 1.84 16 7 C -0.15 -3.31 9.48 71.98 0.68 -2.62 16 8 N -0.69 -21.88 3.80 -442.53 -1.68 -23.56 16 9 C 0.52 18.17 7.34 87.66 0.64 18.81 16 10 O -0.57 -22.39 13.99 -3.04 -0.04 -22.44 16 11 C 0.04 1.39 5.45 85.56 0.47 1.86 16 12 N -0.55 -15.59 4.19 -902.33 -3.78 -19.37 16 13 C 0.06 1.43 4.95 86.45 0.43 1.85 16 14 C -0.58 -12.07 6.58 72.04 0.47 -11.60 16 15 S 2.43 54.33 5.34 -56.49 -0.30 54.03 16 16 O -0.98 -28.25 18.11 -127.39 -2.31 -30.56 16 17 O -0.97 -26.58 18.10 -127.39 -2.31 -28.89 16 18 C -0.59 -11.83 6.58 72.04 0.47 -11.36 16 19 C 0.06 1.45 5.41 86.45 0.47 1.92 16 20 N -0.72 -29.96 3.84 -322.92 -1.24 -31.20 16 21 C -0.22 -11.08 9.93 84.03 0.83 -10.25 16 22 H 0.05 2.69 7.83 -2.91 -0.02 2.67 16 23 C -0.05 -2.29 5.50 84.86 0.47 -1.82 16 24 N -0.94 -46.94 12.78 21.65 0.28 -46.67 16 25 Si 0.94 43.06 29.55 68.60 2.03 45.09 16 26 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 27 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 28 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 29 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.03 0.98 8.14 -2.39 -0.02 0.97 16 31 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16 34 H 0.08 1.44 8.14 -2.39 -0.02 1.43 16 35 H 0.04 1.05 8.14 -2.38 -0.02 1.03 16 36 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.40 12.89 6.51 -92.71 -0.60 12.28 16 38 H 0.08 2.13 8.14 -2.38 -0.02 2.11 16 39 H 0.11 4.19 7.56 -2.39 -0.02 4.17 16 40 H 0.06 1.36 7.93 -2.39 -0.02 1.35 16 41 H 0.10 2.85 5.61 -2.39 -0.01 2.84 16 42 H 0.14 3.09 8.14 -2.39 -0.02 3.07 16 43 H 0.16 2.49 8.14 -2.39 -0.02 2.47 16 44 H 0.15 2.91 8.14 -2.39 -0.02 2.89 16 45 H 0.16 2.44 8.14 -2.39 -0.02 2.42 16 46 H 0.10 2.50 7.77 -2.38 -0.02 2.48 16 47 H 0.07 1.50 7.93 -2.39 -0.02 1.48 16 48 H 0.38 15.86 5.70 -92.71 -0.53 15.33 16 49 H 0.25 12.38 8.31 -92.71 -0.77 11.61 16 Total: -1.00 -67.42 398.28 -3.54 -70.96 By element: Atomic # 1 Polarization: 43.05 SS G_CDS: -0.18 Total: 42.86 kcal Atomic # 6 Polarization: -16.26 SS G_CDS: 6.00 Total: -10.26 kcal Atomic # 7 Polarization: -114.37 SS G_CDS: -6.42 Total: -120.79 kcal Atomic # 8 Polarization: -77.23 SS G_CDS: -4.66 Total: -81.88 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Atomic # 16 Polarization: 54.33 SS G_CDS: -0.30 Total: 54.03 kcal Total: -67.42 -3.54 -70.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146313602.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.064 kcal (2) G-P(sol) polarization free energy of solvation -67.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds