Wall clock time and date at job start Wed Apr 1 2020 05:21:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46888 * 2 1 4 4 C 1.53002 * 109.47642 * 240.00332 * 2 1 3 5 5 C 1.52991 * 109.47433 * 174.99838 * 4 2 1 6 6 C 1.53000 * 109.47071 * 179.97438 * 5 4 2 7 7 C 1.53001 * 109.47050 * 179.97438 * 6 5 4 8 8 N 1.46505 * 109.47068 * 180.02562 * 7 6 5 9 9 C 1.36939 * 119.99971 * 180.02562 * 8 7 6 10 10 H 1.08000 * 119.99803 * 0.02562 * 9 8 7 11 11 C 1.38809 * 119.99961 * 179.97438 * 9 8 7 12 12 N 1.31621 * 120.00055 * 179.97438 * 11 9 8 13 13 Si 1.86799 * 119.99934 * 0.02562 * 11 9 8 14 14 H 1.48500 * 109.47368 * 89.99621 * 13 11 9 15 15 H 1.48500 * 109.47242 * 209.99837 * 13 11 9 16 16 H 1.48504 * 109.47302 * 329.99480 * 13 11 9 17 17 N 1.46503 * 109.47416 * 119.99919 * 2 1 3 18 18 C 1.34776 * 119.99922 * 275.00387 * 17 2 1 19 19 O 1.21281 * 120.00161 * 0.02562 * 18 17 2 20 20 C 1.50700 * 119.99755 * 179.97438 * 18 17 2 21 21 N 1.46505 * 109.46909 * 179.97438 * 20 18 17 22 22 C 1.47068 * 126.29884 * 85.00553 * 21 20 18 23 23 C 1.54066 * 110.04916 * 208.96145 * 22 21 20 24 24 C 1.55602 * 104.29476 * 314.83004 * 23 22 21 25 25 S 1.66842 * 126.22232 * 264.93402 * 21 20 18 26 26 O 1.42107 * 105.14140 * 61.13608 * 25 21 20 27 27 O 1.42098 * 105.27888 * 291.49366 * 25 21 20 28 28 H 1.08998 * 109.47159 * 299.99622 * 1 2 3 29 29 H 1.09000 * 109.46859 * 60.00042 * 1 2 3 30 30 H 1.09002 * 109.46888 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46719 * 294.99943 * 4 2 1 32 32 H 1.08998 * 109.46677 * 54.99206 * 4 2 1 33 33 H 1.09001 * 109.47253 * 299.99778 * 5 4 2 34 34 H 1.09007 * 109.47282 * 59.99594 * 5 4 2 35 35 H 1.08989 * 109.47597 * 300.00001 * 6 5 4 36 36 H 1.09003 * 109.47132 * 60.00359 * 6 5 4 37 37 H 1.09001 * 109.47586 * 300.00363 * 7 6 5 38 38 H 1.09003 * 109.46750 * 60.00900 * 7 6 5 39 39 H 0.96996 * 119.99678 * 0.02562 * 8 7 6 40 40 H 0.97002 * 120.00028 * 180.02562 * 12 11 9 41 41 H 0.96999 * 120.00041 * 94.99767 * 17 2 1 42 42 H 1.08999 * 109.46956 * 60.00354 * 20 18 17 43 43 H 1.08996 * 109.47713 * 300.00016 * 20 18 17 44 44 H 1.09002 * 109.35873 * 88.81413 * 22 21 20 45 45 H 1.09000 * 109.35301 * 329.10530 * 22 21 20 46 46 H 1.08992 * 110.46854 * 73.53536 * 23 22 21 47 47 H 1.09002 * 110.46579 * 196.12669 * 23 22 21 48 48 H 1.08998 * 111.16728 * 155.79272 * 24 23 22 49 49 H 1.09005 * 111.16478 * 280.05459 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 3.5649 -0.6131 -1.3137 6 6 4.0750 -1.3349 -2.5626 7 6 5.5997 -1.2263 -2.6273 8 7 6.0881 -1.9168 -3.8236 9 6 7.4302 -1.9531 -4.0932 10 1 8.1287 -1.4730 -3.4238 11 6 7.8930 -2.6079 -5.2263 12 7 9.1829 -2.6423 -5.4858 13 14 6.6850 -3.4389 -6.3837 14 1 6.2501 -2.4717 -7.4233 15 1 7.3416 -4.6017 -7.0332 16 1 5.5027 -3.9039 -5.6148 17 7 2.0184 -0.6906 1.1962 18 6 2.1471 -0.0182 2.3571 19 8 1.8581 1.1584 2.4117 20 6 2.6489 -0.7288 3.5877 21 7 2.6989 0.2128 4.7090 22 6 1.5841 0.5630 5.6021 23 6 1.7614 1.9995 6.1299 24 6 3.2597 2.0748 6.5430 25 16 4.0324 1.0829 5.2072 26 8 4.3802 1.8977 4.0961 27 8 4.9322 0.1188 5.7364 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.7518 -1.7714 -1.2056 32 1 1.6054 -0.2617 -2.1369 33 1 3.8532 0.4371 -1.3573 34 1 3.9995 -1.0726 -0.4259 35 1 3.7867 -2.3850 -2.5186 36 1 3.6404 -0.8757 -3.4506 37 1 5.8877 -0.1759 -2.6716 38 1 6.0347 -1.6853 -1.7395 39 1 5.4608 -2.3483 -4.4245 40 1 9.5063 -3.0996 -6.2779 41 1 2.2491 -1.6317 1.1526 42 1 3.6481 -1.1212 3.3985 43 1 1.9762 -1.5506 3.8326 44 1 1.5628 -0.1307 6.4426 45 1 0.6454 0.4933 5.0525 46 1 1.5458 2.7236 5.3443 47 1 1.1189 2.1702 6.9937 48 1 3.6207 3.1032 6.5288 49 1 3.4226 1.6161 7.5183 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171118809.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:27 Heat of formation + Delta-G solvation = -94.733861 kcal Electronic energy + Delta-G solvation = -28613.352093 eV Core-core repulsion = 24510.008201 eV Total energy + Delta-G solvation = -4103.343892 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.11606 -37.79566 -37.30830 -36.86040 -36.15243 -35.37890 -33.64838 -33.24435 -31.64153 -30.62180 -28.20300 -27.75020 -26.19968 -24.21068 -22.70127 -22.06050 -21.19261 -20.87569 -20.67601 -19.26610 -17.85836 -17.73523 -17.43467 -17.12616 -16.36054 -16.09729 -15.57552 -15.20551 -14.92989 -14.82815 -14.60967 -14.42879 -14.12669 -13.84178 -13.72568 -13.55491 -13.44031 -13.05998 -13.01536 -12.69309 -12.44185 -12.36950 -12.23700 -12.20896 -12.05864 -11.89139 -11.64191 -11.47491 -11.43287 -11.13956 -10.94752 -10.86044 -10.80920 -10.45573 -10.37033 -10.30126 -10.06999 -9.54562 -9.34716 -9.23987 -8.84614 -7.17706 -5.72224 -3.07314 -0.19037 2.00244 2.42575 2.95216 3.23642 3.39758 3.39873 3.42593 3.47402 3.83071 4.03477 4.32273 4.41009 4.41291 4.59032 4.62940 4.74907 4.81084 4.87252 4.91433 4.94276 5.03195 5.08412 5.20505 5.32112 5.32966 5.33406 5.37548 5.51519 5.57150 5.60576 5.68734 5.82032 5.87773 5.92022 6.04099 6.10586 6.18355 6.22457 6.36527 6.41264 6.82878 6.86424 7.29213 8.03605 8.05337 8.47163 9.26688 9.99074 10.19519 11.46405 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.014819 B = 0.002025 C = 0.001836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1889.008910 B =13821.147840 C =15243.453519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.141 3.859 3 H 0.089 0.911 4 C -0.126 4.126 5 C -0.115 4.115 6 C -0.129 4.129 7 C 0.155 3.845 8 N -0.758 5.758 9 C -0.242 4.242 10 H 0.090 0.910 11 C 0.001 3.999 12 N -0.936 5.936 13 Si 0.887 3.113 14 H -0.284 1.284 15 H -0.291 1.291 16 H -0.278 1.278 17 N -0.724 5.724 18 C 0.487 3.513 19 O -0.519 6.519 20 C 0.140 3.860 21 N -0.976 5.976 22 C 0.085 3.915 23 C -0.124 4.124 24 C -0.598 4.598 25 S 2.569 3.431 26 O -0.939 6.939 27 O -0.956 6.956 28 H 0.057 0.943 29 H 0.065 0.935 30 H 0.055 0.945 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.059 0.941 36 H 0.060 0.940 37 H 0.026 0.974 38 H 0.025 0.975 39 H 0.360 0.640 40 H 0.259 0.741 41 H 0.401 0.599 42 H 0.110 0.890 43 H 0.111 0.889 44 H 0.076 0.924 45 H 0.092 0.908 46 H 0.098 0.902 47 H 0.109 0.891 48 H 0.141 0.859 49 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.323 6.483 28.027 37.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.036 3.964 3 H 0.107 0.893 4 C -0.164 4.164 5 C -0.154 4.154 6 C -0.167 4.167 7 C 0.028 3.972 8 N -0.404 5.404 9 C -0.372 4.372 10 H 0.107 0.893 11 C -0.195 4.195 12 N -0.584 5.584 13 Si 0.717 3.283 14 H -0.211 1.211 15 H -0.218 1.218 16 H -0.204 1.204 17 N -0.378 5.378 18 C 0.270 3.730 19 O -0.394 6.394 20 C 0.011 3.989 21 N -0.816 5.816 22 C -0.041 4.041 23 C -0.163 4.163 24 C -0.729 4.729 25 S 2.664 3.336 26 O -0.928 6.928 27 O -0.946 6.946 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.097 0.903 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.044 0.956 38 H 0.043 0.957 39 H 0.192 0.808 40 H 0.069 0.931 41 H 0.235 0.765 42 H 0.128 0.872 43 H 0.129 0.871 44 H 0.094 0.906 45 H 0.111 0.889 46 H 0.117 0.883 47 H 0.127 0.873 48 H 0.159 0.841 49 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -23.327 7.280 27.661 36.909 hybrid contribution -1.219 -0.924 -0.630 1.654 sum -24.545 6.356 27.031 37.061 Atomic orbital electron populations 1.22157 0.95465 1.01917 1.02379 1.21032 0.93598 0.97894 0.83846 0.89256 1.21932 0.96846 1.00852 0.96806 1.21522 0.93974 1.01352 0.98511 1.21773 0.97292 1.00216 0.97404 1.20642 0.90783 0.95771 0.89975 1.42742 1.05265 1.66133 1.26240 1.19099 0.82341 1.29118 1.06686 0.89254 1.24699 0.95653 1.00813 0.98321 1.69711 1.11710 1.48406 1.28561 0.86502 0.80855 0.79417 0.81479 1.21112 1.21755 1.20401 1.46114 1.67796 1.14144 1.09737 1.21322 0.78443 0.88123 0.85071 1.90708 1.48535 1.15418 1.84740 1.20832 1.04289 0.90727 0.83030 1.56844 1.26840 1.58438 1.39456 1.22031 0.93212 0.95217 0.93685 1.22626 0.93181 0.97080 1.03453 1.30847 1.08649 1.15709 1.17696 1.06568 0.73673 0.76208 0.77105 1.93680 1.81452 1.69594 1.48054 1.93632 1.61114 1.59081 1.80748 0.92390 0.91627 0.92572 0.91388 0.90315 0.91710 0.91888 0.92203 0.92142 0.95635 0.95731 0.80767 0.93115 0.76520 0.87168 0.87136 0.90555 0.88944 0.88326 0.87281 0.84063 0.84154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.27 9.48 37.16 0.35 -0.92 16 2 C 0.14 1.29 2.57 -67.93 -0.17 1.11 16 3 H 0.09 1.04 7.58 -51.93 -0.39 0.65 16 4 C -0.13 -1.15 4.75 -26.73 -0.13 -1.27 16 5 C -0.12 -1.38 5.10 -26.74 -0.14 -1.51 16 6 C -0.13 -1.93 5.33 -26.73 -0.14 -2.08 16 7 C 0.16 3.13 6.26 -4.04 -0.03 3.10 16 8 N -0.76 -18.86 5.41 -59.90 -0.32 -19.19 16 9 C -0.24 -7.17 10.47 -15.06 -0.16 -7.32 16 10 H 0.09 2.83 8.06 -52.49 -0.42 2.40 16 11 C 0.00 0.02 5.50 -17.43 -0.10 -0.08 16 12 N -0.94 -30.19 13.97 55.49 0.78 -29.42 16 13 Si 0.89 22.63 27.74 -169.99 -4.71 17.91 16 14 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 15 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 16 H -0.28 -6.63 6.52 56.52 0.37 -6.27 16 17 N -0.72 -5.91 4.53 -53.80 -0.24 -6.16 16 18 C 0.49 4.80 7.86 -10.99 -0.09 4.72 16 19 O -0.52 -7.09 16.09 5.56 0.09 -7.00 16 20 C 0.14 0.97 6.83 -5.19 -0.04 0.94 16 21 N -0.98 -7.33 2.80 -114.62 -0.32 -7.65 16 22 C 0.08 0.36 6.83 -3.18 -0.02 0.34 16 23 C -0.12 -0.44 6.79 -24.79 -0.17 -0.61 16 24 C -0.60 -2.50 7.51 38.54 0.29 -2.21 16 25 S 2.57 23.44 6.16 -107.50 -0.66 22.78 16 26 O -0.94 -13.02 18.14 -57.43 -1.04 -14.07 16 27 O -0.96 -11.50 18.14 -57.43 -1.04 -12.55 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.06 0.73 7.75 -51.92 -0.40 0.33 16 35 H 0.06 0.87 8.14 -51.94 -0.42 0.45 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.36 8.62 5.53 -40.82 -0.23 8.40 16 40 H 0.26 7.91 8.31 -40.82 -0.34 7.57 16 41 H 0.40 2.26 8.60 -40.82 -0.35 1.90 16 42 H 0.11 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.11 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 45 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 47 H 0.11 0.11 8.14 -51.93 -0.42 -0.31 16 48 H 0.14 0.44 8.14 -51.93 -0.42 0.01 16 49 H 0.14 0.30 8.14 -51.93 -0.42 -0.12 16 LS Contribution 411.39 15.07 6.20 6.20 Total: -1.00 -41.82 411.39 -10.39 -52.21 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -8.57 Total: 2.72 kcal Atomic # 6 Polarization: -5.27 SS G_CDS: -0.53 Total: -5.80 kcal Atomic # 7 Polarization: -62.29 SS G_CDS: -0.11 Total: -62.41 kcal Atomic # 8 Polarization: -31.62 SS G_CDS: -1.99 Total: -33.61 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -4.71 Total: 17.91 kcal Atomic # 16 Polarization: 23.44 SS G_CDS: -0.66 Total: 22.78 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -41.82 -10.39 -52.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171118809.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.524 kcal (2) G-P(sol) polarization free energy of solvation -41.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds