Wall clock time and date at job start Wed Apr 1 2020 05:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46888 * 2 1 4 4 C 1.53002 * 109.47642 * 240.00332 * 2 1 3 5 5 C 1.52991 * 109.47433 * 174.99838 * 4 2 1 6 6 C 1.53000 * 109.47071 * 179.97438 * 5 4 2 7 7 C 1.53001 * 109.47050 * 179.97438 * 6 5 4 8 8 N 1.46505 * 109.47068 * 180.02562 * 7 6 5 9 9 C 1.36939 * 119.99971 * 180.02562 * 8 7 6 10 10 H 1.08000 * 119.99803 * 0.02562 * 9 8 7 11 11 C 1.38809 * 119.99961 * 179.97438 * 9 8 7 12 12 N 1.31621 * 120.00055 * 179.97438 * 11 9 8 13 13 Si 1.86799 * 119.99934 * 0.02562 * 11 9 8 14 14 H 1.48500 * 109.47368 * 89.99621 * 13 11 9 15 15 H 1.48500 * 109.47242 * 209.99837 * 13 11 9 16 16 H 1.48504 * 109.47302 * 329.99480 * 13 11 9 17 17 N 1.46503 * 109.47416 * 119.99919 * 2 1 3 18 18 C 1.34776 * 119.99922 * 275.00387 * 17 2 1 19 19 O 1.21281 * 120.00161 * 0.02562 * 18 17 2 20 20 C 1.50700 * 119.99755 * 179.97438 * 18 17 2 21 21 N 1.46505 * 109.46909 * 179.97438 * 20 18 17 22 22 C 1.47068 * 126.29884 * 85.00553 * 21 20 18 23 23 C 1.54066 * 110.04916 * 208.96145 * 22 21 20 24 24 C 1.55602 * 104.29476 * 314.83004 * 23 22 21 25 25 S 1.66842 * 126.22232 * 264.93402 * 21 20 18 26 26 O 1.42107 * 105.14140 * 61.13608 * 25 21 20 27 27 O 1.42098 * 105.27888 * 291.49366 * 25 21 20 28 28 H 1.08998 * 109.47159 * 299.99622 * 1 2 3 29 29 H 1.09000 * 109.46859 * 60.00042 * 1 2 3 30 30 H 1.09002 * 109.46888 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46719 * 294.99943 * 4 2 1 32 32 H 1.08998 * 109.46677 * 54.99206 * 4 2 1 33 33 H 1.09001 * 109.47253 * 299.99778 * 5 4 2 34 34 H 1.09007 * 109.47282 * 59.99594 * 5 4 2 35 35 H 1.08989 * 109.47597 * 300.00001 * 6 5 4 36 36 H 1.09003 * 109.47132 * 60.00359 * 6 5 4 37 37 H 1.09001 * 109.47586 * 300.00363 * 7 6 5 38 38 H 1.09003 * 109.46750 * 60.00900 * 7 6 5 39 39 H 0.96996 * 119.99678 * 0.02562 * 8 7 6 40 40 H 0.97002 * 120.00028 * 180.02562 * 12 11 9 41 41 H 0.96999 * 120.00041 * 94.99767 * 17 2 1 42 42 H 1.08999 * 109.46956 * 60.00354 * 20 18 17 43 43 H 1.08996 * 109.47713 * 300.00016 * 20 18 17 44 44 H 1.09002 * 109.35873 * 88.81413 * 22 21 20 45 45 H 1.09000 * 109.35301 * 329.10530 * 22 21 20 46 46 H 1.08992 * 110.46854 * 73.53536 * 23 22 21 47 47 H 1.09002 * 110.46579 * 196.12669 * 23 22 21 48 48 H 1.08998 * 111.16728 * 155.79272 * 24 23 22 49 49 H 1.09005 * 111.16478 * 280.05459 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 3.5649 -0.6131 -1.3137 6 6 4.0750 -1.3349 -2.5626 7 6 5.5997 -1.2263 -2.6273 8 7 6.0881 -1.9168 -3.8236 9 6 7.4302 -1.9531 -4.0932 10 1 8.1287 -1.4730 -3.4238 11 6 7.8930 -2.6079 -5.2263 12 7 9.1829 -2.6423 -5.4858 13 14 6.6850 -3.4389 -6.3837 14 1 6.2501 -2.4717 -7.4233 15 1 7.3416 -4.6017 -7.0332 16 1 5.5027 -3.9039 -5.6148 17 7 2.0184 -0.6906 1.1962 18 6 2.1471 -0.0182 2.3571 19 8 1.8581 1.1584 2.4117 20 6 2.6489 -0.7288 3.5877 21 7 2.6989 0.2128 4.7090 22 6 1.5841 0.5630 5.6021 23 6 1.7614 1.9995 6.1299 24 6 3.2597 2.0748 6.5430 25 16 4.0324 1.0829 5.2072 26 8 4.3802 1.8977 4.0961 27 8 4.9322 0.1188 5.7364 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.7518 -1.7714 -1.2056 32 1 1.6054 -0.2617 -2.1369 33 1 3.8532 0.4371 -1.3573 34 1 3.9995 -1.0726 -0.4259 35 1 3.7867 -2.3850 -2.5186 36 1 3.6404 -0.8757 -3.4506 37 1 5.8877 -0.1759 -2.6716 38 1 6.0347 -1.6853 -1.7395 39 1 5.4608 -2.3483 -4.4245 40 1 9.5063 -3.0996 -6.2779 41 1 2.2491 -1.6317 1.1526 42 1 3.6481 -1.1212 3.3985 43 1 1.9762 -1.5506 3.8326 44 1 1.5628 -0.1307 6.4426 45 1 0.6454 0.4933 5.0525 46 1 1.5458 2.7236 5.3443 47 1 1.1189 2.1702 6.9937 48 1 3.6207 3.1032 6.5288 49 1 3.4226 1.6161 7.5183 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171118809.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:26 Heat of formation + Delta-G solvation = -129.049100 kcal Electronic energy + Delta-G solvation = -28614.840113 eV Core-core repulsion = 24510.008201 eV Total energy + Delta-G solvation = -4104.831912 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.86028 -38.40288 -38.09655 -37.76989 -36.99060 -36.82005 -34.77332 -34.13801 -33.19755 -31.88014 -29.08970 -28.67525 -26.66384 -25.76225 -23.62367 -23.02440 -22.32383 -22.03045 -21.46684 -19.93559 -19.63626 -18.46024 -18.34904 -17.71857 -17.09218 -16.78558 -16.64777 -16.29049 -16.23882 -15.84634 -15.52543 -15.41652 -15.02260 -14.86551 -14.70151 -14.40551 -14.23886 -14.14051 -13.98823 -13.86943 -13.47974 -13.21295 -13.05742 -13.04724 -12.96361 -12.93458 -12.68042 -12.47847 -12.40554 -12.26731 -12.07986 -12.02172 -11.89738 -11.77209 -11.52513 -11.45196 -11.43930 -11.13328 -10.99325 -9.99741 -9.92131 -9.33526 -8.05484 -5.40322 -0.78269 1.36207 1.41837 1.45513 1.49353 1.69515 2.30434 2.47183 2.64478 3.01860 3.25087 3.37060 3.48012 3.62646 3.83292 3.91297 3.97642 4.03562 4.07132 4.08256 4.32102 4.34833 4.39551 4.47993 4.54795 4.57038 4.63422 4.69761 4.78451 4.85193 4.86694 4.91749 4.97831 5.00025 5.02408 5.07574 5.13426 5.24366 5.33700 5.42630 5.47214 5.49075 5.65307 5.71856 6.18691 6.64681 7.05044 7.34934 7.80478 8.02213 9.16259 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.014819 B = 0.002025 C = 0.001836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1889.008910 B =13821.147840 C =15243.453519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.142 3.858 3 H 0.057 0.943 4 C -0.114 4.114 5 C -0.110 4.110 6 C -0.114 4.114 7 C 0.148 3.852 8 N -0.759 5.759 9 C -0.244 4.244 10 H 0.049 0.951 11 C -0.070 4.070 12 N -0.985 5.985 13 Si 0.966 3.034 14 H -0.276 1.276 15 H -0.293 1.293 16 H -0.247 1.247 17 N -0.716 5.716 18 C 0.480 3.520 19 O -0.564 6.564 20 C 0.134 3.866 21 N -0.979 5.979 22 C 0.076 3.924 23 C -0.124 4.124 24 C -0.559 4.559 25 S 2.544 3.456 26 O -1.005 7.005 27 O -0.999 6.999 28 H 0.042 0.958 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.091 0.909 32 H 0.086 0.914 33 H 0.047 0.953 34 H 0.064 0.936 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.012 0.988 38 H 0.019 0.981 39 H 0.368 0.632 40 H 0.259 0.741 41 H 0.415 0.585 42 H 0.110 0.890 43 H 0.153 0.847 44 H 0.108 0.892 45 H 0.096 0.904 46 H 0.081 0.919 47 H 0.148 0.852 48 H 0.157 0.843 49 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.399 5.076 29.333 41.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.037 3.963 3 H 0.075 0.925 4 C -0.152 4.152 5 C -0.149 4.149 6 C -0.152 4.152 7 C 0.022 3.978 8 N -0.405 5.405 9 C -0.375 4.375 10 H 0.067 0.933 11 C -0.261 4.261 12 N -0.635 5.635 13 Si 0.791 3.209 14 H -0.202 1.202 15 H -0.219 1.219 16 H -0.171 1.171 17 N -0.370 5.370 18 C 0.265 3.735 19 O -0.442 6.442 20 C 0.006 3.994 21 N -0.819 5.819 22 C -0.049 4.049 23 C -0.164 4.164 24 C -0.694 4.694 25 S 2.645 3.355 26 O -0.994 6.994 27 O -0.989 6.989 28 H 0.062 0.938 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.109 0.891 32 H 0.105 0.895 33 H 0.066 0.934 34 H 0.082 0.918 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.030 0.970 38 H 0.037 0.963 39 H 0.202 0.798 40 H 0.068 0.932 41 H 0.252 0.748 42 H 0.128 0.872 43 H 0.171 0.829 44 H 0.126 0.874 45 H 0.114 0.886 46 H 0.100 0.900 47 H 0.166 0.834 48 H 0.175 0.825 49 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -27.416 5.833 28.960 40.304 hybrid contribution 0.077 -0.383 -0.907 0.988 sum -27.339 5.451 28.053 39.549 Atomic orbital electron populations 1.22064 0.94008 1.02927 1.02009 1.20933 0.94653 0.96409 0.84329 0.92483 1.21835 0.94162 1.02297 0.96925 1.21457 0.96326 0.99914 0.97166 1.21653 0.92913 1.01620 0.99020 1.20856 0.94674 0.94274 0.87966 1.42727 1.03497 1.66568 1.27757 1.19058 0.84070 1.28324 1.06029 0.93317 1.25671 0.97880 1.02027 1.00498 1.69913 1.14369 1.49803 1.29464 0.85258 0.78897 0.77916 0.78782 1.20226 1.21911 1.17095 1.46072 1.67066 1.14783 1.09097 1.21930 0.77658 0.87741 0.86155 1.90685 1.50666 1.17372 1.85519 1.21073 1.05189 0.91350 0.81821 1.56749 1.27284 1.58092 1.39821 1.22365 0.92082 0.96342 0.94115 1.22782 0.92873 0.96293 1.04410 1.30643 1.08016 1.15052 1.15677 1.06954 0.74338 0.76264 0.77907 1.93601 1.83187 1.70734 1.51913 1.93571 1.63448 1.60677 1.81158 0.93837 0.90971 0.90751 0.89078 0.89507 0.93366 0.91753 0.90712 0.91500 0.96958 0.96307 0.79816 0.93196 0.74816 0.87179 0.82944 0.87445 0.88595 0.90001 0.83390 0.82546 0.80875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 9.48 71.98 0.68 -1.45 16 2 C 0.14 2.46 2.57 44.99 0.12 2.58 16 3 H 0.06 1.38 7.58 -2.39 -0.02 1.37 16 4 C -0.11 -1.80 4.75 30.59 0.15 -1.66 16 5 C -0.11 -2.51 5.10 30.59 0.16 -2.36 16 6 C -0.11 -3.20 5.33 30.59 0.16 -3.04 16 7 C 0.15 5.98 6.26 86.38 0.54 6.52 16 8 N -0.76 -37.37 5.41 -343.44 -1.86 -39.23 16 9 C -0.24 -14.75 10.47 84.03 0.88 -13.87 16 10 H 0.05 3.26 8.06 -2.91 -0.02 3.23 16 11 C -0.07 -4.26 5.50 84.86 0.47 -3.79 16 12 N -0.99 -65.24 13.97 21.65 0.30 -64.94 16 13 Si 0.97 46.25 27.74 68.60 1.90 48.15 16 14 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 15 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 16 H -0.25 -10.46 6.52 99.48 0.65 -9.81 16 17 N -0.72 -11.01 4.53 -442.52 -2.00 -13.01 16 18 C 0.48 9.50 7.86 87.66 0.69 10.19 16 19 O -0.56 -16.10 16.09 -3.03 -0.05 -16.15 16 20 C 0.13 1.77 6.83 85.63 0.58 2.36 16 21 N -0.98 -14.11 2.80 -516.54 -1.45 -15.55 16 22 C 0.08 0.46 6.83 86.63 0.59 1.05 16 23 C -0.12 -0.54 6.79 31.85 0.22 -0.32 16 24 C -0.56 -3.34 7.51 72.88 0.55 -2.79 16 25 S 2.54 48.13 6.16 -56.49 -0.35 47.78 16 26 O -1.01 -30.58 18.14 -127.76 -2.32 -32.90 16 27 O -1.00 -25.14 18.14 -127.76 -2.32 -27.46 16 28 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.06 1.44 7.75 -2.38 -0.02 1.42 16 35 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 38 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.37 16.76 5.53 -92.71 -0.51 16.25 16 40 H 0.26 16.20 8.31 -92.71 -0.77 15.43 16 41 H 0.41 3.85 8.60 -92.71 -0.80 3.05 16 42 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.15 0.64 8.14 -2.39 -0.02 0.62 16 44 H 0.11 0.03 8.14 -2.39 -0.02 0.01 16 45 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 46 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 47 H 0.15 -0.41 8.14 -2.39 -0.02 -0.43 16 48 H 0.16 0.60 8.14 -2.39 -0.02 0.58 16 49 H 0.17 0.02 8.14 -2.38 -0.02 0.00 16 Total: -1.00 -97.30 411.39 -2.78 -100.08 By element: Atomic # 1 Polarization: 20.23 SS G_CDS: -0.43 Total: 19.80 kcal Atomic # 6 Polarization: -12.35 SS G_CDS: 5.78 Total: -6.57 kcal Atomic # 7 Polarization: -127.73 SS G_CDS: -5.01 Total: -132.73 kcal Atomic # 8 Polarization: -71.82 SS G_CDS: -4.68 Total: -76.51 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 1.90 Total: 48.15 kcal Atomic # 16 Polarization: 48.13 SS G_CDS: -0.35 Total: 47.78 kcal Total: -97.30 -2.78 -100.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171118809.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.971 kcal (2) G-P(sol) polarization free energy of solvation -97.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds