Wall clock time and date at job start Wed Apr 1 2020 05:21:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47360 * 2 1 4 4 C 1.52997 * 109.47211 * 120.00139 * 2 1 3 5 5 C 1.52998 * 109.47564 * 185.00148 * 4 2 1 6 6 C 1.52998 * 109.47195 * 180.02562 * 5 4 2 7 7 C 1.52998 * 109.47042 * 179.97438 * 6 5 4 8 8 N 1.46503 * 109.47185 * 179.97438 * 7 6 5 9 9 C 1.36939 * 119.99746 * 180.02562 * 8 7 6 10 10 H 1.07996 * 120.00307 * 0.02562 * 9 8 7 11 11 C 1.38813 * 119.99644 * 180.02562 * 9 8 7 12 12 N 1.31622 * 120.00010 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 119.99948 * 179.97438 * 11 9 8 14 14 H 1.48491 * 109.47022 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.47042 * 120.00211 * 13 11 9 16 16 H 1.48502 * 109.47300 * 240.00028 * 13 11 9 17 17 N 1.46501 * 109.47168 * 240.00290 * 2 1 3 18 18 C 1.34771 * 120.00284 * 85.00495 * 17 2 1 19 19 O 1.21285 * 119.99781 * 359.97438 * 18 17 2 20 20 C 1.50699 * 120.00313 * 179.97438 * 18 17 2 21 21 N 1.46497 * 109.47304 * 179.97438 * 20 18 17 22 22 C 1.46453 * 126.08475 * 274.94342 * 21 20 18 23 23 C 1.53206 * 113.70411 * 181.76310 * 22 21 20 24 24 C 1.55558 * 106.23927 * 332.45219 * 23 22 21 25 25 S 1.67295 * 126.08490 * 95.00216 * 21 20 18 26 26 O 1.42100 * 105.40553 * 84.99284 * 25 21 20 27 27 O 1.42105 * 105.40208 * 314.73462 * 25 21 20 28 28 H 1.08997 * 109.46874 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47230 * 300.00282 * 1 2 3 30 30 H 1.09009 * 109.46536 * 59.99974 * 1 2 3 31 31 H 1.09005 * 109.47128 * 305.00454 * 4 2 1 32 32 H 1.09003 * 109.46998 * 64.99568 * 4 2 1 33 33 H 1.09002 * 109.46716 * 300.00050 * 5 4 2 34 34 H 1.08997 * 109.47052 * 59.99843 * 5 4 2 35 35 H 1.08992 * 109.47230 * 299.99843 * 6 5 4 36 36 H 1.09003 * 109.46975 * 60.00240 * 6 5 4 37 37 H 1.08996 * 109.47708 * 300.00421 * 7 6 5 38 38 H 1.09009 * 109.47128 * 60.00305 * 7 6 5 39 39 H 0.96997 * 120.00156 * 0.02562 * 8 7 6 40 40 H 0.97005 * 119.99815 * 179.97438 * 12 11 9 41 41 H 0.97003 * 119.99750 * 264.99752 * 17 2 1 42 42 H 1.09004 * 109.46885 * 59.99782 * 20 18 17 43 43 H 1.09002 * 109.47411 * 299.99987 * 20 18 17 44 44 H 1.09005 * 108.64252 * 60.65841 * 22 21 20 45 45 H 1.08996 * 108.51094 * 302.77536 * 22 21 20 46 46 H 1.09002 * 110.09938 * 213.26183 * 23 22 21 47 47 H 1.08999 * 110.10041 * 91.64695 * 23 22 21 48 48 H 1.08999 * 111.37337 * 279.38883 * 24 23 22 49 49 H 1.09000 * 111.36876 * 154.59199 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.6133 1.3137 6 6 4.0748 -1.3352 2.5626 7 6 5.5997 -1.2277 2.6268 8 7 6.0880 -1.9184 3.8230 9 6 7.4301 -1.9547 4.0927 10 1 8.1285 -1.4739 3.4238 11 6 7.8927 -2.6096 5.2258 12 7 7.0416 -3.1960 6.0407 13 14 9.7236 -2.6598 5.5934 14 1 10.4619 -1.9317 4.5305 15 1 9.9828 -2.0153 6.9059 16 1 10.1813 -4.0719 5.6363 17 7 2.0184 -0.6905 -1.1962 18 6 2.1472 -0.0182 -2.3571 19 8 1.8584 1.1585 -2.4116 20 6 2.6501 -0.7284 -3.5874 21 7 2.6988 0.2128 -4.7090 22 6 1.5853 0.5556 -5.5964 23 6 1.9629 1.5431 -6.7052 24 6 3.1461 2.3875 -6.1513 25 16 4.0366 1.0864 -5.2049 26 8 4.7567 0.2167 -6.0676 27 8 4.6087 1.6092 -4.0137 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 1.6053 -0.2618 2.1370 32 1 1.7516 -1.7715 1.2055 33 1 3.9994 -1.0728 0.4260 34 1 3.8532 0.4369 1.3574 35 1 3.6402 -0.8761 3.4505 36 1 3.7865 -2.3854 2.5184 37 1 6.0340 -1.6870 1.7389 38 1 5.8884 -0.1775 2.6708 39 1 5.4607 -2.3499 4.4239 40 1 7.3650 -3.6540 6.8323 41 1 2.2491 -1.6317 -1.1526 42 1 1.9778 -1.5507 -3.8326 43 1 3.6494 -1.1203 -3.3979 44 1 0.7850 0.9921 -4.9987 45 1 1.2151 -0.3604 -6.0568 46 1 1.1162 2.1901 -6.9349 47 1 2.2748 1.0020 -7.5985 48 1 2.7932 3.1839 -5.4960 49 1 3.7627 2.7842 -6.9578 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171118812.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:30 Heat of formation + Delta-G solvation = -99.305168 kcal Electronic energy + Delta-G solvation = -28529.523803 eV Core-core repulsion = 24425.981685 eV Total energy + Delta-G solvation = -4103.542118 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.09479 -37.84895 -37.35597 -36.74131 -36.17470 -35.20742 -33.65028 -33.19469 -31.57903 -30.29936 -28.21801 -27.42136 -26.31146 -24.19055 -22.64641 -22.23298 -21.23623 -20.73311 -20.58718 -19.28004 -17.83833 -17.54561 -17.23843 -16.96348 -16.28575 -16.14895 -15.70892 -15.15305 -15.08986 -14.74581 -14.63549 -14.31338 -13.97085 -13.79780 -13.66898 -13.47816 -13.25973 -13.12281 -12.91125 -12.85555 -12.42558 -12.39032 -12.26612 -12.25982 -12.06172 -11.73899 -11.47819 -11.41174 -11.22628 -10.97043 -10.92145 -10.78924 -10.66672 -10.42457 -10.36553 -10.25340 -9.92683 -9.63033 -9.27757 -9.20718 -8.82135 -6.85872 -5.71742 -2.99765 -0.17659 1.96977 2.44107 2.98068 3.21562 3.32177 3.46962 3.52563 3.55146 3.78116 4.05451 4.34304 4.40382 4.44967 4.59929 4.69832 4.74223 4.83974 4.91003 4.96180 5.01357 5.03546 5.16287 5.25317 5.27754 5.41462 5.45073 5.46598 5.58608 5.64743 5.72364 5.81512 5.89850 5.95474 5.98471 6.13246 6.26741 6.35732 6.41983 6.43321 6.52431 6.95345 6.99000 7.32056 7.76030 8.05157 8.47869 9.58612 10.18078 10.52738 11.51488 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013279 B = 0.001997 C = 0.001784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.083910 B =14017.563797 C =15689.696048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.141 3.859 3 H 0.089 0.911 4 C -0.126 4.126 5 C -0.115 4.115 6 C -0.125 4.125 7 C 0.151 3.849 8 N -0.735 5.735 9 C -0.236 4.236 10 H 0.071 0.929 11 C -0.018 4.018 12 N -0.935 5.935 13 Si 0.907 3.093 14 H -0.280 1.280 15 H -0.292 1.292 16 H -0.292 1.292 17 N -0.723 5.723 18 C 0.491 3.509 19 O -0.526 6.526 20 C 0.142 3.858 21 N -0.971 5.971 22 C 0.082 3.918 23 C -0.122 4.122 24 C -0.591 4.591 25 S 2.564 3.436 26 O -0.950 6.950 27 O -0.942 6.942 28 H 0.056 0.944 29 H 0.065 0.935 30 H 0.056 0.944 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.017 0.983 38 H 0.017 0.983 39 H 0.383 0.617 40 H 0.254 0.746 41 H 0.401 0.599 42 H 0.111 0.889 43 H 0.110 0.890 44 H 0.078 0.922 45 H 0.079 0.921 46 H 0.110 0.890 47 H 0.095 0.905 48 H 0.144 0.856 49 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.300 7.990 -28.655 35.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.036 3.964 3 H 0.107 0.893 4 C -0.164 4.164 5 C -0.153 4.153 6 C -0.163 4.163 7 C 0.024 3.976 8 N -0.379 5.379 9 C -0.367 4.367 10 H 0.088 0.912 11 C -0.213 4.213 12 N -0.584 5.584 13 Si 0.739 3.261 14 H -0.205 1.205 15 H -0.219 1.219 16 H -0.219 1.219 17 N -0.376 5.376 18 C 0.275 3.725 19 O -0.401 6.401 20 C 0.013 3.987 21 N -0.811 5.811 22 C -0.045 4.045 23 C -0.161 4.161 24 C -0.721 4.721 25 S 2.660 3.340 26 O -0.940 6.940 27 O -0.932 6.932 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.097 0.903 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.034 0.966 38 H 0.035 0.965 39 H 0.216 0.784 40 H 0.064 0.936 41 H 0.235 0.765 42 H 0.129 0.871 43 H 0.128 0.872 44 H 0.096 0.904 45 H 0.098 0.902 46 H 0.128 0.872 47 H 0.114 0.886 48 H 0.162 0.838 49 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -18.334 8.639 -28.453 34.933 hybrid contribution 0.232 -0.373 0.362 0.569 sum -18.102 8.265 -28.091 34.425 Atomic orbital electron populations 1.22158 0.95464 1.01954 1.02348 1.21044 0.93588 0.97866 0.83875 0.89308 1.21935 0.96923 1.00867 0.96697 1.21528 0.93910 1.01224 0.98658 1.21720 0.97248 1.00205 0.97107 1.20662 0.91031 0.95384 0.90539 1.42403 1.05340 1.64962 1.25212 1.19314 0.83952 1.28087 1.05375 0.91152 1.24756 0.97756 1.01072 0.97759 1.69678 1.32653 1.40915 1.15204 0.86099 0.85091 0.77186 0.77752 1.20545 1.21897 1.21890 1.46109 1.67607 1.14173 1.09722 1.21267 0.78152 0.88036 0.85031 1.90678 1.49036 1.15596 1.84829 1.20794 1.04192 0.90679 0.83009 1.56638 1.26930 1.58240 1.39265 1.21579 0.91687 0.99642 0.91549 1.22378 0.98958 0.96616 0.98166 1.30748 1.11416 1.15160 1.14819 1.06745 0.73992 0.77311 0.75978 1.93661 1.69175 1.62562 1.68588 1.93662 1.75809 1.79606 1.44074 0.92534 0.91594 0.92446 0.90277 0.91347 0.92064 0.91923 0.92100 0.92157 0.96551 0.96515 0.78375 0.93644 0.76476 0.87147 0.87234 0.90370 0.90249 0.87153 0.88636 0.83763 0.84287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.34 9.48 37.16 0.35 -0.99 16 2 C 0.14 1.35 2.57 -67.93 -0.17 1.18 16 3 H 0.09 1.07 7.58 -51.93 -0.39 0.67 16 4 C -0.13 -1.23 4.75 -26.73 -0.13 -1.36 16 5 C -0.12 -1.47 5.10 -26.73 -0.14 -1.60 16 6 C -0.12 -2.03 5.33 -26.73 -0.14 -2.17 16 7 C 0.15 3.21 6.26 -4.04 -0.03 3.18 16 8 N -0.74 -19.56 5.60 -59.91 -0.34 -19.90 16 9 C -0.24 -6.91 9.99 -15.06 -0.15 -7.06 16 10 H 0.07 2.01 7.83 -52.49 -0.41 1.60 16 11 C -0.02 -0.53 5.50 -17.43 -0.10 -0.63 16 12 N -0.94 -29.05 13.06 55.49 0.72 -28.33 16 13 Si 0.91 23.08 29.55 -169.99 -5.02 18.06 16 14 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 15 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 16 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 17 N -0.72 -6.19 4.53 -53.81 -0.24 -6.43 16 18 C 0.49 4.97 7.86 -10.99 -0.09 4.89 16 19 O -0.53 -7.21 16.09 5.55 0.09 -7.12 16 20 C 0.14 1.02 6.72 -5.20 -0.03 0.98 16 21 N -0.97 -7.55 2.82 -115.58 -0.33 -7.87 16 22 C 0.08 0.39 6.84 -3.96 -0.03 0.36 16 23 C -0.12 -0.39 6.62 -25.26 -0.17 -0.55 16 24 C -0.59 -2.79 7.66 38.52 0.29 -2.50 16 25 S 2.56 23.62 6.19 -107.50 -0.67 22.95 16 26 O -0.95 -11.12 18.14 -57.37 -1.04 -12.16 16 27 O -0.94 -13.04 18.04 -57.37 -1.03 -14.08 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.54 8.14 -51.92 -0.42 0.11 16 31 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.76 7.75 -51.93 -0.40 0.35 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 36 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 37 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.02 0.37 8.14 -51.92 -0.42 -0.06 16 39 H 0.38 10.57 7.67 -40.82 -0.31 10.25 16 40 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 41 H 0.40 2.43 8.60 -40.82 -0.35 2.08 16 42 H 0.11 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 46 H 0.11 0.15 8.14 -51.93 -0.42 -0.27 16 47 H 0.10 0.20 8.14 -51.93 -0.42 -0.23 16 48 H 0.14 0.65 8.14 -51.93 -0.42 0.23 16 49 H 0.14 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 414.33 15.07 6.24 6.24 Total: -1.00 -40.62 414.33 -10.75 -51.37 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -8.62 Total: 3.53 kcal Atomic # 6 Polarization: -5.74 SS G_CDS: -0.52 Total: -6.26 kcal Atomic # 7 Polarization: -62.35 SS G_CDS: -0.18 Total: -62.53 kcal Atomic # 8 Polarization: -31.37 SS G_CDS: -1.99 Total: -33.36 kcal Atomic # 14 Polarization: 23.08 SS G_CDS: -5.02 Total: 18.06 kcal Atomic # 16 Polarization: 23.62 SS G_CDS: -0.67 Total: 22.95 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -40.62 -10.75 -51.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171118812.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.940 kcal (2) G-P(sol) polarization free energy of solvation -40.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds