Wall clock time and date at job start Wed Apr 1 2020 05:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09002 * 109.47262 * 2 1 4 4 C 1.53009 * 109.46953 * 119.99350 * 2 1 3 5 5 C 1.52996 * 109.46924 * 184.99962 * 4 2 1 6 6 C 1.53009 * 109.46924 * 179.97438 * 5 4 2 7 7 C 1.52996 * 109.46924 * 180.02562 * 6 5 4 8 8 N 1.46504 * 109.46681 * 179.97438 * 7 6 5 9 9 C 1.36943 * 119.99781 * 180.02562 * 8 7 6 10 10 H 1.08002 * 119.99788 * 359.97438 * 9 8 7 11 11 C 1.38811 * 119.99622 * 180.27904 * 9 8 7 12 12 N 1.31614 * 120.00467 * 359.72375 * 11 9 8 13 13 Si 1.86801 * 119.99700 * 179.72266 * 11 9 8 14 14 H 1.48501 * 109.46896 * 89.99850 * 13 11 9 15 15 H 1.48499 * 109.47039 * 210.00011 * 13 11 9 16 16 H 1.48501 * 109.47275 * 329.99811 * 13 11 9 17 17 N 1.46500 * 109.47503 * 239.99398 * 2 1 3 18 18 C 1.34772 * 119.99660 * 85.00420 * 17 2 1 19 19 O 1.21282 * 120.00614 * 359.97438 * 18 17 2 20 20 C 1.50709 * 119.99917 * 180.02562 * 18 17 2 21 21 H 1.09000 * 111.01739 * 25.69228 * 20 18 17 22 22 C 1.55607 * 111.16716 * 149.99528 * 20 18 17 23 23 C 1.54063 * 104.29257 * 155.78557 * 22 20 18 24 24 N 1.47072 * 110.10712 * 314.79560 * 23 22 20 25 25 C 1.46503 * 126.29912 * 209.06456 * 24 23 22 26 26 S 1.67001 * 107.39725 * 29.03604 * 24 23 22 27 27 O 1.42099 * 105.13014 * 241.06927 * 26 24 23 28 28 O 1.42101 * 105.13665 * 111.39403 * 26 24 23 29 29 H 1.09002 * 109.47262 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47649 * 300.00641 * 1 2 3 31 31 H 1.09007 * 109.46982 * 60.00828 * 1 2 3 32 32 H 1.09000 * 109.46573 * 65.00668 * 4 2 1 33 33 H 1.08997 * 109.47029 * 305.00295 * 4 2 1 34 34 H 1.09006 * 109.47179 * 60.00557 * 5 4 2 35 35 H 1.08997 * 109.47540 * 300.00020 * 5 4 2 36 36 H 1.08998 * 109.46895 * 60.00008 * 6 5 4 37 37 H 1.08997 * 109.47029 * 300.00333 * 6 5 4 38 38 H 1.09006 * 109.47179 * 60.00557 * 7 6 5 39 39 H 1.08997 * 109.47540 * 300.00020 * 7 6 5 40 40 H 0.97000 * 120.00410 * 0.02562 * 8 7 6 41 41 H 0.96995 * 120.00147 * 180.02562 * 12 11 9 42 42 H 0.96997 * 120.00125 * 265.00433 * 17 2 1 43 43 H 1.08998 * 110.46645 * 274.49139 * 22 20 18 44 44 H 1.09001 * 110.46424 * 36.95233 * 22 20 18 45 45 H 1.08994 * 109.35695 * 74.97558 * 23 22 20 46 46 H 1.09004 * 109.35685 * 194.62327 * 23 22 20 47 47 H 1.08994 * 109.47296 * 359.97438 * 25 24 23 48 48 H 1.09001 * 109.46762 * 119.98225 * 25 24 23 49 49 H 1.09001 * 109.46697 * 239.97975 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2494 5 6 3.5647 -0.6132 1.3138 6 6 4.0746 -1.3338 2.5636 7 6 5.5994 -1.2253 2.6283 8 7 6.0875 -1.9148 3.8253 9 6 7.4295 -1.9500 4.0957 10 1 8.1280 -1.4699 3.4263 11 6 7.8925 -2.6082 5.2267 12 7 7.0413 -3.1938 6.0421 13 14 9.7237 -2.6630 5.5915 14 1 10.0978 -1.4914 6.4238 15 1 10.0453 -3.9139 6.3244 16 1 10.4838 -2.6272 4.3162 17 7 2.0184 -0.6907 -1.1961 18 6 2.1472 -0.0184 -2.3570 19 8 1.8583 1.1582 -2.4118 20 6 2.6491 -0.7291 -3.5876 21 1 2.4400 -1.7975 -3.5346 22 6 2.0516 -0.1031 -4.8809 23 6 3.0673 -0.4630 -5.9820 24 7 4.4368 -0.2114 -5.5084 25 6 5.5884 0.1517 -6.3380 26 16 4.4373 -0.4150 -3.8508 27 8 4.8218 0.8467 -3.3223 28 8 5.2054 -1.5883 -3.6213 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 1.7516 -1.7714 1.2057 33 1 1.6052 -0.2616 2.1370 34 1 3.8531 0.4371 1.3575 35 1 3.9994 -1.0728 0.4262 36 1 3.7862 -2.3840 2.5205 37 1 3.6399 -0.8738 3.4510 38 1 5.8874 -0.1749 2.6717 39 1 6.0344 -1.6850 1.7410 40 1 5.4602 -2.3463 4.4263 41 1 7.3648 -3.6534 6.8326 42 1 2.2490 -1.6318 -1.1524 43 1 1.0784 -0.5413 -5.1020 44 1 1.9668 0.9786 -4.7767 45 1 2.9622 -1.5168 -6.2399 46 1 2.8732 0.1452 -6.8654 47 1 5.2802 0.2102 -7.3818 48 1 5.9756 1.1192 -6.0186 49 1 6.3662 -0.6044 -6.2308 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001175645956.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:57 Heat of formation + Delta-G solvation = -98.086409 kcal Electronic energy + Delta-G solvation = -29007.914524 eV Core-core repulsion = 24904.425255 eV Total energy + Delta-G solvation = -4103.489269 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -40.43785 -37.86372 -37.44788 -36.97230 -36.28764 -35.28422 -33.72112 -33.23211 -31.63393 -30.32184 -28.25096 -27.45711 -26.02019 -24.27195 -23.21872 -22.18046 -21.28286 -20.91304 -20.64759 -19.42411 -18.19883 -17.69861 -17.23271 -16.97167 -16.65216 -15.92821 -15.61797 -15.15734 -14.99672 -14.76028 -14.60884 -14.47628 -14.02068 -13.85838 -13.65955 -13.51970 -13.40704 -13.13949 -12.99096 -12.92052 -12.59440 -12.45086 -12.37389 -12.34045 -12.02215 -11.78934 -11.62071 -11.50931 -11.27776 -11.11243 -11.00189 -10.77645 -10.69385 -10.41361 -10.37361 -10.27052 -9.95277 -9.63407 -9.53431 -9.43322 -8.80495 -6.84943 -5.70466 -2.98527 -0.43365 1.97410 2.14934 2.53344 3.12652 3.26827 3.48629 3.53324 3.55608 3.79408 3.86744 4.20202 4.33322 4.46271 4.53969 4.61577 4.68153 4.82018 4.93044 4.98023 5.00372 5.13611 5.21154 5.29497 5.31931 5.34873 5.36487 5.40089 5.54321 5.61176 5.66547 5.75405 5.84296 5.90822 5.99740 6.07464 6.10901 6.31539 6.33117 6.42138 6.50487 6.95187 6.98760 7.00195 7.68933 7.77011 8.49159 9.59890 10.18992 10.53854 11.52785 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011540 B = 0.002417 C = 0.002060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2425.861677 B =11579.580292 C =13590.738193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.137 3.863 3 H 0.095 0.905 4 C -0.128 4.128 5 C -0.120 4.120 6 C -0.125 4.125 7 C 0.150 3.850 8 N -0.735 5.735 9 C -0.237 4.237 10 H 0.070 0.930 11 C -0.017 4.017 12 N -0.936 5.936 13 Si 0.907 3.093 14 H -0.290 1.290 15 H -0.292 1.292 16 H -0.282 1.282 17 N -0.716 5.716 18 C 0.539 3.461 19 O -0.509 6.509 20 C -0.605 4.605 21 H 0.166 0.834 22 C -0.109 4.109 23 C 0.080 3.920 24 N -0.998 5.998 25 C 0.121 3.879 26 S 2.589 3.411 27 O -0.928 6.928 28 O -0.938 6.938 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.059 0.941 32 H 0.070 0.930 33 H 0.084 0.916 34 H 0.065 0.935 35 H 0.058 0.942 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.018 0.982 39 H 0.017 0.983 40 H 0.383 0.617 41 H 0.254 0.746 42 H 0.404 0.596 43 H 0.114 0.886 44 H 0.110 0.890 45 H 0.078 0.922 46 H 0.098 0.902 47 H 0.081 0.919 48 H 0.064 0.936 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.219 4.942 -28.559 33.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.034 3.966 3 H 0.113 0.887 4 C -0.166 4.166 5 C -0.158 4.158 6 C -0.163 4.163 7 C 0.022 3.978 8 N -0.379 5.379 9 C -0.368 4.368 10 H 0.088 0.912 11 C -0.212 4.212 12 N -0.585 5.585 13 Si 0.739 3.261 14 H -0.217 1.217 15 H -0.218 1.218 16 H -0.207 1.207 17 N -0.369 5.369 18 C 0.321 3.679 19 O -0.383 6.383 20 C -0.715 4.715 21 H 0.183 0.817 22 C -0.148 4.148 23 C -0.046 4.046 24 N -0.841 5.841 25 C -0.023 4.023 26 S 2.680 3.320 27 O -0.917 6.917 28 O -0.927 6.927 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.078 0.922 32 H 0.089 0.911 33 H 0.102 0.898 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.036 0.964 39 H 0.035 0.965 40 H 0.216 0.784 41 H 0.064 0.936 42 H 0.239 0.761 43 H 0.133 0.867 44 H 0.128 0.872 45 H 0.096 0.904 46 H 0.116 0.884 47 H 0.100 0.900 48 H 0.082 0.918 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -16.378 5.894 -28.031 32.995 hybrid contribution 0.209 -0.962 0.144 0.995 sum -16.169 4.932 -27.886 32.610 Atomic orbital electron populations 1.22171 0.94927 1.02257 1.02716 1.21208 0.94058 0.98022 0.83346 0.88731 1.21968 0.96964 1.01063 0.96587 1.21584 0.93890 1.01494 0.98820 1.21720 0.97352 1.00263 0.96950 1.20677 0.90975 0.95485 0.90635 1.42385 1.05356 1.65038 1.25095 1.19278 0.83946 1.28094 1.05496 0.91184 1.24742 0.97734 1.00966 0.97791 1.69660 1.32755 1.40851 1.15249 0.86173 0.85134 0.76973 0.77865 1.21740 1.21789 1.20728 1.46134 1.66875 1.14313 1.09557 1.18901 0.79194 0.86837 0.82972 1.90760 1.48534 1.14895 1.84142 1.31029 1.27639 1.10626 1.02177 0.81655 1.22689 1.00341 1.04108 0.87657 1.22129 0.80387 1.02687 0.99394 1.57144 1.13936 1.87059 1.25998 1.21325 0.85518 1.00312 0.95114 1.06249 0.75914 0.75630 0.74167 1.93667 1.78873 1.41581 1.77619 1.93662 1.64648 1.50432 1.83964 0.92322 0.91170 0.92205 0.91089 0.89758 0.91607 0.92304 0.92043 0.91924 0.96427 0.96469 0.78363 0.93592 0.76101 0.86719 0.87162 0.90418 0.88412 0.90011 0.91755 0.91817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.29 9.48 37.15 0.35 -0.94 16 2 C 0.14 1.30 2.57 -67.93 -0.17 1.12 16 3 H 0.09 1.07 7.58 -51.93 -0.39 0.68 16 4 C -0.13 -1.23 4.75 -26.73 -0.13 -1.36 16 5 C -0.12 -1.55 5.10 -26.73 -0.14 -1.69 16 6 C -0.12 -2.05 5.33 -26.73 -0.14 -2.19 16 7 C 0.15 3.23 6.26 -4.04 -0.03 3.20 16 8 N -0.73 -19.73 5.60 -59.91 -0.34 -20.06 16 9 C -0.24 -6.99 9.99 -15.06 -0.15 -7.14 16 10 H 0.07 2.02 7.83 -52.49 -0.41 1.61 16 11 C -0.02 -0.50 5.50 -17.43 -0.10 -0.60 16 12 N -0.94 -29.21 13.06 55.49 0.72 -28.48 16 13 Si 0.91 23.22 29.55 -169.99 -5.02 18.20 16 14 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 15 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 16 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 17 N -0.72 -6.38 4.53 -53.80 -0.24 -6.62 16 18 C 0.54 5.52 6.75 -10.98 -0.07 5.45 16 19 O -0.51 -6.89 15.63 5.56 0.09 -6.80 16 20 C -0.60 -4.30 3.71 -26.49 -0.10 -4.40 16 21 H 0.17 0.57 8.14 -51.93 -0.42 0.15 16 22 C -0.11 -0.52 6.16 -24.79 -0.15 -0.68 16 23 C 0.08 0.33 6.81 -3.18 -0.02 0.31 16 24 N -1.00 -7.59 3.72 -120.71 -0.45 -8.04 16 25 C 0.12 0.74 11.40 59.85 0.68 1.42 16 26 S 2.59 27.97 5.83 -107.50 -0.63 27.34 16 27 O -0.93 -13.91 17.75 -57.41 -1.02 -14.93 16 28 O -0.94 -12.79 18.14 -57.41 -1.04 -13.83 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.06 0.75 7.75 -51.93 -0.40 0.35 16 36 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.38 10.63 7.67 -40.82 -0.31 10.32 16 41 H 0.25 7.63 8.31 -40.82 -0.34 7.29 16 42 H 0.40 2.65 8.60 -40.82 -0.35 2.30 16 43 H 0.11 0.25 8.14 -51.93 -0.42 -0.17 16 44 H 0.11 0.71 7.29 -51.93 -0.38 0.33 16 45 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 46 H 0.10 0.22 8.14 -51.93 -0.42 -0.20 16 47 H 0.08 0.26 8.11 -51.93 -0.42 -0.16 16 48 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 49 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 412.37 15.07 6.21 6.21 Total: -1.00 -40.25 412.37 -10.45 -50.69 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -8.57 Total: 3.82 kcal Atomic # 6 Polarization: -7.33 SS G_CDS: -0.16 Total: -7.49 kcal Atomic # 7 Polarization: -62.91 SS G_CDS: -0.30 Total: -63.21 kcal Atomic # 8 Polarization: -33.59 SS G_CDS: -1.97 Total: -35.56 kcal Atomic # 14 Polarization: 23.22 SS G_CDS: -5.02 Total: 18.20 kcal Atomic # 16 Polarization: 27.97 SS G_CDS: -0.63 Total: 27.34 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -40.25 -10.45 -50.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175645956.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.393 kcal (2) G-P(sol) polarization free energy of solvation -40.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds