Wall clock time and date at job start Wed Apr 1 2020 05:20:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09002 * 109.47262 * 2 1 4 4 C 1.53009 * 109.46953 * 119.99350 * 2 1 3 5 5 C 1.52996 * 109.46924 * 184.99962 * 4 2 1 6 6 C 1.53009 * 109.46924 * 179.97438 * 5 4 2 7 7 C 1.52996 * 109.46924 * 180.02562 * 6 5 4 8 8 N 1.46504 * 109.46681 * 179.97438 * 7 6 5 9 9 C 1.36943 * 119.99781 * 180.02562 * 8 7 6 10 10 H 1.08002 * 119.99788 * 359.97438 * 9 8 7 11 11 C 1.38811 * 119.99622 * 180.27904 * 9 8 7 12 12 N 1.31614 * 120.00467 * 359.72375 * 11 9 8 13 13 Si 1.86801 * 119.99700 * 179.72266 * 11 9 8 14 14 H 1.48501 * 109.46896 * 89.99850 * 13 11 9 15 15 H 1.48499 * 109.47039 * 210.00011 * 13 11 9 16 16 H 1.48501 * 109.47275 * 329.99811 * 13 11 9 17 17 N 1.46500 * 109.47503 * 239.99398 * 2 1 3 18 18 C 1.34772 * 119.99660 * 85.00420 * 17 2 1 19 19 O 1.21282 * 120.00614 * 359.97438 * 18 17 2 20 20 C 1.50709 * 119.99917 * 180.02562 * 18 17 2 21 21 H 1.09000 * 111.01739 * 25.69228 * 20 18 17 22 22 C 1.55607 * 111.16716 * 149.99528 * 20 18 17 23 23 C 1.54063 * 104.29257 * 155.78557 * 22 20 18 24 24 N 1.47072 * 110.10712 * 314.79560 * 23 22 20 25 25 C 1.46503 * 126.29912 * 209.06456 * 24 23 22 26 26 S 1.67001 * 107.39725 * 29.03604 * 24 23 22 27 27 O 1.42099 * 105.13014 * 241.06927 * 26 24 23 28 28 O 1.42101 * 105.13665 * 111.39403 * 26 24 23 29 29 H 1.09002 * 109.47262 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47649 * 300.00641 * 1 2 3 31 31 H 1.09007 * 109.46982 * 60.00828 * 1 2 3 32 32 H 1.09000 * 109.46573 * 65.00668 * 4 2 1 33 33 H 1.08997 * 109.47029 * 305.00295 * 4 2 1 34 34 H 1.09006 * 109.47179 * 60.00557 * 5 4 2 35 35 H 1.08997 * 109.47540 * 300.00020 * 5 4 2 36 36 H 1.08998 * 109.46895 * 60.00008 * 6 5 4 37 37 H 1.08997 * 109.47029 * 300.00333 * 6 5 4 38 38 H 1.09006 * 109.47179 * 60.00557 * 7 6 5 39 39 H 1.08997 * 109.47540 * 300.00020 * 7 6 5 40 40 H 0.97000 * 120.00410 * 0.02562 * 8 7 6 41 41 H 0.96995 * 120.00147 * 180.02562 * 12 11 9 42 42 H 0.96997 * 120.00125 * 265.00433 * 17 2 1 43 43 H 1.08998 * 110.46645 * 274.49139 * 22 20 18 44 44 H 1.09001 * 110.46424 * 36.95233 * 22 20 18 45 45 H 1.08994 * 109.35695 * 74.97558 * 23 22 20 46 46 H 1.09004 * 109.35685 * 194.62327 * 23 22 20 47 47 H 1.08994 * 109.47296 * 359.97438 * 25 24 23 48 48 H 1.09001 * 109.46762 * 119.98225 * 25 24 23 49 49 H 1.09001 * 109.46697 * 239.97975 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2494 5 6 3.5647 -0.6132 1.3138 6 6 4.0746 -1.3338 2.5636 7 6 5.5994 -1.2253 2.6283 8 7 6.0875 -1.9148 3.8253 9 6 7.4295 -1.9500 4.0957 10 1 8.1280 -1.4699 3.4263 11 6 7.8925 -2.6082 5.2267 12 7 7.0413 -3.1938 6.0421 13 14 9.7237 -2.6630 5.5915 14 1 10.0978 -1.4914 6.4238 15 1 10.0453 -3.9139 6.3244 16 1 10.4838 -2.6272 4.3162 17 7 2.0184 -0.6907 -1.1961 18 6 2.1472 -0.0184 -2.3570 19 8 1.8583 1.1582 -2.4118 20 6 2.6491 -0.7291 -3.5876 21 1 2.4400 -1.7975 -3.5346 22 6 2.0516 -0.1031 -4.8809 23 6 3.0673 -0.4630 -5.9820 24 7 4.4368 -0.2114 -5.5084 25 6 5.5884 0.1517 -6.3380 26 16 4.4373 -0.4150 -3.8508 27 8 4.8218 0.8467 -3.3223 28 8 5.2054 -1.5883 -3.6213 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 1.7516 -1.7714 1.2057 33 1 1.6052 -0.2616 2.1370 34 1 3.8531 0.4371 1.3575 35 1 3.9994 -1.0728 0.4262 36 1 3.7862 -2.3840 2.5205 37 1 3.6399 -0.8738 3.4510 38 1 5.8874 -0.1749 2.6717 39 1 6.0344 -1.6850 1.7410 40 1 5.4602 -2.3463 4.4263 41 1 7.3648 -3.6534 6.8326 42 1 2.2490 -1.6318 -1.1524 43 1 1.0784 -0.5413 -5.1020 44 1 1.9668 0.9786 -4.7767 45 1 2.9622 -1.5168 -6.2399 46 1 2.8732 0.1452 -6.8654 47 1 5.2802 0.2102 -7.3818 48 1 5.9756 1.1192 -6.0186 49 1 6.3662 -0.6044 -6.2308 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001175645956.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:54 Heat of formation + Delta-G solvation = -130.665648 kcal Electronic energy + Delta-G solvation = -29009.327266 eV Core-core repulsion = 24904.425255 eV Total energy + Delta-G solvation = -4104.902011 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 2.31 seconds Orbital eigenvalues (eV) -41.22771 -38.53087 -38.31909 -37.88736 -37.19904 -36.88276 -34.87394 -34.25648 -32.99276 -31.72282 -28.89515 -28.74053 -26.54763 -25.95748 -24.09005 -23.38209 -22.20238 -22.04582 -21.69432 -20.20277 -19.16348 -18.90792 -18.36271 -17.93635 -17.46216 -16.74388 -16.70136 -16.40889 -16.13930 -15.67517 -15.54093 -15.39053 -15.24398 -15.19301 -14.69637 -14.38825 -14.25704 -14.13730 -14.06332 -13.89239 -13.43277 -13.30635 -13.30182 -13.09990 -12.92579 -12.89742 -12.86258 -12.48910 -12.44163 -12.32826 -12.24463 -12.17720 -11.91801 -11.86939 -11.73478 -11.55239 -11.44128 -11.17868 -10.96937 -10.24922 -10.04464 -9.04607 -7.99104 -5.28622 -1.20197 1.32608 1.38635 1.44563 1.46963 1.55804 1.83080 2.39516 2.53298 2.78212 3.12801 3.33839 3.39195 3.51781 3.61554 3.87187 3.97502 4.00712 4.08363 4.11288 4.27357 4.32175 4.37537 4.56796 4.60886 4.61115 4.69370 4.73288 4.78030 4.84166 4.88572 4.88766 4.94768 4.95814 4.97771 5.01448 5.05793 5.23747 5.31827 5.35857 5.42622 5.47765 5.49179 5.55335 6.24039 6.28887 6.96148 7.29729 8.04987 8.30146 9.24470 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011540 B = 0.002417 C = 0.002060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2425.861677 B =11579.580292 C =13590.738193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.137 3.863 3 H 0.070 0.930 4 C -0.118 4.118 5 C -0.115 4.115 6 C -0.111 4.111 7 C 0.144 3.856 8 N -0.747 5.747 9 C -0.254 4.254 10 H 0.070 0.930 11 C -0.074 4.074 12 N -0.968 5.968 13 Si 0.976 3.024 14 H -0.285 1.285 15 H -0.290 1.290 16 H -0.272 1.272 17 N -0.710 5.710 18 C 0.531 3.469 19 O -0.547 6.547 20 C -0.578 4.578 21 H 0.210 0.790 22 C -0.106 4.106 23 C 0.074 3.926 24 N -0.996 5.996 25 C 0.110 3.890 26 S 2.570 3.430 27 O -0.990 6.990 28 O -0.980 6.980 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.049 0.951 32 H 0.091 0.909 33 H 0.094 0.906 34 H 0.055 0.945 35 H 0.058 0.942 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.011 0.989 39 H 0.013 0.987 40 H 0.376 0.624 41 H 0.254 0.746 42 H 0.417 0.583 43 H 0.154 0.846 44 H 0.090 0.910 45 H 0.107 0.893 46 H 0.124 0.876 47 H 0.118 0.882 48 H 0.053 0.947 49 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.999 3.782 -30.415 36.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.033 3.967 3 H 0.088 0.912 4 C -0.155 4.155 5 C -0.154 4.154 6 C -0.149 4.149 7 C 0.018 3.982 8 N -0.390 5.390 9 C -0.385 4.385 10 H 0.088 0.912 11 C -0.267 4.267 12 N -0.619 5.619 13 Si 0.804 3.196 14 H -0.212 1.212 15 H -0.216 1.216 16 H -0.197 1.197 17 N -0.364 5.364 18 C 0.314 3.686 19 O -0.425 6.425 20 C -0.692 4.692 21 H 0.227 0.773 22 C -0.145 4.145 23 C -0.051 4.051 24 N -0.842 5.842 25 C -0.033 4.033 26 S 2.667 3.333 27 O -0.979 6.979 28 O -0.969 6.969 29 H 0.094 0.906 30 H 0.096 0.904 31 H 0.068 0.932 32 H 0.110 0.890 33 H 0.112 0.888 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.029 0.971 39 H 0.031 0.969 40 H 0.208 0.792 41 H 0.062 0.938 42 H 0.254 0.746 43 H 0.172 0.828 44 H 0.109 0.891 45 H 0.125 0.875 46 H 0.142 0.858 47 H 0.136 0.864 48 H 0.071 0.929 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -18.118 4.736 -29.915 35.293 hybrid contribution 0.701 -0.567 0.663 1.119 sum -17.417 4.169 -29.252 34.299 Atomic orbital electron populations 1.22096 0.93193 1.03330 1.02647 1.21150 0.95338 0.96797 0.83419 0.91194 1.21888 0.94018 1.02516 0.97103 1.21531 0.96552 1.00282 0.96991 1.21592 0.93453 1.01179 0.98676 1.20883 0.94599 0.94265 0.88469 1.42591 1.04566 1.65428 1.26426 1.19649 0.85331 1.27896 1.05666 0.91188 1.25606 1.02388 1.00946 0.97729 1.69806 1.34712 1.41693 1.15639 0.85107 0.79700 0.76886 0.77874 1.21159 1.21571 1.19670 1.46155 1.66156 1.14960 1.09105 1.19358 0.78718 0.86559 0.83949 1.90747 1.50310 1.16579 1.84818 1.30891 1.23017 1.13192 1.02087 0.77310 1.22874 1.02277 1.03124 0.86272 1.22485 0.77891 1.05076 0.99639 1.56998 1.15921 1.86911 1.24393 1.21539 0.85419 0.99647 0.96723 1.06320 0.77559 0.74196 0.75199 1.93595 1.81235 1.43727 1.79307 1.93608 1.67331 1.51018 1.84967 0.90594 0.90354 0.93216 0.89031 0.88801 0.92656 0.92316 0.91412 0.91838 0.97051 0.96907 0.79230 0.93771 0.74574 0.82829 0.89144 0.87463 0.85801 0.86399 0.92859 0.92206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 48. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.48 71.98 0.68 -1.45 16 2 C 0.14 2.43 2.57 44.99 0.12 2.55 16 3 H 0.07 1.61 7.58 -2.39 -0.02 1.59 16 4 C -0.12 -2.05 4.75 30.60 0.15 -1.90 16 5 C -0.12 -2.93 5.10 30.60 0.16 -2.77 16 6 C -0.11 -3.60 5.33 30.60 0.16 -3.43 16 7 C 0.14 6.31 6.26 86.38 0.54 6.86 16 8 N -0.75 -40.75 5.60 -343.44 -1.92 -42.68 16 9 C -0.25 -15.15 9.99 84.03 0.84 -14.31 16 10 H 0.07 4.08 7.83 -2.91 -0.02 4.06 16 11 C -0.07 -4.46 5.50 84.86 0.47 -3.99 16 12 N -0.97 -60.92 13.06 21.65 0.28 -60.64 16 13 Si 0.98 47.94 29.55 68.60 2.03 49.96 16 14 H -0.28 -13.67 7.11 99.48 0.71 -12.96 16 15 H -0.29 -14.03 7.11 99.48 0.71 -13.33 16 16 H -0.27 -12.77 7.11 99.48 0.71 -12.07 16 17 N -0.71 -11.63 4.53 -442.52 -2.00 -13.64 16 18 C 0.53 10.42 6.75 87.66 0.59 11.01 16 19 O -0.55 -14.99 15.63 -3.03 -0.05 -15.04 16 20 C -0.58 -7.09 3.71 30.75 0.11 -6.98 16 21 H 0.21 0.63 8.14 -2.39 -0.02 0.61 16 22 C -0.11 -0.72 6.16 31.85 0.20 -0.52 16 23 C 0.07 0.36 6.81 86.63 0.59 0.95 16 24 N -1.00 -14.14 3.72 -535.80 -1.99 -16.13 16 25 C 0.11 1.28 11.40 127.77 1.46 2.73 16 26 S 2.57 56.67 5.83 -56.49 -0.33 56.34 16 27 O -0.99 -32.02 17.75 -127.77 -2.27 -34.29 16 28 O -0.98 -27.57 18.14 -127.77 -2.32 -29.89 16 29 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.05 0.80 8.14 -2.38 -0.02 0.79 16 32 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.05 1.52 8.14 -2.38 -0.02 1.50 16 35 H 0.06 1.48 7.75 -2.39 -0.02 1.46 16 36 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 37 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 38 H 0.01 0.52 8.14 -2.38 -0.02 0.50 16 39 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 40 H 0.38 21.21 7.67 -92.71 -0.71 20.50 16 41 H 0.25 15.31 8.31 -92.71 -0.77 14.54 16 42 H 0.42 4.52 8.60 -92.71 -0.80 3.72 16 43 H 0.15 -0.08 8.14 -2.39 -0.02 -0.10 16 44 H 0.09 1.05 7.29 -2.39 -0.02 1.04 16 45 H 0.11 -0.01 8.14 -2.39 -0.02 -0.03 16 46 H 0.12 0.05 8.14 -2.39 -0.02 0.03 16 47 H 0.12 0.48 8.11 -2.39 -0.02 0.46 16 48 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 49 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 Total: -1.00 -91.35 412.37 -3.08 -94.43 By element: Atomic # 1 Polarization: 23.40 SS G_CDS: -0.57 Total: 22.83 kcal Atomic # 6 Polarization: -17.32 SS G_CDS: 6.06 Total: -11.26 kcal Atomic # 7 Polarization: -127.45 SS G_CDS: -5.64 Total: -133.09 kcal Atomic # 8 Polarization: -74.59 SS G_CDS: -4.63 Total: -79.22 kcal Atomic # 14 Polarization: 47.94 SS G_CDS: 2.03 Total: 49.96 kcal Atomic # 16 Polarization: 56.67 SS G_CDS: -0.33 Total: 56.34 kcal Total: -91.35 -3.08 -94.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175645956.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.240 kcal (2) G-P(sol) polarization free energy of solvation -91.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.31 seconds