Wall clock time and date at job start Wed Apr 1 2020 05:21:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47098 * 2 1 4 4 C 1.53004 * 109.47083 * 120.00077 * 2 1 3 5 5 C 1.53003 * 109.46807 * 184.99648 * 4 2 1 6 6 C 1.53004 * 109.46807 * 179.97438 * 5 4 2 7 7 C 1.52999 * 109.46906 * 180.02562 * 6 5 4 8 8 N 1.46500 * 109.47120 * 180.02562 * 7 6 5 9 9 C 1.36932 * 120.00302 * 180.02562 * 8 7 6 10 10 H 1.08001 * 119.99762 * 359.97438 * 9 8 7 11 11 C 1.38812 * 120.00497 * 179.97438 * 9 8 7 12 12 N 1.31622 * 119.99667 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00402 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.46675 * 89.99720 * 13 11 9 15 15 H 1.48494 * 109.47198 * 209.99579 * 13 11 9 16 16 H 1.48497 * 109.47038 * 330.00110 * 13 11 9 17 17 N 1.46498 * 109.47257 * 240.00065 * 2 1 3 18 18 C 1.34777 * 119.99828 * 84.72116 * 17 2 1 19 19 O 1.21283 * 120.00222 * 0.28168 * 18 17 2 20 20 C 1.50703 * 120.00290 * 180.27728 * 18 17 2 21 21 H 1.09005 * 111.01928 * 335.70827 * 20 18 17 22 22 C 1.55598 * 111.17060 * 211.39792 * 20 18 17 23 23 C 1.54058 * 104.29670 * 204.21632 * 22 20 18 24 24 N 1.47064 * 110.11009 * 45.19959 * 23 22 20 25 25 C 1.46502 * 126.30061 * 151.00430 * 24 23 22 26 26 S 1.67091 * 107.39903 * 330.93158 * 24 23 22 27 27 O 1.42098 * 105.17230 * 248.65522 * 26 24 23 28 28 O 1.42101 * 105.12555 * 118.96471 * 26 24 23 29 29 H 1.08996 * 109.47245 * 59.99861 * 1 2 3 30 30 H 1.08995 * 109.47098 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47054 * 299.99648 * 1 2 3 32 32 H 1.08993 * 109.47108 * 304.99684 * 4 2 1 33 33 H 1.08998 * 109.47048 * 65.00196 * 4 2 1 34 34 H 1.08988 * 109.47304 * 300.00405 * 5 4 2 35 35 H 1.08998 * 109.46869 * 60.00439 * 5 4 2 36 36 H 1.09002 * 109.47337 * 300.00120 * 6 5 4 37 37 H 1.08998 * 109.47048 * 60.00548 * 6 5 4 38 38 H 1.09002 * 109.46788 * 299.99926 * 7 6 5 39 39 H 1.08998 * 109.47252 * 60.00143 * 7 6 5 40 40 H 0.97005 * 120.00133 * 359.97438 * 8 7 6 41 41 H 0.96996 * 120.00098 * 179.97438 * 12 11 9 42 42 H 0.97001 * 120.00384 * 265.00562 * 17 2 1 43 43 H 1.09004 * 110.46785 * 322.91942 * 22 20 18 44 44 H 1.09006 * 110.46785 * 85.50851 * 22 20 18 45 45 H 1.08999 * 109.35695 * 165.38448 * 23 22 20 46 46 H 1.08999 * 109.35504 * 285.01890 * 23 22 20 47 47 H 1.08998 * 109.47108 * 359.97417 * 25 24 23 48 48 H 1.08998 * 109.47016 * 119.97622 * 25 24 23 49 49 H 1.08998 * 109.47136 * 239.97424 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5649 -0.6134 1.3136 6 6 4.0748 -1.3341 2.5632 7 6 5.5996 -1.2256 2.6279 8 7 6.0880 -1.9162 3.8240 9 6 7.4299 -1.9518 4.0943 10 1 8.1283 -1.4710 3.4253 11 6 7.8926 -2.6057 5.2279 12 7 7.0414 -3.1912 6.0434 13 14 9.7233 -2.6548 5.5961 14 1 10.0929 -1.4799 6.4259 15 1 10.0467 -3.9027 6.3331 16 1 10.4855 -2.6204 4.3222 17 7 2.0184 -0.6906 -1.1962 18 6 2.1417 -0.0196 -2.3585 19 8 1.8533 1.1572 -2.4129 20 6 2.6382 -0.7314 -3.5905 21 1 3.2390 -1.6011 -3.3242 22 6 3.4295 0.2356 -4.5177 23 6 3.3173 -0.4011 -5.9161 24 7 1.9322 -0.8261 -6.1685 25 6 1.2747 -0.9086 -7.4751 26 16 1.2469 -1.1994 -4.6910 27 8 1.0592 -2.6077 -4.7133 28 8 0.1550 -0.3008 -4.5511 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6054 -0.2618 2.1369 33 1 1.7517 -1.7715 1.2056 34 1 3.9994 -1.0728 0.4259 35 1 3.8532 0.4369 1.3573 36 1 3.6402 -0.8742 3.4508 37 1 3.7865 -2.3844 2.5200 38 1 6.0345 -1.6853 1.7404 39 1 5.8876 -0.1753 2.6713 40 1 5.4606 -2.3478 4.4251 41 1 7.3647 -3.6484 6.8354 42 1 2.2490 -1.6318 -1.1527 43 1 2.9747 1.2262 -4.5124 44 1 4.4729 0.2927 -4.2074 45 1 3.6147 0.3278 -6.6699 46 1 3.9768 -1.2671 -5.9726 47 1 1.9737 -0.6027 -8.2535 48 1 0.9549 -1.9346 -7.6567 49 1 0.4064 -0.2498 -7.4872 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001175645958.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:15 Heat of formation + Delta-G solvation = -99.565634 kcal Electronic energy + Delta-G solvation = -28656.345053 eV Core-core repulsion = 24552.791640 eV Total energy + Delta-G solvation = -4103.553413 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -40.44123 -37.88745 -37.54818 -37.00075 -36.40447 -35.33515 -33.74909 -33.27680 -31.65441 -30.35345 -28.27800 -27.48488 -26.06033 -24.31238 -23.24371 -22.19783 -21.30759 -20.92688 -20.70359 -19.50107 -18.23952 -17.78823 -17.27738 -17.01985 -16.63372 -15.96053 -15.67156 -15.20524 -14.93026 -14.91331 -14.74571 -14.46503 -14.04328 -13.82236 -13.71018 -13.58697 -13.43937 -13.17675 -12.99524 -12.97563 -12.59050 -12.56187 -12.46020 -12.37637 -12.03117 -11.81111 -11.70054 -11.53443 -11.33574 -11.13935 -11.02921 -10.83270 -10.75025 -10.46380 -10.39207 -10.31867 -10.01363 -9.69398 -9.58757 -9.44088 -8.87237 -6.91820 -5.76661 -3.05224 -0.50597 1.89802 2.12971 2.52802 3.03450 3.25391 3.42954 3.47686 3.49678 3.77232 3.83910 4.17228 4.31835 4.44842 4.54214 4.59176 4.63547 4.82108 4.91755 4.97115 5.02134 5.08336 5.21104 5.23355 5.29736 5.33542 5.36129 5.41374 5.52250 5.56469 5.64414 5.73168 5.83440 5.93275 5.93843 6.06439 6.09594 6.26336 6.27701 6.35775 6.42925 6.86684 6.90695 7.00034 7.68747 7.69309 8.42665 9.53333 10.12506 10.46950 11.46380 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016366 B = 0.001901 C = 0.001784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.497473 B =14724.291052 C =15693.159765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.139 3.861 3 H 0.094 0.906 4 C -0.128 4.128 5 C -0.115 4.115 6 C -0.126 4.126 7 C 0.153 3.847 8 N -0.735 5.735 9 C -0.239 4.239 10 H 0.070 0.930 11 C -0.016 4.016 12 N -0.934 5.934 13 Si 0.908 3.092 14 H -0.290 1.290 15 H -0.291 1.291 16 H -0.282 1.282 17 N -0.716 5.716 18 C 0.539 3.461 19 O -0.508 6.508 20 C -0.602 4.602 21 H 0.167 0.833 22 C -0.109 4.109 23 C 0.080 3.920 24 N -0.997 5.997 25 C 0.122 3.878 26 S 2.591 3.409 27 O -0.944 6.944 28 O -0.933 6.933 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.070 0.930 34 H 0.060 0.940 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.015 0.985 39 H 0.016 0.984 40 H 0.383 0.617 41 H 0.255 0.745 42 H 0.404 0.596 43 H 0.110 0.890 44 H 0.118 0.882 45 H 0.098 0.902 46 H 0.079 0.921 47 H 0.082 0.918 48 H 0.062 0.938 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.650 5.805 -27.603 31.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.036 3.964 3 H 0.112 0.888 4 C -0.166 4.166 5 C -0.153 4.153 6 C -0.164 4.164 7 C 0.025 3.975 8 N -0.379 5.379 9 C -0.370 4.370 10 H 0.088 0.912 11 C -0.212 4.212 12 N -0.583 5.583 13 Si 0.739 3.261 14 H -0.217 1.217 15 H -0.217 1.217 16 H -0.208 1.208 17 N -0.368 5.368 18 C 0.321 3.679 19 O -0.383 6.383 20 C -0.712 4.712 21 H 0.185 0.815 22 C -0.149 4.149 23 C -0.046 4.046 24 N -0.841 5.841 25 C -0.022 4.022 26 S 2.683 3.317 27 O -0.933 6.933 28 O -0.922 6.922 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.090 0.910 32 H 0.102 0.898 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.033 0.967 39 H 0.034 0.966 40 H 0.217 0.783 41 H 0.065 0.935 42 H 0.239 0.761 43 H 0.128 0.872 44 H 0.136 0.864 45 H 0.117 0.883 46 H 0.097 0.903 47 H 0.101 0.899 48 H 0.081 0.919 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -14.648 6.304 -27.556 31.838 hybrid contribution 1.800 -0.562 0.584 1.974 sum -12.848 5.743 -26.972 30.423 Atomic orbital electron populations 1.22244 0.94966 1.02529 1.03083 1.21186 0.94082 0.97860 0.83292 0.88813 1.21969 0.96947 1.01124 0.96588 1.21535 0.93883 1.01180 0.98706 1.21732 0.97275 1.00322 0.97080 1.20643 0.90981 0.95302 0.90570 1.42389 1.05357 1.64958 1.25194 1.19244 0.83923 1.28422 1.05458 0.91250 1.24761 0.97765 1.00963 0.97718 1.69662 1.32786 1.40743 1.15110 0.86171 0.85036 0.77035 0.77848 1.21717 1.21749 1.20788 1.46140 1.66861 1.14434 1.09411 1.18896 0.78558 0.87160 0.83325 1.90766 1.48574 1.14800 1.84127 1.31011 1.21284 1.10636 1.08308 0.81531 1.22708 1.03640 0.98833 0.89680 1.22154 0.83731 1.01200 0.97556 1.57102 1.21629 1.84165 1.21156 1.21312 0.97374 1.01726 0.81801 1.06136 0.74875 0.75029 0.75706 1.93641 1.84029 1.30494 1.85172 1.93651 1.48366 1.65499 1.84692 0.91807 0.92216 0.91018 0.89822 0.91092 0.92157 0.91895 0.91980 0.92062 0.96687 0.96602 0.78330 0.93525 0.76090 0.87157 0.86396 0.88328 0.90288 0.89935 0.91941 0.91853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.54 9.48 37.16 0.35 -1.19 16 2 C 0.14 1.31 2.57 -67.93 -0.17 1.14 16 3 H 0.09 1.01 7.58 -51.93 -0.39 0.61 16 4 C -0.13 -1.19 4.75 -26.73 -0.13 -1.31 16 5 C -0.11 -1.33 5.10 -26.73 -0.14 -1.47 16 6 C -0.13 -1.94 5.33 -26.73 -0.14 -2.08 16 7 C 0.15 3.08 6.26 -4.04 -0.03 3.05 16 8 N -0.73 -19.00 5.60 -59.91 -0.34 -19.33 16 9 C -0.24 -6.82 9.99 -15.06 -0.15 -6.97 16 10 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 11 C -0.02 -0.48 5.50 -17.43 -0.10 -0.57 16 12 N -0.93 -28.53 13.06 55.49 0.72 -27.81 16 13 Si 0.91 22.55 29.55 -169.99 -5.02 17.53 16 14 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 15 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 16 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 17 N -0.72 -6.31 4.53 -53.81 -0.24 -6.55 16 18 C 0.54 5.47 6.73 -10.98 -0.07 5.39 16 19 O -0.51 -6.85 15.67 5.55 0.09 -6.76 16 20 C -0.60 -4.20 3.70 -26.50 -0.10 -4.30 16 21 H 0.17 0.62 8.14 -51.93 -0.42 0.20 16 22 C -0.11 -0.56 6.17 -24.80 -0.15 -0.72 16 23 C 0.08 0.32 6.81 -3.18 -0.02 0.30 16 24 N -1.00 -6.77 3.72 -120.72 -0.45 -7.22 16 25 C 0.12 0.61 11.40 59.85 0.68 1.30 16 26 S 2.59 24.44 5.84 -107.50 -0.63 23.81 16 27 O -0.94 -11.13 18.14 -57.41 -1.04 -12.17 16 28 O -0.93 -12.26 17.75 -57.41 -1.02 -13.28 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.66 7.75 -51.94 -0.40 0.26 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16 39 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.38 10.34 7.67 -40.82 -0.31 10.03 16 41 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 42 H 0.40 2.61 8.60 -40.82 -0.35 2.26 16 43 H 0.11 0.73 7.31 -51.93 -0.38 0.35 16 44 H 0.12 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.10 0.23 8.14 -51.93 -0.42 -0.20 16 46 H 0.08 0.20 8.14 -51.93 -0.42 -0.23 16 47 H 0.08 0.21 8.11 -51.93 -0.42 -0.22 16 48 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 49 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 LS Contribution 412.41 15.07 6.21 6.21 Total: -1.00 -38.92 412.41 -10.45 -49.37 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -8.57 Total: 3.64 kcal Atomic # 6 Polarization: -7.27 SS G_CDS: -0.16 Total: -7.43 kcal Atomic # 7 Polarization: -60.61 SS G_CDS: -0.30 Total: -60.91 kcal Atomic # 8 Polarization: -30.23 SS G_CDS: -1.97 Total: -32.21 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.53 kcal Atomic # 16 Polarization: 24.44 SS G_CDS: -0.63 Total: 23.81 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -38.92 -10.45 -49.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175645958.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.200 kcal (2) G-P(sol) polarization free energy of solvation -38.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds