Wall clock time and date at job start Wed Apr 1 2020 05:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47098 * 2 1 4 4 C 1.53004 * 109.47083 * 120.00077 * 2 1 3 5 5 C 1.53003 * 109.46807 * 184.99648 * 4 2 1 6 6 C 1.53004 * 109.46807 * 179.97438 * 5 4 2 7 7 C 1.52999 * 109.46906 * 180.02562 * 6 5 4 8 8 N 1.46500 * 109.47120 * 180.02562 * 7 6 5 9 9 C 1.36932 * 120.00302 * 180.02562 * 8 7 6 10 10 H 1.08001 * 119.99762 * 359.97438 * 9 8 7 11 11 C 1.38812 * 120.00497 * 179.97438 * 9 8 7 12 12 N 1.31622 * 119.99667 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00402 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.46675 * 89.99720 * 13 11 9 15 15 H 1.48494 * 109.47198 * 209.99579 * 13 11 9 16 16 H 1.48497 * 109.47038 * 330.00110 * 13 11 9 17 17 N 1.46498 * 109.47257 * 240.00065 * 2 1 3 18 18 C 1.34777 * 119.99828 * 84.72116 * 17 2 1 19 19 O 1.21283 * 120.00222 * 0.28168 * 18 17 2 20 20 C 1.50703 * 120.00290 * 180.27728 * 18 17 2 21 21 H 1.09005 * 111.01928 * 335.70827 * 20 18 17 22 22 C 1.55598 * 111.17060 * 211.39792 * 20 18 17 23 23 C 1.54058 * 104.29670 * 204.21632 * 22 20 18 24 24 N 1.47064 * 110.11009 * 45.19959 * 23 22 20 25 25 C 1.46502 * 126.30061 * 151.00430 * 24 23 22 26 26 S 1.67091 * 107.39903 * 330.93158 * 24 23 22 27 27 O 1.42098 * 105.17230 * 248.65522 * 26 24 23 28 28 O 1.42101 * 105.12555 * 118.96471 * 26 24 23 29 29 H 1.08996 * 109.47245 * 59.99861 * 1 2 3 30 30 H 1.08995 * 109.47098 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47054 * 299.99648 * 1 2 3 32 32 H 1.08993 * 109.47108 * 304.99684 * 4 2 1 33 33 H 1.08998 * 109.47048 * 65.00196 * 4 2 1 34 34 H 1.08988 * 109.47304 * 300.00405 * 5 4 2 35 35 H 1.08998 * 109.46869 * 60.00439 * 5 4 2 36 36 H 1.09002 * 109.47337 * 300.00120 * 6 5 4 37 37 H 1.08998 * 109.47048 * 60.00548 * 6 5 4 38 38 H 1.09002 * 109.46788 * 299.99926 * 7 6 5 39 39 H 1.08998 * 109.47252 * 60.00143 * 7 6 5 40 40 H 0.97005 * 120.00133 * 359.97438 * 8 7 6 41 41 H 0.96996 * 120.00098 * 179.97438 * 12 11 9 42 42 H 0.97001 * 120.00384 * 265.00562 * 17 2 1 43 43 H 1.09004 * 110.46785 * 322.91942 * 22 20 18 44 44 H 1.09006 * 110.46785 * 85.50851 * 22 20 18 45 45 H 1.08999 * 109.35695 * 165.38448 * 23 22 20 46 46 H 1.08999 * 109.35504 * 285.01890 * 23 22 20 47 47 H 1.08998 * 109.47108 * 359.97417 * 25 24 23 48 48 H 1.08998 * 109.47016 * 119.97622 * 25 24 23 49 49 H 1.08998 * 109.47136 * 239.97424 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5649 -0.6134 1.3136 6 6 4.0748 -1.3341 2.5632 7 6 5.5996 -1.2256 2.6279 8 7 6.0880 -1.9162 3.8240 9 6 7.4299 -1.9518 4.0943 10 1 8.1283 -1.4710 3.4253 11 6 7.8926 -2.6057 5.2279 12 7 7.0414 -3.1912 6.0434 13 14 9.7233 -2.6548 5.5961 14 1 10.0929 -1.4799 6.4259 15 1 10.0467 -3.9027 6.3331 16 1 10.4855 -2.6204 4.3222 17 7 2.0184 -0.6906 -1.1962 18 6 2.1417 -0.0196 -2.3585 19 8 1.8533 1.1572 -2.4129 20 6 2.6382 -0.7314 -3.5905 21 1 3.2390 -1.6011 -3.3242 22 6 3.4295 0.2356 -4.5177 23 6 3.3173 -0.4011 -5.9161 24 7 1.9322 -0.8261 -6.1685 25 6 1.2747 -0.9086 -7.4751 26 16 1.2469 -1.1994 -4.6910 27 8 1.0592 -2.6077 -4.7133 28 8 0.1550 -0.3008 -4.5511 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6054 -0.2618 2.1369 33 1 1.7517 -1.7715 1.2056 34 1 3.9994 -1.0728 0.4259 35 1 3.8532 0.4369 1.3573 36 1 3.6402 -0.8742 3.4508 37 1 3.7865 -2.3844 2.5200 38 1 6.0345 -1.6853 1.7404 39 1 5.8876 -0.1753 2.6713 40 1 5.4606 -2.3478 4.4251 41 1 7.3647 -3.6484 6.8354 42 1 2.2490 -1.6318 -1.1527 43 1 2.9747 1.2262 -4.5124 44 1 4.4729 0.2927 -4.2074 45 1 3.6147 0.3278 -6.6699 46 1 3.9768 -1.2671 -5.9726 47 1 1.9737 -0.6027 -8.2535 48 1 0.9549 -1.9346 -7.6567 49 1 0.4064 -0.2498 -7.4872 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001175645958.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:59 Heat of formation + Delta-G solvation = -130.398197 kcal Electronic energy + Delta-G solvation = -28657.682053 eV Core-core repulsion = 24552.791640 eV Total energy + Delta-G solvation = -4104.890413 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 16.05 seconds Orbital eigenvalues (eV) -41.22063 -38.51600 -38.30855 -37.86933 -37.20387 -36.85520 -34.84054 -34.24282 -32.96564 -31.71117 -28.86965 -28.74568 -26.53443 -25.93246 -24.08649 -23.34471 -22.17259 -21.98058 -21.69743 -20.19451 -19.12556 -18.90877 -18.40876 -17.91352 -17.39362 -16.71582 -16.65538 -16.29092 -16.23491 -15.66501 -15.52925 -15.42251 -15.26130 -15.09874 -14.68539 -14.35435 -14.23026 -14.16062 -14.07223 -13.87302 -13.42523 -13.30225 -13.28873 -13.08359 -12.91888 -12.90307 -12.84505 -12.47542 -12.44953 -12.30916 -12.24520 -12.15175 -11.88944 -11.83140 -11.73589 -11.49328 -11.41378 -11.16350 -10.93475 -10.25177 -10.03448 -9.01035 -7.96348 -5.25543 -1.18884 1.31997 1.38405 1.46872 1.49025 1.57530 1.83891 2.37286 2.55510 2.78814 3.13996 3.37060 3.38510 3.53348 3.63818 3.88143 3.99544 4.05315 4.10554 4.14789 4.27311 4.33229 4.38811 4.59212 4.62741 4.63708 4.71017 4.73758 4.78821 4.86470 4.90403 4.91303 4.95131 4.97126 5.01488 5.01944 5.08826 5.25482 5.29692 5.38329 5.46390 5.52227 5.54210 5.55017 6.26569 6.29759 6.96997 7.32151 8.09511 8.32130 9.27248 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016366 B = 0.001901 C = 0.001784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.497473 B =14724.291052 C =15693.159765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.141 3.859 3 H 0.079 0.921 4 C -0.118 4.118 5 C -0.106 4.106 6 C -0.114 4.114 7 C 0.148 3.852 8 N -0.750 5.750 9 C -0.249 4.249 10 H 0.075 0.925 11 C -0.079 4.079 12 N -0.970 5.970 13 Si 0.976 3.024 14 H -0.287 1.287 15 H -0.294 1.294 16 H -0.268 1.268 17 N -0.710 5.710 18 C 0.531 3.469 19 O -0.548 6.548 20 C -0.584 4.584 21 H 0.205 0.795 22 C -0.109 4.109 23 C 0.075 3.925 24 N -0.997 5.997 25 C 0.110 3.890 26 S 2.584 3.416 27 O -0.976 6.976 28 O -0.984 6.984 29 H 0.041 0.959 30 H 0.069 0.931 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.071 0.929 35 H 0.059 0.941 36 H 0.056 0.944 37 H 0.062 0.938 38 H 0.020 0.980 39 H 0.014 0.986 40 H 0.374 0.626 41 H 0.252 0.748 42 H 0.417 0.583 43 H 0.091 0.909 44 H 0.146 0.854 45 H 0.122 0.878 46 H 0.105 0.895 47 H 0.114 0.886 48 H 0.062 0.938 49 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.967 5.593 -28.938 31.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.038 3.962 3 H 0.098 0.902 4 C -0.156 4.156 5 C -0.144 4.144 6 C -0.152 4.152 7 C 0.022 3.978 8 N -0.393 5.393 9 C -0.380 4.380 10 H 0.093 0.907 11 C -0.271 4.271 12 N -0.620 5.620 13 Si 0.805 3.195 14 H -0.214 1.214 15 H -0.220 1.220 16 H -0.193 1.193 17 N -0.364 5.364 18 C 0.315 3.685 19 O -0.425 6.425 20 C -0.697 4.697 21 H 0.222 0.778 22 C -0.148 4.148 23 C -0.049 4.049 24 N -0.842 5.842 25 C -0.033 4.033 26 S 2.679 3.321 27 O -0.966 6.966 28 O -0.973 6.973 29 H 0.060 0.940 30 H 0.088 0.912 31 H 0.102 0.898 32 H 0.108 0.892 33 H 0.103 0.897 34 H 0.089 0.911 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.038 0.962 39 H 0.032 0.968 40 H 0.205 0.795 41 H 0.061 0.939 42 H 0.254 0.746 43 H 0.110 0.890 44 H 0.164 0.836 45 H 0.140 0.860 46 H 0.123 0.877 47 H 0.132 0.868 48 H 0.081 0.919 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -12.991 6.081 -28.945 32.305 hybrid contribution 1.287 -0.438 0.958 1.663 sum -11.705 5.644 -27.987 30.857 Atomic orbital electron populations 1.22224 0.94714 1.03074 1.02614 1.21099 0.94243 0.97296 0.83604 0.90246 1.21871 0.95092 1.02036 0.96618 1.21443 0.95437 1.00430 0.97072 1.21610 0.93830 1.00940 0.98787 1.20866 0.94167 0.94302 0.88488 1.42651 1.04537 1.65383 1.26699 1.19661 0.85361 1.27627 1.05390 0.90732 1.25630 1.02294 1.01277 0.97884 1.69818 1.34712 1.41946 1.15572 0.85100 0.79832 0.76650 0.77941 1.21397 1.22032 1.19296 1.46155 1.66127 1.15054 1.09023 1.19366 0.77996 0.86903 0.84283 1.90751 1.50203 1.16675 1.84858 1.30929 1.20176 1.12223 1.06391 0.77773 1.22851 1.04582 0.97458 0.89940 1.22428 0.82349 1.02860 0.97297 1.57005 1.22737 1.84073 1.20410 1.21548 0.98144 1.01843 0.81776 1.05989 0.75236 0.74045 0.76781 1.93598 1.85028 1.31975 1.85958 1.93591 1.51752 1.66264 1.85742 0.94003 0.91152 0.89798 0.89247 0.89694 0.91079 0.92266 0.92550 0.91928 0.96186 0.96833 0.79472 0.93948 0.74554 0.89038 0.83626 0.85975 0.87714 0.86791 0.91900 0.92576 Number of geometries 1 Number of calculations of the screened coulomb radii 3 The total number of SCF iterations 341. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.94 9.48 71.98 0.68 -2.25 16 2 C 0.14 2.50 2.57 44.99 0.12 2.62 16 3 H 0.08 1.67 7.58 -2.39 -0.02 1.65 16 4 C -0.12 -1.93 4.75 30.60 0.15 -1.78 16 5 C -0.11 -2.22 5.10 30.60 0.16 -2.06 16 6 C -0.11 -3.32 5.33 30.60 0.16 -3.16 16 7 C 0.15 5.80 6.26 86.38 0.54 6.34 16 8 N -0.75 -38.58 5.60 -343.46 -1.92 -40.51 16 9 C -0.25 -14.05 9.99 84.03 0.84 -13.21 16 10 H 0.07 4.04 7.83 -2.91 -0.02 4.02 16 11 C -0.08 -4.56 5.50 84.86 0.47 -4.09 16 12 N -0.97 -59.61 13.06 21.65 0.28 -59.33 16 13 Si 0.98 46.06 29.55 68.60 2.03 48.09 16 14 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 15 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 16 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 17 N -0.71 -11.49 4.53 -442.53 -2.00 -13.50 16 18 C 0.53 10.35 6.73 87.66 0.59 10.94 16 19 O -0.55 -14.96 15.67 -3.04 -0.05 -15.01 16 20 C -0.58 -7.12 3.70 30.74 0.11 -7.01 16 21 H 0.21 0.82 8.14 -2.38 -0.02 0.80 16 22 C -0.11 -0.87 6.17 31.85 0.20 -0.67 16 23 C 0.08 0.38 6.81 86.63 0.59 0.97 16 24 N -1.00 -12.21 3.72 -535.83 -1.99 -14.20 16 25 C 0.11 0.99 11.40 127.77 1.46 2.45 16 26 S 2.58 48.46 5.84 -56.49 -0.33 48.13 16 27 O -0.98 -23.01 18.14 -127.77 -2.32 -25.33 16 28 O -0.98 -27.37 17.75 -127.77 -2.27 -29.64 16 29 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.09 1.40 8.14 -2.39 -0.02 1.39 16 33 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.07 1.35 7.75 -2.39 -0.02 1.33 16 35 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 40 H 0.37 20.31 7.67 -92.70 -0.71 19.60 16 41 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 42 H 0.42 4.42 8.60 -92.71 -0.80 3.62 16 43 H 0.09 1.14 7.31 -2.38 -0.02 1.12 16 44 H 0.15 0.40 8.14 -2.38 -0.02 0.38 16 45 H 0.12 0.12 8.14 -2.39 -0.02 0.10 16 46 H 0.10 0.08 8.14 -2.39 -0.02 0.06 16 47 H 0.11 0.28 8.11 -2.39 -0.02 0.26 16 48 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 49 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 Total: -1.00 -86.12 412.41 -3.08 -89.21 By element: Atomic # 1 Polarization: 23.58 SS G_CDS: -0.57 Total: 23.01 kcal Atomic # 6 Polarization: -16.98 SS G_CDS: 6.06 Total: -10.92 kcal Atomic # 7 Polarization: -121.90 SS G_CDS: -5.64 Total: -127.54 kcal Atomic # 8 Polarization: -65.35 SS G_CDS: -4.63 Total: -69.98 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.09 kcal Atomic # 16 Polarization: 48.46 SS G_CDS: -0.33 Total: 48.13 kcal Total: -86.12 -3.08 -89.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175645958.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.192 kcal (2) G-P(sol) polarization free energy of solvation -86.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 16.05 seconds