Wall clock time and date at job start Wed Apr 1 2020 05:21:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.46264 * 2 1 4 4 C 1.52997 * 109.47369 * 239.99600 * 2 1 3 5 5 C 1.52996 * 109.47131 * 174.99555 * 4 2 1 6 6 C 1.52997 * 109.47131 * 179.97438 * 5 4 2 7 7 C 1.53006 * 109.47127 * 180.02562 * 6 5 4 8 8 N 1.46496 * 109.46995 * 180.02562 * 7 6 5 9 9 C 1.36937 * 119.99946 * 180.02562 * 8 7 6 10 10 H 1.08005 * 120.00046 * 0.02562 * 9 8 7 11 11 C 1.38814 * 120.00249 * 179.97438 * 9 8 7 12 12 N 1.31618 * 119.99665 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 120.00093 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47326 * 359.97438 * 13 11 9 15 15 H 1.48493 * 109.47536 * 120.00263 * 13 11 9 16 16 H 1.48509 * 109.47141 * 240.00319 * 13 11 9 17 17 N 1.46500 * 109.47080 * 119.99415 * 2 1 3 18 18 C 1.34780 * 120.00186 * 275.00452 * 17 2 1 19 19 O 1.21276 * 119.99814 * 359.97438 * 18 17 2 20 20 C 1.50698 * 120.00018 * 180.02562 * 18 17 2 21 21 H 1.08996 * 111.02449 * 29.29347 * 20 18 17 22 22 C 1.55601 * 111.16432 * 153.60598 * 20 18 17 23 23 C 1.54067 * 104.29371 * 155.78467 * 22 20 18 24 24 N 1.47058 * 110.10742 * 314.79229 * 23 22 20 25 25 C 1.46501 * 126.30488 * 209.05003 * 24 23 22 26 26 S 1.67101 * 107.40101 * 29.07557 * 24 23 22 27 27 O 1.42104 * 105.12405 * 241.03233 * 26 24 23 28 28 O 1.42097 * 105.17643 * 111.34103 * 26 24 23 29 29 H 1.09006 * 109.46747 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.47406 * 299.99961 * 1 2 3 31 31 H 1.08998 * 109.47238 * 60.00962 * 1 2 3 32 32 H 1.09001 * 109.46832 * 54.99880 * 4 2 1 33 33 H 1.08992 * 109.47303 * 295.00176 * 4 2 1 34 34 H 1.09001 * 109.46993 * 59.99869 * 5 4 2 35 35 H 1.09004 * 109.47298 * 300.00283 * 5 4 2 36 36 H 1.09001 * 109.46832 * 60.00325 * 6 5 4 37 37 H 1.08993 * 109.47194 * 299.99846 * 6 5 4 38 38 H 1.09001 * 109.46801 * 300.00272 * 7 6 5 39 39 H 1.09001 * 109.46998 * 59.99868 * 7 6 5 40 40 H 0.96998 * 120.00192 * 359.97438 * 8 7 6 41 41 H 0.97001 * 119.99952 * 180.02562 * 12 11 9 42 42 H 0.96999 * 119.99791 * 95.00061 * 17 2 1 43 43 H 1.09001 * 110.46808 * 274.48122 * 22 20 18 44 44 H 1.08993 * 110.47504 * 36.95064 * 22 20 18 45 45 H 1.09001 * 109.35681 * 74.97606 * 23 22 20 46 46 H 1.09002 * 109.35641 * 194.61395 * 23 22 20 47 47 H 1.08999 * 109.47069 * 359.97361 * 25 24 23 48 48 H 1.08995 * 109.47554 * 119.97712 * 25 24 23 49 49 H 1.09006 * 109.47403 * 239.97848 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 3.5649 -0.6132 -1.3136 6 6 4.0750 -1.3351 -2.5624 7 6 5.5999 -1.2275 -2.6265 8 7 6.0882 -1.9182 -3.8226 9 6 7.4304 -1.9554 -4.0917 10 1 8.1290 -1.4759 -3.4220 11 6 7.8932 -2.6103 -5.2248 12 7 7.0420 -3.1951 -6.0407 13 14 9.7241 -2.6616 -5.5915 14 1 10.4626 -1.9341 -4.5281 15 1 10.1810 -4.0738 -5.6346 16 1 9.9844 -2.0168 -6.9038 17 7 2.0183 -0.6905 1.1962 18 6 2.1470 -0.0181 2.3572 19 8 1.8589 1.1588 2.4115 20 6 2.6499 -0.7282 3.5876 21 1 3.3210 -1.5447 3.3210 22 6 3.3359 0.2655 4.5689 23 6 3.2209 -0.4181 5.9448 24 7 1.8621 -0.9478 6.1341 25 6 1.1662 -1.1140 7.4125 26 16 1.2581 -1.3260 4.6226 27 8 0.1096 -0.5040 4.4660 28 8 1.1721 -2.7442 4.6006 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 1.6054 -0.2618 -2.1369 33 1 1.7517 -1.7715 -1.2055 34 1 3.9995 -1.0726 -0.4258 35 1 3.8532 0.4371 -1.3573 36 1 3.6403 -0.8760 -3.4504 37 1 3.7868 -2.3853 -2.5182 38 1 5.8885 -0.1774 -2.6705 39 1 6.0342 -1.6868 -1.7385 40 1 5.4610 -2.3498 -4.4235 41 1 7.3654 -3.6530 -6.8323 42 1 2.2490 -1.6316 1.1527 43 1 4.3827 0.4058 4.2994 44 1 2.8125 1.2216 4.5712 45 1 3.9389 -1.2361 6.0029 46 1 3.4379 0.3080 6.7282 47 1 1.8134 -0.7819 8.2243 48 1 0.2530 -0.5189 7.4092 49 1 0.9145 -2.1649 7.5553 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001175645961.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:24 Heat of formation + Delta-G solvation = -99.760688 kcal Electronic energy + Delta-G solvation = -28671.987815 eV Core-core repulsion = 24568.425944 eV Total energy + Delta-G solvation = -4103.561871 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.83 seconds Orbital eigenvalues (eV) -40.44533 -37.89252 -37.55704 -37.00020 -36.41502 -35.33572 -33.75142 -33.27868 -31.65911 -30.35401 -28.28047 -27.48288 -26.06262 -24.31298 -23.24813 -22.18972 -21.30098 -20.93015 -20.70275 -19.51635 -18.23791 -17.80613 -17.28737 -17.02214 -16.64452 -15.97123 -15.66252 -15.21091 -14.93975 -14.91469 -14.75085 -14.45913 -14.05016 -13.81955 -13.71058 -13.57812 -13.44721 -13.17813 -12.99295 -12.97160 -12.60066 -12.56797 -12.47198 -12.36816 -12.02643 -11.81025 -11.70648 -11.53117 -11.33916 -11.14758 -11.03261 -10.84244 -10.75180 -10.45283 -10.39010 -10.31953 -9.98855 -9.69900 -9.59199 -9.44623 -8.87720 -6.91712 -5.76817 -3.05311 -0.51615 1.88962 2.13497 2.51992 3.01809 3.24645 3.42615 3.47927 3.50448 3.77357 3.83335 4.16741 4.31574 4.44888 4.54774 4.59057 4.63601 4.82371 4.91851 4.96987 5.02023 5.08379 5.21415 5.23013 5.29625 5.33779 5.36704 5.41719 5.52424 5.56470 5.64662 5.73249 5.83595 5.93428 5.93666 6.06763 6.09560 6.26441 6.27750 6.35877 6.43047 6.86824 6.90819 6.99391 7.68073 7.69853 8.42531 9.53298 10.12499 10.46922 11.46308 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016260 B = 0.001909 C = 0.001795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.636756 B =14666.615277 C =15594.649355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.140 3.860 3 H 0.094 0.906 4 C -0.129 4.129 5 C -0.115 4.115 6 C -0.126 4.126 7 C 0.153 3.847 8 N -0.735 5.735 9 C -0.239 4.239 10 H 0.070 0.930 11 C -0.017 4.017 12 N -0.934 5.934 13 Si 0.908 3.092 14 H -0.281 1.281 15 H -0.291 1.291 16 H -0.291 1.291 17 N -0.717 5.717 18 C 0.540 3.460 19 O -0.509 6.509 20 C -0.602 4.602 21 H 0.168 0.832 22 C -0.109 4.109 23 C 0.079 3.921 24 N -0.997 5.997 25 C 0.122 3.878 26 S 2.590 3.410 27 O -0.934 6.934 28 O -0.943 6.943 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.071 0.929 34 H 0.060 0.940 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.016 0.984 39 H 0.015 0.985 40 H 0.383 0.617 41 H 0.254 0.746 42 H 0.404 0.596 43 H 0.117 0.883 44 H 0.110 0.890 45 H 0.079 0.921 46 H 0.098 0.902 47 H 0.082 0.918 48 H 0.063 0.937 49 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.900 5.924 27.750 31.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.036 3.964 3 H 0.112 0.888 4 C -0.167 4.167 5 C -0.153 4.153 6 C -0.164 4.164 7 C 0.025 3.975 8 N -0.379 5.379 9 C -0.370 4.370 10 H 0.088 0.912 11 C -0.212 4.212 12 N -0.583 5.583 13 Si 0.739 3.261 14 H -0.206 1.206 15 H -0.219 1.219 16 H -0.219 1.219 17 N -0.370 5.370 18 C 0.322 3.678 19 O -0.383 6.383 20 C -0.712 4.712 21 H 0.186 0.814 22 C -0.149 4.149 23 C -0.047 4.047 24 N -0.840 5.840 25 C -0.022 4.022 26 S 2.682 3.318 27 O -0.923 6.923 28 O -0.933 6.933 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.102 0.898 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.034 0.966 39 H 0.033 0.967 40 H 0.217 0.783 41 H 0.064 0.936 42 H 0.239 0.761 43 H 0.136 0.864 44 H 0.129 0.871 45 H 0.097 0.903 46 H 0.117 0.883 47 H 0.101 0.899 48 H 0.081 0.919 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -14.865 6.372 27.660 32.041 hybrid contribution 1.783 -0.522 -0.550 1.937 sum -13.082 5.850 27.111 30.665 Atomic orbital electron populations 1.22243 0.94933 1.02549 1.03077 1.21188 0.94107 0.97846 0.83256 0.88804 1.21970 0.96946 1.01141 0.96595 1.21536 0.93885 1.01176 0.98718 1.21732 0.97272 1.00321 0.97088 1.20645 0.90980 0.95313 0.90562 1.42396 1.05356 1.64957 1.25199 1.19294 0.83907 1.28350 1.05431 0.91187 1.24762 0.97771 1.00981 0.97725 1.69673 1.32685 1.40793 1.15136 0.86102 0.85029 0.77218 0.77765 1.20579 1.21853 1.21854 1.46150 1.66881 1.14387 1.09549 1.18885 0.78491 0.87185 0.83275 1.90752 1.48689 1.14845 1.84033 1.31005 1.21431 1.11353 1.07456 0.81402 1.22700 1.04823 0.98218 0.89113 1.22159 0.84295 0.99960 0.98239 1.57099 1.24525 1.80853 1.21565 1.21314 0.96610 1.01502 0.82799 1.06164 0.75045 0.75021 0.75597 1.93650 1.44749 1.69305 1.84628 1.93643 1.85308 1.29017 1.85291 0.92215 0.91789 0.91020 0.89807 0.91080 0.92169 0.91884 0.91970 0.92059 0.96596 0.96681 0.78331 0.93573 0.76114 0.86419 0.87124 0.90280 0.88329 0.89928 0.91856 0.91929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.55 9.48 37.16 0.35 -1.20 16 2 C 0.14 1.32 2.57 -67.93 -0.17 1.15 16 3 H 0.09 1.01 7.58 -51.93 -0.39 0.61 16 4 C -0.13 -1.20 4.75 -26.73 -0.13 -1.32 16 5 C -0.12 -1.34 5.10 -26.73 -0.14 -1.47 16 6 C -0.13 -1.94 5.33 -26.73 -0.14 -2.09 16 7 C 0.15 3.08 6.26 -4.04 -0.03 3.05 16 8 N -0.74 -19.02 5.60 -59.91 -0.34 -19.35 16 9 C -0.24 -6.81 9.99 -15.06 -0.15 -6.96 16 10 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 11 C -0.02 -0.49 5.50 -17.43 -0.10 -0.58 16 12 N -0.93 -28.56 13.06 55.49 0.72 -27.84 16 13 Si 0.91 22.57 29.55 -169.99 -5.02 17.55 16 14 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 15 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 16 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 17 N -0.72 -6.39 4.53 -53.81 -0.24 -6.63 16 18 C 0.54 5.49 6.78 -10.98 -0.07 5.41 16 19 O -0.51 -6.82 15.56 5.56 0.09 -6.73 16 20 C -0.60 -4.21 3.71 -26.50 -0.10 -4.31 16 21 H 0.17 0.64 8.14 -51.93 -0.42 0.22 16 22 C -0.11 -0.57 6.14 -24.79 -0.15 -0.72 16 23 C 0.08 0.32 6.81 -3.18 -0.02 0.30 16 24 N -1.00 -6.73 3.72 -120.71 -0.45 -7.18 16 25 C 0.12 0.61 11.40 59.85 0.68 1.29 16 26 S 2.59 24.28 5.84 -107.50 -0.63 23.65 16 27 O -0.93 -12.16 17.75 -57.41 -1.02 -13.18 16 28 O -0.94 -11.08 18.14 -57.41 -1.04 -12.12 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.66 7.75 -51.93 -0.40 0.26 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 38 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.38 10.36 7.67 -40.82 -0.31 10.04 16 41 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 42 H 0.40 2.67 8.60 -40.82 -0.35 2.32 16 43 H 0.12 0.39 8.14 -51.93 -0.42 -0.04 16 44 H 0.11 0.74 7.27 -51.93 -0.38 0.36 16 45 H 0.08 0.20 8.14 -51.93 -0.42 -0.23 16 46 H 0.10 0.22 8.14 -51.93 -0.42 -0.20 16 47 H 0.08 0.20 8.11 -51.93 -0.42 -0.22 16 48 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 49 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 LS Contribution 412.30 15.07 6.21 6.21 Total: -1.00 -38.90 412.30 -10.45 -49.35 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -8.57 Total: 3.72 kcal Atomic # 6 Polarization: -7.28 SS G_CDS: -0.16 Total: -7.44 kcal Atomic # 7 Polarization: -60.71 SS G_CDS: -0.30 Total: -61.01 kcal Atomic # 8 Polarization: -30.06 SS G_CDS: -1.97 Total: -32.03 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.55 kcal Atomic # 16 Polarization: 24.28 SS G_CDS: -0.63 Total: 23.65 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -38.90 -10.45 -49.35 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175645961.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.409 kcal (2) G-P(sol) polarization free energy of solvation -38.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.83 seconds