Wall clock time and date at job start Wed Apr 1 2020 05:21:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.46264 * 2 1 4 4 C 1.52997 * 109.47369 * 239.99600 * 2 1 3 5 5 C 1.52996 * 109.47131 * 174.99555 * 4 2 1 6 6 C 1.52997 * 109.47131 * 179.97438 * 5 4 2 7 7 C 1.53006 * 109.47127 * 180.02562 * 6 5 4 8 8 N 1.46496 * 109.46995 * 180.02562 * 7 6 5 9 9 C 1.36937 * 119.99946 * 180.02562 * 8 7 6 10 10 H 1.08005 * 120.00046 * 0.02562 * 9 8 7 11 11 C 1.38814 * 120.00249 * 179.97438 * 9 8 7 12 12 N 1.31618 * 119.99665 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 120.00093 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47326 * 359.97438 * 13 11 9 15 15 H 1.48493 * 109.47536 * 120.00263 * 13 11 9 16 16 H 1.48509 * 109.47141 * 240.00319 * 13 11 9 17 17 N 1.46500 * 109.47080 * 119.99415 * 2 1 3 18 18 C 1.34780 * 120.00186 * 275.00452 * 17 2 1 19 19 O 1.21276 * 119.99814 * 359.97438 * 18 17 2 20 20 C 1.50698 * 120.00018 * 180.02562 * 18 17 2 21 21 H 1.08996 * 111.02449 * 29.29347 * 20 18 17 22 22 C 1.55601 * 111.16432 * 153.60598 * 20 18 17 23 23 C 1.54067 * 104.29371 * 155.78467 * 22 20 18 24 24 N 1.47058 * 110.10742 * 314.79229 * 23 22 20 25 25 C 1.46501 * 126.30488 * 209.05003 * 24 23 22 26 26 S 1.67101 * 107.40101 * 29.07557 * 24 23 22 27 27 O 1.42104 * 105.12405 * 241.03233 * 26 24 23 28 28 O 1.42097 * 105.17643 * 111.34103 * 26 24 23 29 29 H 1.09006 * 109.46747 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.47406 * 299.99961 * 1 2 3 31 31 H 1.08998 * 109.47238 * 60.00962 * 1 2 3 32 32 H 1.09001 * 109.46832 * 54.99880 * 4 2 1 33 33 H 1.08992 * 109.47303 * 295.00176 * 4 2 1 34 34 H 1.09001 * 109.46993 * 59.99869 * 5 4 2 35 35 H 1.09004 * 109.47298 * 300.00283 * 5 4 2 36 36 H 1.09001 * 109.46832 * 60.00325 * 6 5 4 37 37 H 1.08993 * 109.47194 * 299.99846 * 6 5 4 38 38 H 1.09001 * 109.46801 * 300.00272 * 7 6 5 39 39 H 1.09001 * 109.46998 * 59.99868 * 7 6 5 40 40 H 0.96998 * 120.00192 * 359.97438 * 8 7 6 41 41 H 0.97001 * 119.99952 * 180.02562 * 12 11 9 42 42 H 0.96999 * 119.99791 * 95.00061 * 17 2 1 43 43 H 1.09001 * 110.46808 * 274.48122 * 22 20 18 44 44 H 1.08993 * 110.47504 * 36.95064 * 22 20 18 45 45 H 1.09001 * 109.35681 * 74.97606 * 23 22 20 46 46 H 1.09002 * 109.35641 * 194.61395 * 23 22 20 47 47 H 1.08999 * 109.47069 * 359.97361 * 25 24 23 48 48 H 1.08995 * 109.47554 * 119.97712 * 25 24 23 49 49 H 1.09006 * 109.47403 * 239.97848 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 3.5649 -0.6132 -1.3136 6 6 4.0750 -1.3351 -2.5624 7 6 5.5999 -1.2275 -2.6265 8 7 6.0882 -1.9182 -3.8226 9 6 7.4304 -1.9554 -4.0917 10 1 8.1290 -1.4759 -3.4220 11 6 7.8932 -2.6103 -5.2248 12 7 7.0420 -3.1951 -6.0407 13 14 9.7241 -2.6616 -5.5915 14 1 10.4626 -1.9341 -4.5281 15 1 10.1810 -4.0738 -5.6346 16 1 9.9844 -2.0168 -6.9038 17 7 2.0183 -0.6905 1.1962 18 6 2.1470 -0.0181 2.3572 19 8 1.8589 1.1588 2.4115 20 6 2.6499 -0.7282 3.5876 21 1 3.3210 -1.5447 3.3210 22 6 3.3359 0.2655 4.5689 23 6 3.2209 -0.4181 5.9448 24 7 1.8621 -0.9478 6.1341 25 6 1.1662 -1.1140 7.4125 26 16 1.2581 -1.3260 4.6226 27 8 0.1096 -0.5040 4.4660 28 8 1.1721 -2.7442 4.6006 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 1.6054 -0.2618 -2.1369 33 1 1.7517 -1.7715 -1.2055 34 1 3.9995 -1.0726 -0.4258 35 1 3.8532 0.4371 -1.3573 36 1 3.6403 -0.8760 -3.4504 37 1 3.7868 -2.3853 -2.5182 38 1 5.8885 -0.1774 -2.6705 39 1 6.0342 -1.6868 -1.7385 40 1 5.4610 -2.3498 -4.4235 41 1 7.3654 -3.6530 -6.8323 42 1 2.2490 -1.6316 1.1527 43 1 4.3827 0.4058 4.2994 44 1 2.8125 1.2216 4.5712 45 1 3.9389 -1.2361 6.0029 46 1 3.4379 0.3080 6.7282 47 1 1.8134 -0.7819 8.2243 48 1 0.2530 -0.5189 7.4092 49 1 0.9145 -2.1649 7.5553 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001175645961.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:18 Heat of formation + Delta-G solvation = -130.540203 kcal Electronic energy + Delta-G solvation = -28673.322515 eV Core-core repulsion = 24568.425944 eV Total energy + Delta-G solvation = -4104.896571 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 5.06 seconds Orbital eigenvalues (eV) -41.22606 -38.52082 -38.31683 -37.86799 -37.21026 -36.85857 -34.84568 -34.24375 -32.97208 -31.71741 -28.87249 -28.74737 -26.53528 -25.93644 -24.09316 -23.34358 -22.16357 -21.98056 -21.70530 -20.20751 -19.12967 -18.90837 -18.42283 -17.92420 -17.40904 -16.72362 -16.66172 -16.27315 -16.24276 -15.67118 -15.53902 -15.42878 -15.26629 -15.09608 -14.69037 -14.35738 -14.22282 -14.17016 -14.06614 -13.87725 -13.43396 -13.30944 -13.29092 -13.09138 -12.91378 -12.90434 -12.86524 -12.48278 -12.44560 -12.30959 -12.24739 -12.10991 -11.89507 -11.83287 -11.75070 -11.49300 -11.41726 -11.16571 -10.94767 -10.26144 -10.03666 -9.01280 -7.96803 -5.25950 -1.19684 1.31544 1.38455 1.46848 1.47957 1.58156 1.82950 2.36009 2.55183 2.78004 3.13716 3.36811 3.38068 3.52826 3.63480 3.88202 3.99323 4.04932 4.10764 4.14743 4.27378 4.32955 4.38649 4.58958 4.62720 4.63588 4.71015 4.73423 4.79055 4.86239 4.90422 4.91094 4.95237 4.96874 5.01509 5.01924 5.08531 5.25388 5.29509 5.37913 5.46359 5.51916 5.53979 5.54814 6.26339 6.28494 6.95732 7.31872 8.09170 8.31768 9.27044 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016260 B = 0.001909 C = 0.001795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.636756 B =14666.615277 C =15594.649355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.142 3.858 3 H 0.080 0.920 4 C -0.119 4.119 5 C -0.106 4.106 6 C -0.114 4.114 7 C 0.148 3.852 8 N -0.750 5.750 9 C -0.247 4.247 10 H 0.075 0.925 11 C -0.079 4.079 12 N -0.970 5.970 13 Si 0.976 3.024 14 H -0.266 1.266 15 H -0.291 1.291 16 H -0.293 1.293 17 N -0.712 5.712 18 C 0.532 3.468 19 O -0.547 6.547 20 C -0.585 4.585 21 H 0.206 0.794 22 C -0.109 4.109 23 C 0.075 3.925 24 N -0.997 5.997 25 C 0.110 3.890 26 S 2.583 3.417 27 O -0.985 6.985 28 O -0.976 6.976 29 H 0.069 0.931 30 H 0.041 0.959 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.070 0.930 35 H 0.059 0.941 36 H 0.056 0.944 37 H 0.062 0.938 38 H 0.014 0.986 39 H 0.020 0.980 40 H 0.374 0.626 41 H 0.252 0.748 42 H 0.416 0.584 43 H 0.145 0.855 44 H 0.092 0.908 45 H 0.105 0.895 46 H 0.122 0.878 47 H 0.114 0.886 48 H 0.056 0.944 49 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.269 5.855 29.153 32.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.038 3.962 3 H 0.098 0.902 4 C -0.157 4.157 5 C -0.144 4.144 6 C -0.152 4.152 7 C 0.022 3.978 8 N -0.393 5.393 9 C -0.379 4.379 10 H 0.093 0.907 11 C -0.271 4.271 12 N -0.621 5.621 13 Si 0.805 3.195 14 H -0.190 1.190 15 H -0.218 1.218 16 H -0.220 1.220 17 N -0.366 5.366 18 C 0.315 3.685 19 O -0.424 6.424 20 C -0.698 4.698 21 H 0.223 0.777 22 C -0.148 4.148 23 C -0.049 4.049 24 N -0.842 5.842 25 C -0.033 4.033 26 S 2.679 3.321 27 O -0.974 6.974 28 O -0.965 6.965 29 H 0.088 0.912 30 H 0.060 0.940 31 H 0.102 0.898 32 H 0.108 0.892 33 H 0.103 0.897 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.080 0.920 38 H 0.032 0.968 39 H 0.038 0.962 40 H 0.205 0.795 41 H 0.061 0.939 42 H 0.254 0.746 43 H 0.163 0.837 44 H 0.110 0.890 45 H 0.123 0.877 46 H 0.140 0.860 47 H 0.132 0.868 48 H 0.074 0.926 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -13.260 6.289 29.116 32.605 hybrid contribution 1.282 -0.441 -0.941 1.650 sum -11.978 5.848 28.175 31.169 Atomic orbital electron populations 1.22222 0.94697 1.03046 1.02636 1.21103 0.94256 0.97307 0.83553 0.90167 1.21873 0.95105 1.02028 0.96651 1.21444 0.95429 1.00449 0.97075 1.21609 0.93836 1.00928 0.98801 1.20868 0.94160 0.94319 0.88482 1.42656 1.04534 1.65374 1.26706 1.19702 0.85336 1.27548 1.05346 0.90709 1.25630 1.02293 1.01300 0.97892 1.69825 1.34636 1.41999 1.15620 0.85034 0.79837 0.77063 0.77585 1.18987 1.21823 1.21991 1.46174 1.66184 1.14994 1.09210 1.19358 0.77938 0.86943 0.84213 1.90736 1.50273 1.16659 1.84756 1.30930 1.20438 1.12626 1.05763 0.77727 1.22840 1.05814 0.96931 0.89249 1.22430 0.83064 1.01374 0.98062 1.57005 1.25648 1.80837 1.20729 1.21552 0.97201 1.01682 0.82893 1.06001 0.75280 0.74151 0.76641 1.93590 1.48176 1.69948 1.85664 1.93600 1.86138 1.30670 1.86069 0.91238 0.93968 0.89754 0.89193 0.89739 0.91124 0.92209 0.92512 0.91954 0.96809 0.96188 0.79471 0.93945 0.74641 0.83711 0.88990 0.87730 0.85956 0.86786 0.92551 0.91899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 105. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.96 9.48 71.98 0.68 -2.28 16 2 C 0.14 2.52 2.57 44.99 0.12 2.64 16 3 H 0.08 1.68 7.58 -2.39 -0.02 1.67 16 4 C -0.12 -1.96 4.75 30.59 0.15 -1.81 16 5 C -0.11 -2.24 5.10 30.59 0.16 -2.08 16 6 C -0.11 -3.34 5.33 30.60 0.16 -3.18 16 7 C 0.15 5.81 6.26 86.38 0.54 6.35 16 8 N -0.75 -38.64 5.60 -343.44 -1.92 -40.57 16 9 C -0.25 -14.01 9.99 84.03 0.84 -13.17 16 10 H 0.07 4.06 7.83 -2.91 -0.02 4.04 16 11 C -0.08 -4.58 5.50 84.86 0.47 -4.12 16 12 N -0.97 -59.72 13.06 21.65 0.28 -59.44 16 13 Si 0.98 46.15 29.55 68.60 2.03 48.18 16 14 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 15 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 16 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 17 N -0.71 -11.73 4.53 -442.53 -2.00 -13.74 16 18 C 0.53 10.41 6.78 87.66 0.59 11.00 16 19 O -0.55 -14.83 15.56 -3.02 -0.05 -14.88 16 20 C -0.58 -7.16 3.71 30.74 0.11 -7.05 16 21 H 0.21 0.87 8.14 -2.39 -0.02 0.85 16 22 C -0.11 -0.88 6.14 31.85 0.20 -0.68 16 23 C 0.08 0.38 6.81 86.63 0.59 0.97 16 24 N -1.00 -12.12 3.72 -535.82 -1.99 -14.11 16 25 C 0.11 0.98 11.40 127.77 1.46 2.44 16 26 S 2.58 48.06 5.84 -56.49 -0.33 47.73 16 27 O -0.98 -27.05 17.75 -127.77 -2.27 -29.32 16 28 O -0.98 -22.88 18.14 -127.77 -2.32 -25.19 16 29 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 30 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.07 1.36 7.75 -2.39 -0.02 1.34 16 35 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 36 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 39 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.37 20.34 7.67 -92.71 -0.71 19.63 16 41 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 42 H 0.42 4.61 8.60 -92.71 -0.80 3.81 16 43 H 0.14 0.42 8.14 -2.39 -0.02 0.40 16 44 H 0.09 1.15 7.27 -2.39 -0.02 1.13 16 45 H 0.10 0.08 8.14 -2.39 -0.02 0.06 16 46 H 0.12 0.11 8.14 -2.39 -0.02 0.09 16 47 H 0.11 0.27 8.11 -2.39 -0.02 0.25 16 48 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 49 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 Total: -1.00 -85.91 412.30 -3.08 -88.99 By element: Atomic # 1 Polarization: 23.87 SS G_CDS: -0.57 Total: 23.30 kcal Atomic # 6 Polarization: -17.02 SS G_CDS: 6.06 Total: -10.96 kcal Atomic # 7 Polarization: -122.21 SS G_CDS: -5.64 Total: -127.85 kcal Atomic # 8 Polarization: -64.75 SS G_CDS: -4.63 Total: -69.39 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.18 kcal Atomic # 16 Polarization: 48.06 SS G_CDS: -0.33 Total: 47.73 kcal Total: -85.91 -3.08 -88.99 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175645961.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.552 kcal (2) G-P(sol) polarization free energy of solvation -85.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.06 seconds