Wall clock time and date at job start Wed Apr 1 2020 05:11:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 110.30583 * 2 1 4 4 C 1.54386 * 110.34101 * 237.81658 * 2 1 3 5 5 N 1.48141 * 104.61709 * 217.26584 * 4 2 1 6 6 C 1.34780 * 127.83716 * 219.59181 * 5 4 2 7 7 O 1.21285 * 119.99939 * 180.02562 * 6 5 4 8 8 C 1.50706 * 119.99882 * 0.02562 * 6 5 4 9 9 C 1.53002 * 109.47044 * 180.02562 * 8 6 5 10 10 C 1.52999 * 109.47213 * 180.02562 * 9 8 6 11 11 S 1.81395 * 109.46986 * 180.02562 * 10 9 8 12 12 N 1.65599 * 104.44748 * 180.02562 * 11 10 9 13 13 O 1.42105 * 110.54530 * 291.62628 * 11 10 9 14 14 O 1.42101 * 110.54333 * 68.37799 * 11 10 9 15 15 C 1.48146 * 104.32729 * 39.84801 * 5 4 2 16 16 C 1.54281 * 110.33669 * 122.28310 * 2 1 3 17 17 C 1.52993 * 110.34902 * 359.97438 * 16 2 1 18 18 C 1.52998 * 110.34243 * 237.73544 * 16 2 1 19 19 N 1.46506 * 109.47591 * 180.02562 * 18 16 2 20 20 C 1.36937 * 120.00265 * 180.02562 * 19 18 16 21 21 H 1.08001 * 119.99750 * 359.97438 * 20 19 18 22 22 C 1.38805 * 119.99953 * 180.02562 * 20 19 18 23 23 N 1.31620 * 120.00134 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00125 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.46953 * 60.00431 * 24 22 20 26 26 H 1.48498 * 109.47337 * 179.97438 * 24 22 20 27 27 H 1.48492 * 109.47322 * 300.00144 * 24 22 20 28 28 H 1.08995 * 109.47423 * 180.72791 * 1 2 3 29 29 H 1.09001 * 109.46877 * 300.72888 * 1 2 3 30 30 H 1.09006 * 109.46759 * 60.72336 * 1 2 3 31 31 H 1.09002 * 110.40568 * 98.48211 * 4 2 1 32 32 H 1.09003 * 110.51068 * 336.10598 * 4 2 1 33 33 H 1.09003 * 109.46554 * 60.00523 * 8 6 5 34 34 H 1.08995 * 109.47565 * 300.00588 * 8 6 5 35 35 H 1.09004 * 109.46811 * 60.00336 * 9 8 6 36 36 H 1.09005 * 109.47229 * 300.00471 * 9 8 6 37 37 H 1.09003 * 109.46593 * 60.00151 * 10 9 8 38 38 H 1.08994 * 109.46870 * 300.00519 * 10 9 8 39 39 H 0.97004 * 120.00159 * 270.00112 * 12 11 10 40 40 H 0.97005 * 120.00098 * 90.00362 * 12 11 10 41 41 H 1.09001 * 110.40585 * 78.93328 * 15 5 4 42 42 H 1.08997 * 110.40620 * 201.37218 * 15 5 4 43 43 H 1.09001 * 109.47261 * 60.00084 * 17 16 2 44 44 H 1.09005 * 109.47556 * 179.97438 * 17 16 2 45 45 H 1.08998 * 109.47271 * 300.00117 * 17 16 2 46 46 H 1.08996 * 109.47975 * 300.00963 * 18 16 2 47 47 H 1.09006 * 109.46806 * 60.00515 * 18 16 2 48 48 H 0.96999 * 119.99358 * 0.02562 * 19 18 16 49 49 H 0.96999 * 120.00102 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9083 1.0222 0.0000 4 6 2.0667 -0.7710 -1.2252 5 7 3.2663 -1.4811 -0.7239 6 6 4.4424 -1.6653 -1.3559 7 8 5.3365 -2.2746 -0.8079 8 6 4.6464 -1.1140 -2.7437 9 6 6.0560 -1.4602 -3.2278 10 6 6.2634 -0.9001 -4.6363 11 16 7.9342 -1.3112 -5.2105 12 7 8.0234 -0.6530 -6.7275 13 8 8.9086 -0.5977 -4.4616 14 8 8.0569 -2.7102 -5.4272 15 6 2.8779 -1.9484 0.6272 16 6 2.0662 -0.7727 1.2230 17 6 0.9061 -1.3048 2.0666 18 6 2.9692 0.1287 2.0675 19 7 3.4677 -0.6232 3.2219 20 6 4.2998 -0.0182 4.1256 21 1 4.5890 1.0131 3.9871 22 6 4.7725 -0.7307 5.2190 23 7 4.4205 -1.9877 5.3875 24 14 5.9083 0.0943 6.4514 25 1 5.2184 1.2624 7.0555 26 1 6.2679 -0.8738 7.5185 27 1 7.1410 0.5504 5.7603 28 1 -0.3634 -1.0275 0.0131 29 1 -0.3633 0.5251 0.8834 30 1 -0.3633 0.5026 -0.8965 31 1 2.3401 -0.0777 -2.0206 32 1 1.3243 -1.4846 -1.5826 33 1 4.5237 -0.0311 -2.7260 34 1 3.9125 -1.5519 -3.4201 35 1 6.1783 -2.5433 -3.2454 36 1 6.7902 -1.0226 -2.5513 37 1 6.1412 0.1829 -4.6182 38 1 5.5292 -1.3373 -5.3129 39 1 7.7603 -1.1774 -7.5000 40 1 8.3388 0.2569 -6.8436 41 1 2.2593 -2.8431 0.5566 42 1 3.7640 -2.1445 1.2309 43 1 0.2952 -1.9755 1.4623 44 1 1.3005 -1.8480 2.9254 45 1 0.2960 -0.4706 2.4127 46 1 3.8111 0.4676 1.4641 47 1 2.3998 0.9913 2.4137 48 1 3.2082 -1.5495 3.3460 49 1 4.7511 -2.4858 6.1514 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001182421095.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:51 Heat of formation + Delta-G solvation = -104.069545 kcal Electronic energy + Delta-G solvation = -29216.133925 eV Core-core repulsion = 25112.385208 eV Total energy + Delta-G solvation = -4103.748717 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.29771 -38.42912 -37.39888 -36.27274 -34.88883 -34.74500 -33.61814 -33.25252 -31.52433 -29.74505 -28.98552 -26.83400 -25.63994 -25.52790 -23.36884 -22.47792 -21.11365 -19.78182 -19.26297 -18.35448 -17.90563 -17.71006 -17.44884 -16.81184 -16.41524 -16.31888 -15.62527 -15.31610 -14.96346 -14.79736 -14.39584 -13.98653 -13.80590 -13.58168 -13.14249 -13.03960 -12.91159 -12.72001 -12.56463 -12.50175 -12.40105 -12.32430 -12.26764 -11.94726 -11.83217 -11.54314 -11.43325 -11.34372 -11.27197 -11.18966 -10.95234 -10.77245 -10.64877 -10.46496 -10.30597 -10.19029 -9.89124 -9.68219 -9.55122 -8.81967 -8.55855 -6.86225 -5.70797 -2.98951 -0.09419 2.52950 2.74224 3.01545 3.48955 3.51970 3.53488 3.54383 3.79381 4.09999 4.40087 4.52243 4.57640 4.60282 4.67435 4.80639 4.93186 4.98477 5.12811 5.20990 5.30937 5.36900 5.40019 5.48686 5.50960 5.57275 5.60195 5.66624 5.72667 5.78029 5.84966 5.96276 6.01044 6.12715 6.18784 6.23029 6.33699 6.43675 6.55893 6.63621 6.70826 6.81303 6.89596 7.70026 7.74699 8.28846 8.48185 9.59371 10.16303 10.50898 11.52129 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010114 B = 0.002592 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2767.893802 B =10798.675358 C =12853.589589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.099 4.099 3 H 0.081 0.919 4 C 0.105 3.895 5 N -0.621 5.621 6 C 0.527 3.473 7 O -0.531 6.531 8 C -0.126 4.126 9 C -0.101 4.101 10 C -0.631 4.631 11 S 2.620 3.380 12 N -1.251 6.251 13 O -0.953 6.953 14 O -0.956 6.956 15 C 0.112 3.888 16 C -0.075 4.075 17 C -0.134 4.134 18 C 0.169 3.831 19 N -0.729 5.729 20 C -0.239 4.239 21 H 0.068 0.932 22 C -0.013 4.013 23 N -0.933 5.933 24 Si 0.907 3.093 25 H -0.287 1.287 26 H -0.291 1.291 27 H -0.286 1.286 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.050 0.950 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.133 0.867 38 H 0.132 0.868 39 H 0.417 0.583 40 H 0.418 0.582 41 H 0.065 0.935 42 H 0.099 0.901 43 H 0.050 0.950 44 H 0.068 0.932 45 H 0.059 0.941 46 H 0.016 0.984 47 H 0.020 0.980 48 H 0.384 0.616 49 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.486 4.539 -27.638 28.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.118 4.118 3 H 0.100 0.900 4 C -0.018 4.018 5 N -0.355 5.355 6 C 0.315 3.685 7 O -0.407 6.407 8 C -0.167 4.167 9 C -0.140 4.140 10 C -0.760 4.760 11 S 2.709 3.291 12 N -0.921 5.921 13 O -0.943 6.943 14 O -0.946 6.946 15 C -0.010 4.010 16 C -0.077 4.077 17 C -0.192 4.192 18 C 0.042 3.958 19 N -0.374 5.374 20 C -0.370 4.370 21 H 0.086 0.914 22 C -0.209 4.209 23 N -0.582 5.582 24 Si 0.738 3.262 25 H -0.214 1.214 26 H -0.217 1.217 27 H -0.213 1.213 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.069 0.931 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.114 0.886 34 H 0.113 0.887 35 H 0.107 0.893 36 H 0.109 0.891 37 H 0.152 0.848 38 H 0.151 0.849 39 H 0.245 0.755 40 H 0.246 0.754 41 H 0.084 0.916 42 H 0.117 0.883 43 H 0.069 0.931 44 H 0.087 0.913 45 H 0.078 0.922 46 H 0.034 0.966 47 H 0.037 0.963 48 H 0.219 0.781 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -5.082 3.739 -26.702 27.438 hybrid contribution -0.254 0.783 0.206 0.849 sum -5.337 4.522 -26.497 27.405 Atomic orbital electron populations 1.21892 0.94185 1.02165 1.01643 1.22144 0.96028 0.99716 0.93952 0.90016 1.22493 0.87078 0.95359 0.96887 1.48951 1.12661 1.55611 1.18278 1.20171 0.80645 0.80221 0.87438 1.90783 1.40829 1.41545 1.67535 1.21557 0.98016 1.02922 0.94169 1.21084 0.98440 1.02837 0.91654 1.30725 1.25792 1.11800 1.07730 1.04704 0.76960 0.74186 0.73205 1.53513 1.84201 1.28079 1.26259 1.93645 1.55581 1.74266 1.70812 1.93631 1.86035 1.30747 1.84142 1.22633 1.00385 0.95609 0.82355 1.21775 0.95971 0.95417 0.94493 1.21869 0.96606 1.00864 0.99813 1.20634 0.93663 0.92918 0.88611 1.42378 1.57277 1.12843 1.24866 1.19137 1.20541 0.95663 1.01639 0.91439 1.24713 1.01056 0.96071 0.99021 1.69637 1.48998 1.08377 1.31164 0.86272 0.80842 0.78095 0.80999 1.21375 1.21702 1.21275 0.92060 0.91760 0.93122 0.90774 0.91087 0.88576 0.88750 0.89282 0.89099 0.84822 0.84937 0.75483 0.75412 0.91632 0.88258 0.93138 0.91261 0.92203 0.96584 0.96266 0.78101 0.93483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 7.93 37.16 0.29 -0.97 16 2 C -0.10 -1.11 3.30 -89.22 -0.29 -1.40 16 3 H 0.08 0.94 7.72 -51.93 -0.40 0.54 16 4 C 0.11 1.04 6.45 -2.41 -0.02 1.02 16 5 N -0.62 -8.78 3.31 -169.05 -0.56 -9.34 16 6 C 0.53 7.98 7.91 -10.98 -0.09 7.89 16 7 O -0.53 -10.73 16.25 5.55 0.09 -10.64 16 8 C -0.13 -1.19 4.68 -27.88 -0.13 -1.32 16 9 C -0.10 -0.99 4.51 -26.73 -0.12 -1.11 16 10 C -0.63 -3.39 6.18 37.16 0.23 -3.16 16 11 S 2.62 19.94 5.97 -107.50 -0.64 19.30 16 12 N -1.25 -4.38 9.36 60.35 0.56 -3.81 16 13 O -0.95 -11.49 18.10 -57.54 -1.04 -12.53 16 14 O -0.96 -11.10 18.10 -57.54 -1.04 -12.14 16 15 C 0.11 1.86 5.93 -2.19 -0.01 1.85 16 16 C -0.08 -1.15 0.74 -152.90 -0.11 -1.27 16 17 C -0.13 -1.96 7.11 37.15 0.26 -1.69 16 18 C 0.17 3.42 4.96 -4.04 -0.02 3.40 16 19 N -0.73 -18.56 4.80 -59.91 -0.29 -18.85 16 20 C -0.24 -6.84 9.99 -15.06 -0.15 -6.99 16 21 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 22 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 23 N -0.93 -28.79 13.06 55.49 0.72 -28.07 16 24 Si 0.91 23.15 29.55 -169.99 -5.02 18.12 16 25 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 26 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 27 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 28 H 0.06 0.53 6.61 -51.93 -0.34 0.19 16 29 H 0.06 0.61 6.98 -51.93 -0.36 0.25 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.55 7.30 -51.93 -0.38 0.17 16 32 H 0.07 0.60 7.87 -51.93 -0.41 0.19 16 33 H 0.10 0.72 7.95 -51.93 -0.41 0.31 16 34 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.09 0.95 8.10 -51.93 -0.42 0.53 16 36 H 0.09 1.04 8.10 -51.93 -0.42 0.62 16 37 H 0.13 0.42 8.14 -51.92 -0.42 -0.01 16 38 H 0.13 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.42 0.74 8.96 -34.47 -0.31 0.43 16 40 H 0.42 0.82 8.96 -34.47 -0.31 0.52 16 41 H 0.07 0.99 7.84 -51.93 -0.41 0.58 16 42 H 0.10 2.13 6.96 -51.93 -0.36 1.77 16 43 H 0.05 0.60 6.67 -51.93 -0.35 0.26 16 44 H 0.07 1.23 6.75 -51.93 -0.35 0.88 16 45 H 0.06 0.83 6.89 -51.93 -0.36 0.47 16 46 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 47 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.38 10.19 5.99 -40.82 -0.24 9.95 16 49 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 399.68 15.07 6.02 6.02 Total: -1.00 -41.04 399.68 -9.36 -50.40 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -7.92 Total: 5.74 kcal Atomic # 6 Polarization: -3.96 SS G_CDS: -0.25 Total: -4.22 kcal Atomic # 7 Polarization: -60.51 SS G_CDS: 0.44 Total: -60.07 kcal Atomic # 8 Polarization: -33.32 SS G_CDS: -1.99 Total: -35.31 kcal Atomic # 14 Polarization: 23.15 SS G_CDS: -5.02 Total: 18.12 kcal Atomic # 16 Polarization: 19.94 SS G_CDS: -0.64 Total: 19.30 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -41.04 -9.36 -50.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182421095.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.668 kcal (2) G-P(sol) polarization free energy of solvation -41.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds