Wall clock time and date at job start Wed Apr 1 2020 05:11:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 110.30583 * 2 1 4 4 C 1.54386 * 110.34101 * 237.81658 * 2 1 3 5 5 N 1.48141 * 104.61709 * 217.26584 * 4 2 1 6 6 C 1.34780 * 127.83716 * 219.59181 * 5 4 2 7 7 O 1.21285 * 119.99939 * 180.02562 * 6 5 4 8 8 C 1.50706 * 119.99882 * 0.02562 * 6 5 4 9 9 C 1.53002 * 109.47044 * 180.02562 * 8 6 5 10 10 C 1.52999 * 109.47213 * 180.02562 * 9 8 6 11 11 S 1.81395 * 109.46986 * 180.02562 * 10 9 8 12 12 N 1.65599 * 104.44748 * 180.02562 * 11 10 9 13 13 O 1.42105 * 110.54530 * 291.62628 * 11 10 9 14 14 O 1.42101 * 110.54333 * 68.37799 * 11 10 9 15 15 C 1.48146 * 104.32729 * 39.84801 * 5 4 2 16 16 C 1.54281 * 110.33669 * 122.28310 * 2 1 3 17 17 C 1.52993 * 110.34902 * 359.97438 * 16 2 1 18 18 C 1.52998 * 110.34243 * 237.73544 * 16 2 1 19 19 N 1.46506 * 109.47591 * 180.02562 * 18 16 2 20 20 C 1.36937 * 120.00265 * 180.02562 * 19 18 16 21 21 H 1.08001 * 119.99750 * 359.97438 * 20 19 18 22 22 C 1.38805 * 119.99953 * 180.02562 * 20 19 18 23 23 N 1.31620 * 120.00134 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00125 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.46953 * 60.00431 * 24 22 20 26 26 H 1.48498 * 109.47337 * 179.97438 * 24 22 20 27 27 H 1.48492 * 109.47322 * 300.00144 * 24 22 20 28 28 H 1.08995 * 109.47423 * 180.72791 * 1 2 3 29 29 H 1.09001 * 109.46877 * 300.72888 * 1 2 3 30 30 H 1.09006 * 109.46759 * 60.72336 * 1 2 3 31 31 H 1.09002 * 110.40568 * 98.48211 * 4 2 1 32 32 H 1.09003 * 110.51068 * 336.10598 * 4 2 1 33 33 H 1.09003 * 109.46554 * 60.00523 * 8 6 5 34 34 H 1.08995 * 109.47565 * 300.00588 * 8 6 5 35 35 H 1.09004 * 109.46811 * 60.00336 * 9 8 6 36 36 H 1.09005 * 109.47229 * 300.00471 * 9 8 6 37 37 H 1.09003 * 109.46593 * 60.00151 * 10 9 8 38 38 H 1.08994 * 109.46870 * 300.00519 * 10 9 8 39 39 H 0.97004 * 120.00159 * 270.00112 * 12 11 10 40 40 H 0.97005 * 120.00098 * 90.00362 * 12 11 10 41 41 H 1.09001 * 110.40585 * 78.93328 * 15 5 4 42 42 H 1.08997 * 110.40620 * 201.37218 * 15 5 4 43 43 H 1.09001 * 109.47261 * 60.00084 * 17 16 2 44 44 H 1.09005 * 109.47556 * 179.97438 * 17 16 2 45 45 H 1.08998 * 109.47271 * 300.00117 * 17 16 2 46 46 H 1.08996 * 109.47975 * 300.00963 * 18 16 2 47 47 H 1.09006 * 109.46806 * 60.00515 * 18 16 2 48 48 H 0.96999 * 119.99358 * 0.02562 * 19 18 16 49 49 H 0.96999 * 120.00102 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9083 1.0222 0.0000 4 6 2.0667 -0.7710 -1.2252 5 7 3.2663 -1.4811 -0.7239 6 6 4.4424 -1.6653 -1.3559 7 8 5.3365 -2.2746 -0.8079 8 6 4.6464 -1.1140 -2.7437 9 6 6.0560 -1.4602 -3.2278 10 6 6.2634 -0.9001 -4.6363 11 16 7.9342 -1.3112 -5.2105 12 7 8.0234 -0.6530 -6.7275 13 8 8.9086 -0.5977 -4.4616 14 8 8.0569 -2.7102 -5.4272 15 6 2.8779 -1.9484 0.6272 16 6 2.0662 -0.7727 1.2230 17 6 0.9061 -1.3048 2.0666 18 6 2.9692 0.1287 2.0675 19 7 3.4677 -0.6232 3.2219 20 6 4.2998 -0.0182 4.1256 21 1 4.5890 1.0131 3.9871 22 6 4.7725 -0.7307 5.2190 23 7 4.4205 -1.9877 5.3875 24 14 5.9083 0.0943 6.4514 25 1 5.2184 1.2624 7.0555 26 1 6.2679 -0.8738 7.5185 27 1 7.1410 0.5504 5.7603 28 1 -0.3634 -1.0275 0.0131 29 1 -0.3633 0.5251 0.8834 30 1 -0.3633 0.5026 -0.8965 31 1 2.3401 -0.0777 -2.0206 32 1 1.3243 -1.4846 -1.5826 33 1 4.5237 -0.0311 -2.7260 34 1 3.9125 -1.5519 -3.4201 35 1 6.1783 -2.5433 -3.2454 36 1 6.7902 -1.0226 -2.5513 37 1 6.1412 0.1829 -4.6182 38 1 5.5292 -1.3373 -5.3129 39 1 7.7603 -1.1774 -7.5000 40 1 8.3388 0.2569 -6.8436 41 1 2.2593 -2.8431 0.5566 42 1 3.7640 -2.1445 1.2309 43 1 0.2952 -1.9755 1.4623 44 1 1.3005 -1.8480 2.9254 45 1 0.2960 -0.4706 2.4127 46 1 3.8111 0.4676 1.4641 47 1 2.3998 0.9913 2.4137 48 1 3.2082 -1.5495 3.3460 49 1 4.7511 -2.4858 6.1514 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001182421095.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:50 Heat of formation + Delta-G solvation = -139.520156 kcal Electronic energy + Delta-G solvation = -29217.671179 eV Core-core repulsion = 25112.385208 eV Total energy + Delta-G solvation = -4105.285971 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.43083 -39.62094 -38.16184 -37.03074 -36.49409 -35.65806 -34.64513 -33.99081 -33.14721 -31.24273 -29.86755 -28.03031 -27.00479 -26.61879 -25.16180 -23.34072 -22.35008 -20.39421 -20.28318 -19.73150 -19.12461 -18.33422 -18.28640 -18.03075 -17.30401 -17.15719 -16.72126 -16.46543 -16.26770 -16.00999 -15.68118 -15.31885 -15.03136 -14.83423 -14.55247 -14.42357 -13.91563 -13.74940 -13.36480 -13.26916 -13.22541 -13.14173 -13.09544 -13.07510 -12.92334 -12.88037 -12.79766 -12.61306 -12.59792 -12.30873 -12.12911 -11.97056 -11.94495 -11.92038 -11.57793 -11.25582 -11.15552 -11.11082 -10.96944 -10.80333 -9.71076 -9.01496 -7.98221 -5.26168 -0.67626 1.41342 1.45879 1.51444 1.63362 1.94548 2.08228 2.52539 2.94519 3.25363 3.33354 3.36227 3.59103 3.62413 3.78578 3.84276 3.85199 4.08080 4.18953 4.26171 4.36234 4.37294 4.42887 4.54367 4.61998 4.67914 4.72018 4.74608 4.83394 4.88150 4.90661 4.94085 5.01800 5.06623 5.10988 5.15394 5.24317 5.30246 5.33776 5.41307 5.46621 5.48810 5.69642 6.24269 6.44907 6.63864 7.17702 7.30446 8.07766 8.30390 9.25258 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010114 B = 0.002592 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2767.893802 B =10798.675358 C =12853.589589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.092 4.092 3 H 0.082 0.918 4 C 0.105 3.895 5 N -0.622 5.622 6 C 0.510 3.490 7 O -0.602 6.602 8 C -0.113 4.113 9 C -0.115 4.115 10 C -0.604 4.604 11 S 2.627 3.373 12 N -1.232 6.232 13 O -1.007 7.007 14 O -1.004 7.004 15 C 0.112 3.888 16 C -0.069 4.069 17 C -0.127 4.127 18 C 0.169 3.831 19 N -0.740 5.740 20 C -0.247 4.247 21 H 0.070 0.930 22 C -0.076 4.076 23 N -0.969 5.969 24 Si 0.973 3.027 25 H -0.272 1.272 26 H -0.293 1.293 27 H -0.284 1.284 28 H 0.067 0.933 29 H 0.055 0.945 30 H 0.080 0.920 31 H 0.114 0.886 32 H 0.099 0.901 33 H 0.129 0.871 34 H 0.139 0.861 35 H 0.069 0.931 36 H 0.061 0.939 37 H 0.169 0.831 38 H 0.174 0.826 39 H 0.428 0.572 40 H 0.428 0.572 41 H 0.079 0.921 42 H 0.036 0.964 43 H 0.083 0.917 44 H 0.027 0.973 45 H 0.068 0.932 46 H -0.002 1.002 47 H 0.025 0.975 48 H 0.375 0.625 49 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.449 6.890 -31.084 33.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.111 4.111 3 H 0.100 0.900 4 C -0.016 4.016 5 N -0.355 5.355 6 C 0.302 3.698 7 O -0.483 6.483 8 C -0.153 4.153 9 C -0.154 4.154 10 C -0.736 4.736 11 S 2.720 3.280 12 N -0.907 5.907 13 O -0.997 6.997 14 O -0.994 6.994 15 C -0.012 4.012 16 C -0.070 4.070 17 C -0.184 4.184 18 C 0.043 3.957 19 N -0.383 5.383 20 C -0.379 4.379 21 H 0.088 0.912 22 C -0.268 4.268 23 N -0.619 5.619 24 Si 0.802 3.198 25 H -0.198 1.198 26 H -0.219 1.219 27 H -0.210 1.210 28 H 0.086 0.914 29 H 0.074 0.926 30 H 0.099 0.901 31 H 0.133 0.867 32 H 0.117 0.883 33 H 0.147 0.853 34 H 0.156 0.844 35 H 0.088 0.912 36 H 0.079 0.921 37 H 0.187 0.813 38 H 0.192 0.808 39 H 0.259 0.741 40 H 0.258 0.742 41 H 0.097 0.903 42 H 0.055 0.945 43 H 0.102 0.898 44 H 0.046 0.954 45 H 0.087 0.913 46 H 0.016 0.984 47 H 0.042 0.958 48 H 0.208 0.792 49 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -8.063 6.146 -30.221 31.876 hybrid contribution 0.613 0.084 1.249 1.394 sum -7.451 6.231 -28.971 30.556 Atomic orbital electron populations 1.21865 0.91706 1.02971 1.02836 1.22149 0.97936 0.99085 0.91949 0.90006 1.22853 0.85609 0.96234 0.96948 1.49129 1.13914 1.55327 1.17117 1.21422 0.79801 0.79249 0.89372 1.90752 1.43190 1.44780 1.69596 1.21659 0.98400 1.04683 0.90589 1.21112 0.98491 1.01943 0.93885 1.30497 1.23692 1.14156 1.05279 1.04090 0.77671 0.72770 0.73467 1.52984 1.84190 1.28553 1.24986 1.93575 1.58770 1.74857 1.72528 1.93566 1.87217 1.33684 1.84946 1.22417 0.98088 0.97013 0.83641 1.21682 0.95026 0.94632 0.95662 1.21821 0.96547 1.01330 0.98716 1.20782 0.93840 0.93700 0.87410 1.42587 1.57021 1.12795 1.25935 1.19558 1.20374 0.95867 1.02070 0.91164 1.25568 1.03184 0.96811 1.01273 1.69807 1.50566 1.09825 1.31735 0.85220 0.78804 0.77360 0.78446 1.19793 1.21931 1.21021 0.91375 0.92557 0.90084 0.86734 0.88251 0.85348 0.84350 0.91184 0.92065 0.81269 0.80775 0.74097 0.74151 0.90299 0.94534 0.89791 0.95392 0.91319 0.98411 0.95757 0.79191 0.94010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 7.93 71.98 0.57 -1.20 16 2 C -0.09 -1.73 3.30 -9.89 -0.03 -1.76 16 3 H 0.08 1.59 7.72 -2.39 -0.02 1.57 16 4 C 0.10 1.56 6.45 86.53 0.56 2.12 16 5 N -0.62 -16.75 3.31 -807.14 -2.67 -19.43 16 6 C 0.51 15.28 7.91 87.66 0.69 15.97 16 7 O -0.60 -26.09 16.25 -3.05 -0.05 -26.14 16 8 C -0.11 -1.74 4.68 29.85 0.14 -1.60 16 9 C -0.11 -2.12 4.51 30.59 0.14 -1.98 16 10 C -0.60 -4.34 6.18 71.98 0.44 -3.90 16 11 S 2.63 38.39 5.97 -56.49 -0.34 38.05 16 12 N -1.23 -6.08 9.36 37.02 0.35 -5.73 16 13 O -1.01 -25.13 18.10 -127.65 -2.31 -27.44 16 14 O -1.00 -23.82 18.10 -127.65 -2.31 -26.13 16 15 C 0.11 3.81 5.93 86.68 0.51 4.32 16 16 C -0.07 -2.07 0.74 -51.14 -0.04 -2.11 16 17 C -0.13 -3.62 7.11 71.98 0.51 -3.11 16 18 C 0.17 7.02 4.96 86.38 0.43 7.45 16 19 N -0.74 -39.67 4.80 -343.44 -1.65 -41.32 16 20 C -0.25 -14.66 9.99 84.03 0.84 -13.82 16 21 H 0.07 4.03 7.83 -2.91 -0.02 4.01 16 22 C -0.08 -4.63 5.50 84.86 0.47 -4.16 16 23 N -0.97 -62.40 13.06 21.65 0.28 -62.12 16 24 Si 0.97 48.87 29.55 68.60 2.03 50.90 16 25 H -0.27 -12.90 7.11 99.48 0.71 -12.20 16 26 H -0.29 -14.72 7.11 99.48 0.71 -14.01 16 27 H -0.28 -14.01 7.11 99.48 0.71 -13.30 16 28 H 0.07 0.82 6.61 -2.39 -0.02 0.81 16 29 H 0.06 0.85 6.98 -2.39 -0.02 0.84 16 30 H 0.08 0.64 8.14 -2.38 -0.02 0.62 16 31 H 0.11 0.87 7.30 -2.39 -0.02 0.86 16 32 H 0.10 1.03 7.87 -2.39 -0.02 1.01 16 33 H 0.13 1.20 7.95 -2.39 -0.02 1.18 16 34 H 0.14 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.07 1.54 8.10 -2.39 -0.02 1.52 16 36 H 0.06 1.47 8.10 -2.38 -0.02 1.46 16 37 H 0.17 0.14 8.14 -2.39 -0.02 0.12 16 38 H 0.17 -0.08 8.14 -2.39 -0.02 -0.10 16 39 H 0.43 0.50 8.96 -96.74 -0.87 -0.37 16 40 H 0.43 0.73 8.96 -96.74 -0.87 -0.14 16 41 H 0.08 2.41 7.84 -2.39 -0.02 2.39 16 42 H 0.04 1.70 6.96 -2.39 -0.02 1.68 16 43 H 0.08 1.81 6.67 -2.39 -0.02 1.80 16 44 H 0.03 1.02 6.75 -2.38 -0.02 1.00 16 45 H 0.07 1.82 6.89 -2.39 -0.02 1.80 16 46 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 47 H 0.02 0.99 8.14 -2.38 -0.02 0.97 16 48 H 0.37 21.30 5.99 -92.71 -0.56 20.74 16 49 H 0.25 15.69 8.31 -92.71 -0.77 14.92 16 Total: -1.00 -100.38 399.68 -2.75 -103.13 By element: Atomic # 1 Polarization: 21.31 SS G_CDS: -1.31 Total: 20.01 kcal Atomic # 6 Polarization: -9.02 SS G_CDS: 5.24 Total: -3.78 kcal Atomic # 7 Polarization: -124.90 SS G_CDS: -3.69 Total: -128.59 kcal Atomic # 8 Polarization: -75.04 SS G_CDS: -4.67 Total: -79.72 kcal Atomic # 14 Polarization: 48.87 SS G_CDS: 2.03 Total: 50.90 kcal Atomic # 16 Polarization: 38.39 SS G_CDS: -0.34 Total: 38.05 kcal Total: -100.38 -2.75 -103.13 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182421095.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.394 kcal (2) G-P(sol) polarization free energy of solvation -100.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -103.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds