Wall clock time and date at job start Wed Apr 1 2020 05:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 110.39293 * 2 1 4 4 C 1.54792 * 110.52166 * 237.82641 * 2 1 3 5 5 N 1.48146 * 104.42067 * 265.22718 * 4 2 1 6 6 C 1.34772 * 127.83952 * 140.36940 * 5 4 2 7 7 O 1.21289 * 119.99942 * 179.67889 * 6 5 4 8 8 C 1.50697 * 120.00088 * 359.67807 * 6 5 4 9 9 S 1.81401 * 109.47051 * 180.02562 * 8 6 5 10 10 O 1.42103 * 110.54248 * 68.37979 * 9 8 6 11 11 O 1.42098 * 110.54505 * 291.62108 * 9 8 6 12 12 N 1.65611 * 104.44809 * 180.02562 * 9 8 6 13 13 C 1.46499 * 119.99775 * 90.00175 * 12 9 8 14 14 C 1.46499 * 119.99954 * 269.99928 * 12 9 8 15 15 C 1.48148 * 104.32130 * 320.10405 * 5 4 2 16 16 C 1.54282 * 110.34313 * 122.23745 * 2 1 3 17 17 C 1.52997 * 110.34402 * 359.97438 * 16 2 1 18 18 C 1.53011 * 110.33944 * 237.73794 * 16 2 1 19 19 N 1.46503 * 109.46773 * 183.00697 * 18 16 2 20 20 C 1.36935 * 119.99521 * 179.97438 * 19 18 16 21 21 H 1.08004 * 120.00092 * 0.02562 * 20 19 18 22 22 C 1.38813 * 119.99712 * 180.02562 * 20 19 18 23 23 N 1.31619 * 120.00197 * 0.02562 * 22 20 19 24 24 Si 1.86808 * 119.99844 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47218 * 89.99797 * 24 22 20 26 26 H 1.48497 * 109.46908 * 210.00335 * 24 22 20 27 27 H 1.48504 * 109.46793 * 329.99833 * 24 22 20 28 28 H 1.09003 * 109.46881 * 297.76895 * 1 2 3 29 29 H 1.09003 * 109.46959 * 57.76376 * 1 2 3 30 30 H 1.08998 * 109.47026 * 177.76870 * 1 2 3 31 31 H 1.09004 * 110.54070 * 146.48240 * 4 2 1 32 32 H 1.09000 * 110.46870 * 23.92571 * 4 2 1 33 33 H 1.09006 * 109.46934 * 60.00396 * 8 6 5 34 34 H 1.09001 * 109.47240 * 299.99985 * 8 6 5 35 35 H 1.09002 * 109.47391 * 359.97438 * 13 12 9 36 36 H 1.09001 * 109.46813 * 239.99954 * 13 12 9 37 37 H 1.09004 * 109.47041 * 120.00081 * 13 12 9 38 38 H 1.08994 * 109.47057 * 270.00018 * 14 12 9 39 39 H 1.09006 * 109.46711 * 30.00180 * 14 12 9 40 40 H 1.08998 * 109.46853 * 149.99973 * 14 12 9 41 41 H 1.09002 * 110.40549 * 158.62771 * 15 5 4 42 42 H 1.08995 * 110.41140 * 280.94844 * 15 5 4 43 43 H 1.09000 * 109.47355 * 176.99260 * 17 16 2 44 44 H 1.09000 * 109.47350 * 296.99186 * 17 16 2 45 45 H 1.09002 * 109.47078 * 56.99690 * 17 16 2 46 46 H 1.08999 * 109.47097 * 303.00814 * 18 16 2 47 47 H 1.08994 * 109.46941 * 63.00652 * 18 16 2 48 48 H 0.97000 * 120.00339 * 359.97438 * 19 18 16 49 49 H 0.96996 * 119.99633 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9098 1.0217 0.0000 4 6 2.0727 -0.7719 -1.2271 5 7 2.3138 -2.1439 -0.7228 6 6 2.0772 -3.3105 -1.3547 7 8 2.3359 -4.3608 -0.8060 8 6 1.4912 -3.3101 -2.7431 9 16 1.2926 -5.0197 -3.3161 10 8 0.2819 -5.6821 -2.5683 11 8 2.5606 -5.6244 -3.5302 12 7 0.6486 -4.8743 -4.8349 13 6 1.5326 -4.7806 -5.9994 14 6 -0.8050 -4.8394 -5.0139 15 6 2.8802 -1.9423 0.6312 16 6 2.0664 -0.7717 1.2236 17 6 0.9062 -1.3032 2.0676 18 6 2.9693 0.1305 2.0674 19 7 3.5246 -0.6402 3.1827 20 6 4.3679 -0.0382 4.0780 21 1 4.6233 1.0047 3.9622 22 6 4.8944 -0.7686 5.1345 23 7 4.5835 -2.0398 5.2754 24 14 6.0443 0.0527 6.3564 25 1 5.2516 0.6266 7.4734 26 1 6.9978 -0.9522 6.8912 27 1 6.7974 1.1366 5.6758 28 1 -0.3633 0.4788 0.9093 29 1 -0.3633 0.5482 -0.8693 30 1 -0.3633 -1.0269 -0.0400 31 1 3.0037 -0.3267 -1.5779 32 1 1.3321 -0.7857 -2.0267 33 1 2.1585 -2.7752 -3.4189 34 1 0.5190 -2.8175 -2.7270 35 1 2.5713 -4.8232 -5.6715 36 1 1.3536 -3.8379 -6.5165 37 1 1.3307 -5.6106 -6.6766 38 1 -1.1786 -5.8541 -5.1507 39 1 -1.2690 -4.3970 -4.1324 40 1 -1.0486 -4.2410 -5.8918 41 1 2.7494 -2.8401 1.2354 42 1 3.9359 -1.6792 0.5664 43 1 1.2997 -1.8902 2.8974 44 1 0.3270 -0.4661 2.4573 45 1 0.2654 -1.9320 1.4494 46 1 3.7819 0.5118 1.4490 47 1 2.3868 0.9653 2.4569 48 1 3.2949 -1.5768 3.2869 49 1 4.9518 -2.5502 6.0135 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001183297542.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:08 Heat of formation + Delta-G solvation = -77.919486 kcal Electronic energy + Delta-G solvation = -30017.025164 eV Core-core repulsion = 25914.410399 eV Total energy + Delta-G solvation = -4102.614766 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -40.50741 -38.55075 -37.37869 -36.63654 -36.03452 -34.91805 -33.30194 -31.60200 -30.90473 -29.56283 -28.55551 -27.33687 -25.66081 -25.43504 -25.04096 -23.30110 -21.32689 -19.97369 -19.08890 -18.60705 -18.23327 -17.28795 -16.92769 -16.83514 -16.57157 -16.13639 -15.29382 -15.17603 -14.84160 -14.61104 -14.40796 -14.24017 -14.06549 -13.56274 -13.35307 -13.17673 -13.09756 -13.01572 -12.93146 -12.78106 -12.57164 -12.32494 -12.25507 -12.11150 -11.93677 -11.86869 -11.61866 -11.42568 -11.36284 -11.28008 -11.02527 -10.82072 -10.50889 -10.41736 -10.28990 -10.23149 -9.92884 -9.64430 -9.55698 -8.89695 -8.79758 -6.93305 -5.76002 -3.05553 -0.17401 2.28421 2.30994 2.73205 3.43793 3.48574 3.50965 3.59283 3.81470 3.92186 4.31286 4.44625 4.45969 4.53931 4.69245 4.74628 4.81313 4.87968 4.92573 5.08976 5.17627 5.30745 5.33558 5.34398 5.35344 5.40270 5.46059 5.50668 5.58668 5.69545 5.80884 5.90618 5.91181 6.01872 6.03387 6.09838 6.15095 6.19531 6.38802 6.49858 6.62176 6.71822 6.81299 7.35830 7.69287 7.79315 8.42144 9.53537 10.10125 10.44398 11.46505 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.019323 B = 0.002510 C = 0.002360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.713541 B =11150.954515 C =11860.679724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.098 4.098 3 H 0.091 0.909 4 C 0.100 3.900 5 N -0.607 5.607 6 C 0.559 3.441 7 O -0.535 6.535 8 C -0.670 4.670 9 S 2.642 3.358 10 O -0.934 6.934 11 O -0.935 6.935 12 N -1.011 6.011 13 C 0.082 3.918 14 C 0.091 3.909 15 C 0.116 3.884 16 C -0.075 4.075 17 C -0.133 4.133 18 C 0.169 3.831 19 N -0.731 5.731 20 C -0.242 4.242 21 H 0.070 0.930 22 C -0.012 4.012 23 N -0.930 5.930 24 Si 0.907 3.093 25 H -0.290 1.290 26 H -0.291 1.291 27 H -0.282 1.282 28 H 0.065 0.935 29 H 0.050 0.950 30 H 0.057 0.943 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.157 0.843 34 H 0.156 0.844 35 H 0.087 0.913 36 H 0.061 0.939 37 H 0.067 0.933 38 H 0.062 0.938 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.090 0.910 42 H 0.084 0.916 43 H 0.067 0.933 44 H 0.058 0.942 45 H 0.048 0.952 46 H 0.020 0.980 47 H 0.023 0.977 48 H 0.385 0.615 49 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.564 2.007 -26.180 29.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.118 4.118 3 H 0.109 0.891 4 C -0.023 4.023 5 N -0.340 5.340 6 C 0.345 3.655 7 O -0.413 6.413 8 C -0.798 4.798 9 S 2.729 3.271 10 O -0.923 6.923 11 O -0.925 6.925 12 N -0.851 5.851 13 C -0.063 4.063 14 C -0.054 4.054 15 C -0.005 4.005 16 C -0.077 4.077 17 C -0.191 4.191 18 C 0.041 3.959 19 N -0.376 5.376 20 C -0.373 4.373 21 H 0.088 0.912 22 C -0.208 4.208 23 N -0.579 5.579 24 Si 0.738 3.262 25 H -0.218 1.218 26 H -0.218 1.218 27 H -0.208 1.208 28 H 0.084 0.916 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.175 0.825 34 H 0.174 0.826 35 H 0.106 0.894 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.091 0.909 40 H 0.092 0.908 41 H 0.109 0.891 42 H 0.102 0.898 43 H 0.086 0.914 44 H 0.077 0.923 45 H 0.067 0.933 46 H 0.038 0.962 47 H 0.041 0.959 48 H 0.220 0.780 49 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -12.138 0.694 -25.433 28.190 hybrid contribution 0.503 1.140 0.527 1.353 sum -11.635 1.833 -24.906 27.551 Atomic orbital electron populations 1.21927 0.94437 1.01895 1.01818 1.22221 0.96305 0.99634 0.93605 0.89092 1.22696 1.00885 0.81520 0.97155 1.48842 1.61810 1.04979 1.18353 1.18612 0.78591 0.83366 0.84948 1.90893 1.53377 1.29840 1.67207 1.31156 1.11645 1.31681 1.05268 1.04457 0.74318 0.75913 0.72427 1.93596 1.58929 1.69438 1.70385 1.93588 1.43061 1.71912 1.83939 1.57601 1.14200 1.89913 1.23364 1.21619 0.94265 1.02216 0.88197 1.21501 0.78258 1.02814 1.02841 1.22641 0.97579 0.99471 0.80811 1.21730 0.96336 0.95051 0.94556 1.21883 0.96783 1.00856 0.99535 1.20708 0.93271 0.92797 0.89141 1.42393 1.55850 1.11101 1.28244 1.19183 1.19690 0.94679 1.03793 0.91238 1.24747 1.00991 0.95892 0.99192 1.69655 1.48348 1.06973 1.32885 0.86204 0.80461 0.78104 0.81464 1.21760 1.21780 1.20823 0.91578 0.93118 0.92407 0.90356 0.90401 0.82519 0.82581 0.89424 0.92022 0.91433 0.91939 0.90923 0.90828 0.89130 0.89750 0.91383 0.92317 0.93268 0.96190 0.95879 0.78025 0.93415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 7.94 37.16 0.30 -1.05 16 2 C -0.10 -1.06 3.31 -89.00 -0.29 -1.36 16 3 H 0.09 0.91 7.71 -51.93 -0.40 0.51 16 4 C 0.10 0.97 6.49 -2.19 -0.01 0.96 16 5 N -0.61 -8.30 3.31 -169.05 -0.56 -8.86 16 6 C 0.56 8.24 7.93 -10.99 -0.09 8.15 16 7 O -0.54 -10.42 16.13 5.55 0.09 -10.34 16 8 C -0.67 -6.08 5.63 36.00 0.20 -5.87 16 9 S 2.64 31.09 4.50 -107.50 -0.48 30.61 16 10 O -0.93 -14.23 17.09 -57.55 -0.98 -15.21 16 11 O -0.94 -14.19 16.57 -57.55 -0.95 -15.14 16 12 N -1.01 -7.49 3.52 -129.20 -0.45 -7.94 16 13 C 0.08 0.44 10.62 59.85 0.64 1.07 16 14 C 0.09 0.49 10.24 59.85 0.61 1.10 16 15 C 0.12 1.92 5.54 -2.41 -0.01 1.91 16 16 C -0.08 -1.14 0.73 -153.10 -0.11 -1.25 16 17 C -0.13 -2.08 7.08 37.16 0.26 -1.81 16 18 C 0.17 3.15 4.85 -4.03 -0.02 3.13 16 19 N -0.73 -17.82 5.12 -59.90 -0.31 -18.13 16 20 C -0.24 -6.65 9.99 -15.06 -0.15 -6.80 16 21 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 22 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 23 N -0.93 -28.23 13.06 55.49 0.72 -27.50 16 24 Si 0.91 22.40 29.55 -169.99 -5.02 17.37 16 25 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 26 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 27 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 28 H 0.07 0.65 6.89 -51.93 -0.36 0.30 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.58 6.72 -51.93 -0.35 0.23 16 31 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.08 0.52 7.04 -51.93 -0.37 0.15 16 33 H 0.16 0.87 8.14 -51.92 -0.42 0.44 16 34 H 0.16 0.87 7.96 -51.92 -0.41 0.46 16 35 H 0.09 0.52 6.87 -51.93 -0.36 0.17 16 36 H 0.06 0.17 8.14 -51.93 -0.42 -0.26 16 37 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.07 0.34 7.79 -51.93 -0.40 -0.06 16 40 H 0.07 0.20 8.07 -51.93 -0.42 -0.22 16 41 H 0.09 1.74 7.60 -51.93 -0.39 1.35 16 42 H 0.08 1.48 7.87 -51.93 -0.41 1.07 16 43 H 0.07 1.26 7.01 -51.93 -0.36 0.90 16 44 H 0.06 0.85 6.98 -51.93 -0.36 0.49 16 45 H 0.05 0.71 6.61 -51.93 -0.34 0.36 16 46 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 47 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.39 10.00 6.28 -40.82 -0.26 9.74 16 49 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 398.72 15.07 6.01 6.01 Total: -1.00 -38.29 398.72 -8.84 -47.13 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -8.12 Total: 4.25 kcal Atomic # 6 Polarization: -3.48 SS G_CDS: 1.22 Total: -2.26 kcal Atomic # 7 Polarization: -61.83 SS G_CDS: -0.60 Total: -62.43 kcal Atomic # 8 Polarization: -38.84 SS G_CDS: -1.85 Total: -40.69 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.37 kcal Atomic # 16 Polarization: 31.09 SS G_CDS: -0.48 Total: 30.61 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -38.29 -8.84 -47.13 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183297542.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.785 kcal (2) G-P(sol) polarization free energy of solvation -38.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds