Wall clock time and date at job start Wed Apr 1 2020 05:12:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 110.39293 * 2 1 4 4 C 1.54792 * 110.52166 * 237.82641 * 2 1 3 5 5 N 1.48146 * 104.42067 * 265.22718 * 4 2 1 6 6 C 1.34772 * 127.83952 * 140.36940 * 5 4 2 7 7 O 1.21289 * 119.99942 * 179.67889 * 6 5 4 8 8 C 1.50697 * 120.00088 * 359.67807 * 6 5 4 9 9 S 1.81401 * 109.47051 * 180.02562 * 8 6 5 10 10 O 1.42103 * 110.54248 * 68.37979 * 9 8 6 11 11 O 1.42098 * 110.54505 * 291.62108 * 9 8 6 12 12 N 1.65611 * 104.44809 * 180.02562 * 9 8 6 13 13 C 1.46499 * 119.99775 * 90.00175 * 12 9 8 14 14 C 1.46499 * 119.99954 * 269.99928 * 12 9 8 15 15 C 1.48148 * 104.32130 * 320.10405 * 5 4 2 16 16 C 1.54282 * 110.34313 * 122.23745 * 2 1 3 17 17 C 1.52997 * 110.34402 * 359.97438 * 16 2 1 18 18 C 1.53011 * 110.33944 * 237.73794 * 16 2 1 19 19 N 1.46503 * 109.46773 * 183.00697 * 18 16 2 20 20 C 1.36935 * 119.99521 * 179.97438 * 19 18 16 21 21 H 1.08004 * 120.00092 * 0.02562 * 20 19 18 22 22 C 1.38813 * 119.99712 * 180.02562 * 20 19 18 23 23 N 1.31619 * 120.00197 * 0.02562 * 22 20 19 24 24 Si 1.86808 * 119.99844 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47218 * 89.99797 * 24 22 20 26 26 H 1.48497 * 109.46908 * 210.00335 * 24 22 20 27 27 H 1.48504 * 109.46793 * 329.99833 * 24 22 20 28 28 H 1.09003 * 109.46881 * 297.76895 * 1 2 3 29 29 H 1.09003 * 109.46959 * 57.76376 * 1 2 3 30 30 H 1.08998 * 109.47026 * 177.76870 * 1 2 3 31 31 H 1.09004 * 110.54070 * 146.48240 * 4 2 1 32 32 H 1.09000 * 110.46870 * 23.92571 * 4 2 1 33 33 H 1.09006 * 109.46934 * 60.00396 * 8 6 5 34 34 H 1.09001 * 109.47240 * 299.99985 * 8 6 5 35 35 H 1.09002 * 109.47391 * 359.97438 * 13 12 9 36 36 H 1.09001 * 109.46813 * 239.99954 * 13 12 9 37 37 H 1.09004 * 109.47041 * 120.00081 * 13 12 9 38 38 H 1.08994 * 109.47057 * 270.00018 * 14 12 9 39 39 H 1.09006 * 109.46711 * 30.00180 * 14 12 9 40 40 H 1.08998 * 109.46853 * 149.99973 * 14 12 9 41 41 H 1.09002 * 110.40549 * 158.62771 * 15 5 4 42 42 H 1.08995 * 110.41140 * 280.94844 * 15 5 4 43 43 H 1.09000 * 109.47355 * 176.99260 * 17 16 2 44 44 H 1.09000 * 109.47350 * 296.99186 * 17 16 2 45 45 H 1.09002 * 109.47078 * 56.99690 * 17 16 2 46 46 H 1.08999 * 109.47097 * 303.00814 * 18 16 2 47 47 H 1.08994 * 109.46941 * 63.00652 * 18 16 2 48 48 H 0.97000 * 120.00339 * 359.97438 * 19 18 16 49 49 H 0.96996 * 119.99633 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9098 1.0217 0.0000 4 6 2.0727 -0.7719 -1.2271 5 7 2.3138 -2.1439 -0.7228 6 6 2.0772 -3.3105 -1.3547 7 8 2.3359 -4.3608 -0.8060 8 6 1.4912 -3.3101 -2.7431 9 16 1.2926 -5.0197 -3.3161 10 8 0.2819 -5.6821 -2.5683 11 8 2.5606 -5.6244 -3.5302 12 7 0.6486 -4.8743 -4.8349 13 6 1.5326 -4.7806 -5.9994 14 6 -0.8050 -4.8394 -5.0139 15 6 2.8802 -1.9423 0.6312 16 6 2.0664 -0.7717 1.2236 17 6 0.9062 -1.3032 2.0676 18 6 2.9693 0.1305 2.0674 19 7 3.5246 -0.6402 3.1827 20 6 4.3679 -0.0382 4.0780 21 1 4.6233 1.0047 3.9622 22 6 4.8944 -0.7686 5.1345 23 7 4.5835 -2.0398 5.2754 24 14 6.0443 0.0527 6.3564 25 1 5.2516 0.6266 7.4734 26 1 6.9978 -0.9522 6.8912 27 1 6.7974 1.1366 5.6758 28 1 -0.3633 0.4788 0.9093 29 1 -0.3633 0.5482 -0.8693 30 1 -0.3633 -1.0269 -0.0400 31 1 3.0037 -0.3267 -1.5779 32 1 1.3321 -0.7857 -2.0267 33 1 2.1585 -2.7752 -3.4189 34 1 0.5190 -2.8175 -2.7270 35 1 2.5713 -4.8232 -5.6715 36 1 1.3536 -3.8379 -6.5165 37 1 1.3307 -5.6106 -6.6766 38 1 -1.1786 -5.8541 -5.1507 39 1 -1.2690 -4.3970 -4.1324 40 1 -1.0486 -4.2410 -5.8918 41 1 2.7494 -2.8401 1.2354 42 1 3.9359 -1.6792 0.5664 43 1 1.2997 -1.8902 2.8974 44 1 0.3270 -0.4661 2.4573 45 1 0.2654 -1.9320 1.4494 46 1 3.7819 0.5118 1.4490 47 1 2.3868 0.9653 2.4569 48 1 3.2949 -1.5768 3.2869 49 1 4.9518 -2.5502 6.0135 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001183297542.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:07 Heat of formation + Delta-G solvation = -109.004509 kcal Electronic energy + Delta-G solvation = -30018.373112 eV Core-core repulsion = 25914.410399 eV Total energy + Delta-G solvation = -4103.962713 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.63204 -39.76077 -38.37282 -37.28699 -36.89357 -36.54358 -34.73854 -33.08803 -31.96849 -30.99804 -28.93687 -28.48452 -27.02732 -26.66831 -25.57617 -25.02297 -22.57582 -20.99709 -20.02643 -19.79790 -19.24975 -18.85130 -17.92438 -17.74618 -17.61644 -17.14891 -16.56708 -16.29709 -15.92458 -15.63479 -15.40444 -15.33624 -15.33204 -14.83920 -14.74954 -14.39914 -14.01735 -13.97096 -13.78147 -13.51958 -13.49686 -13.35730 -13.23423 -13.20286 -13.05340 -12.87309 -12.64299 -12.60165 -12.54214 -12.50528 -12.43124 -12.16556 -12.09717 -11.96753 -11.53330 -11.49969 -11.35055 -11.21851 -10.93442 -10.05690 -9.93832 -8.98311 -7.94121 -5.22819 -1.01846 1.20988 1.46141 1.48098 1.50267 1.56507 1.79704 2.55888 2.75826 3.03180 3.06507 3.39403 3.51356 3.51969 3.75748 3.84392 3.85690 4.12887 4.15956 4.24799 4.26129 4.33184 4.50902 4.51930 4.61337 4.62158 4.65417 4.75046 4.78717 4.82105 4.86729 4.98884 4.99830 5.00877 5.02534 5.06352 5.07019 5.12456 5.25690 5.37596 5.42068 5.50863 5.55832 5.59583 6.27358 6.29825 6.70363 7.33802 8.11478 8.32285 9.29587 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.019323 B = 0.002510 C = 0.002360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.713541 B =11150.954515 C =11860.679724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.091 4.091 3 H 0.110 0.890 4 C 0.096 3.904 5 N -0.604 5.604 6 C 0.543 3.457 7 O -0.599 6.599 8 C -0.647 4.647 9 S 2.636 3.364 10 O -0.983 6.983 11 O -0.985 6.985 12 N -1.001 6.001 13 C 0.073 3.927 14 C 0.080 3.920 15 C 0.117 3.883 16 C -0.068 4.068 17 C -0.126 4.126 18 C 0.167 3.833 19 N -0.746 5.746 20 C -0.239 4.239 21 H 0.080 0.920 22 C -0.080 4.080 23 N -0.973 5.973 24 Si 0.973 3.027 25 H -0.287 1.287 26 H -0.301 1.301 27 H -0.266 1.266 28 H 0.058 0.942 29 H 0.086 0.914 30 H 0.048 0.952 31 H 0.097 0.903 32 H 0.126 0.874 33 H 0.204 0.796 34 H 0.204 0.796 35 H 0.076 0.924 36 H 0.100 0.900 37 H 0.072 0.928 38 H 0.052 0.948 39 H 0.079 0.921 40 H 0.110 0.890 41 H 0.046 0.954 42 H 0.068 0.932 43 H 0.024 0.976 44 H 0.070 0.930 45 H 0.060 0.940 46 H 0.029 0.971 47 H 0.031 0.969 48 H 0.372 0.628 49 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.037 5.871 -29.727 33.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.110 4.110 3 H 0.128 0.872 4 C -0.025 4.025 5 N -0.335 5.335 6 C 0.331 3.669 7 O -0.482 6.482 8 C -0.776 4.776 9 S 2.728 3.272 10 O -0.973 6.973 11 O -0.974 6.974 12 N -0.843 5.843 13 C -0.072 4.072 14 C -0.064 4.064 15 C -0.006 4.006 16 C -0.070 4.070 17 C -0.183 4.183 18 C 0.041 3.959 19 N -0.389 5.389 20 C -0.371 4.371 21 H 0.098 0.902 22 C -0.272 4.272 23 N -0.624 5.624 24 Si 0.802 3.198 25 H -0.214 1.214 26 H -0.228 1.228 27 H -0.191 1.191 28 H 0.077 0.923 29 H 0.105 0.895 30 H 0.068 0.932 31 H 0.115 0.885 32 H 0.144 0.856 33 H 0.221 0.779 34 H 0.221 0.779 35 H 0.095 0.905 36 H 0.118 0.882 37 H 0.091 0.909 38 H 0.071 0.929 39 H 0.097 0.903 40 H 0.128 0.872 41 H 0.065 0.935 42 H 0.086 0.914 43 H 0.043 0.957 44 H 0.089 0.911 45 H 0.079 0.921 46 H 0.047 0.953 47 H 0.049 0.951 48 H 0.204 0.796 49 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -13.636 4.608 -29.046 32.417 hybrid contribution 0.920 0.013 1.545 1.798 sum -12.716 4.621 -27.501 30.649 Atomic orbital electron populations 1.21926 0.92849 1.01913 1.03224 1.22256 0.97547 0.99903 0.91289 0.87212 1.23100 1.03293 0.78453 0.97625 1.48906 1.60820 1.06695 1.17032 1.19569 0.77963 0.82565 0.86753 1.90875 1.55901 1.32205 1.69173 1.30984 1.14782 1.30036 1.01802 1.04079 0.72944 0.77063 0.73153 1.93531 1.59839 1.71757 1.72174 1.93524 1.45022 1.74099 1.84798 1.57228 1.15272 1.89863 1.21889 1.21894 0.93347 1.04544 0.87395 1.21793 0.76638 1.03211 1.04803 1.22341 0.97346 0.98250 0.82637 1.21616 0.95111 0.94387 0.95845 1.21805 0.97178 1.00845 0.98457 1.20916 0.93972 0.93053 0.88007 1.42656 1.55739 1.10991 1.29464 1.19654 1.18767 0.95037 1.03632 0.90180 1.25596 1.03458 0.96520 1.01636 1.69841 1.50294 1.08646 1.33629 0.85139 0.78327 0.77159 0.79131 1.21430 1.22758 1.19073 0.92327 0.89487 0.93248 0.88512 0.85613 0.77901 0.77906 0.90546 0.88202 0.90909 0.92916 0.90262 0.87151 0.93539 0.91398 0.95711 0.91062 0.92128 0.95284 0.95076 0.79558 0.94231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 7.94 71.98 0.57 -1.43 16 2 C -0.09 -1.60 3.31 -9.75 -0.03 -1.63 16 3 H 0.11 1.62 7.71 -2.39 -0.02 1.60 16 4 C 0.10 1.38 6.49 86.67 0.56 1.94 16 5 N -0.60 -15.52 3.31 -807.15 -2.67 -18.19 16 6 C 0.54 15.55 7.93 87.66 0.70 16.24 16 7 O -0.60 -24.69 16.13 -3.06 -0.05 -24.74 16 8 C -0.65 -9.43 5.63 71.24 0.40 -9.03 16 9 S 2.64 60.62 4.50 -56.49 -0.25 60.36 16 10 O -0.98 -30.90 17.09 -127.64 -2.18 -33.08 16 11 O -0.98 -30.96 16.57 -127.64 -2.11 -33.08 16 12 N -1.00 -12.37 3.52 -562.69 -1.98 -14.35 16 13 C 0.07 0.56 10.62 127.77 1.36 1.92 16 14 C 0.08 0.62 10.24 127.77 1.31 1.92 16 15 C 0.12 4.01 5.54 86.53 0.48 4.49 16 16 C -0.07 -2.01 0.73 -51.27 -0.04 -2.05 16 17 C -0.13 -3.98 7.08 71.98 0.51 -3.47 16 18 C 0.17 6.14 4.85 86.38 0.42 6.55 16 19 N -0.75 -37.41 5.12 -343.43 -1.76 -39.17 16 20 C -0.24 -13.26 9.99 84.03 0.84 -12.42 16 21 H 0.08 4.19 7.83 -2.91 -0.02 4.16 16 22 C -0.08 -4.68 5.50 84.86 0.47 -4.22 16 23 N -0.97 -61.65 13.06 21.65 0.28 -61.37 16 24 Si 0.97 46.86 29.55 68.60 2.03 48.88 16 25 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 26 H -0.30 -14.79 7.11 99.48 0.71 -14.08 16 27 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 28 H 0.06 0.94 6.89 -2.39 -0.02 0.92 16 29 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.05 0.80 6.72 -2.39 -0.02 0.78 16 31 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.13 0.69 7.04 -2.39 -0.02 0.67 16 33 H 0.20 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.20 1.03 7.96 -2.39 -0.02 1.01 16 35 H 0.08 0.79 6.87 -2.39 -0.02 0.78 16 36 H 0.10 0.04 8.14 -2.39 -0.02 0.02 16 37 H 0.07 0.50 8.14 -2.38 -0.02 0.48 16 38 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 39 H 0.08 0.52 7.79 -2.38 -0.02 0.50 16 40 H 0.11 0.06 8.07 -2.39 -0.02 0.04 16 41 H 0.05 1.97 7.60 -2.39 -0.02 1.95 16 42 H 0.07 2.49 7.87 -2.39 -0.02 2.48 16 43 H 0.02 0.97 7.01 -2.39 -0.02 0.95 16 44 H 0.07 2.03 6.98 -2.39 -0.02 2.02 16 45 H 0.06 1.75 6.61 -2.39 -0.02 1.73 16 46 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 47 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 48 H 0.37 20.54 6.28 -92.71 -0.58 19.96 16 49 H 0.25 15.40 8.31 -92.71 -0.77 14.63 16 Total: -1.00 -93.15 398.72 -0.80 -93.95 By element: Atomic # 1 Polarization: 21.58 SS G_CDS: 0.36 Total: 21.95 kcal Atomic # 6 Polarization: -8.71 SS G_CDS: 7.54 Total: -1.17 kcal Atomic # 7 Polarization: -126.95 SS G_CDS: -6.13 Total: -133.07 kcal Atomic # 8 Polarization: -86.55 SS G_CDS: -4.35 Total: -90.90 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 2.03 Total: 48.88 kcal Atomic # 16 Polarization: 60.62 SS G_CDS: -0.25 Total: 60.36 kcal Total: -93.15 -0.80 -93.95 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183297542.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.054 kcal (2) G-P(sol) polarization free energy of solvation -93.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds