Wall clock time and date at job start Wed Apr 1 2020 05:12:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 S 1.65600 * 120.00062 * 2 1 4 4 O 1.42098 * 104.27576 * 308.92781 * 3 2 1 5 5 O 1.42102 * 104.27841 * 181.06908 * 3 2 1 6 6 C 1.81404 * 104.45074 * 64.99734 * 3 2 1 7 7 C 1.53000 * 109.46946 * 180.02562 * 6 3 2 8 8 C 1.50706 * 109.46735 * 180.02562 * 7 6 3 9 9 O 1.21273 * 120.00140 * 359.97438 * 8 7 6 10 10 N 1.34779 * 119.99767 * 180.02562 * 8 7 6 11 11 C 1.46926 * 120.62912 * 359.97438 * 10 8 7 12 12 C 1.53194 * 108.77794 * 126.37212 * 11 10 8 13 13 C 1.53037 * 109.31156 * 54.62806 * 12 11 10 14 14 H 1.09007 * 109.46152 * 58.66127 * 13 12 11 15 15 C 1.52997 * 109.45854 * 178.62930 * 13 12 11 16 16 N 1.46502 * 109.47600 * 295.00290 * 15 13 12 17 17 C 1.36936 * 120.00439 * 180.02562 * 16 15 13 18 18 H 1.08005 * 119.99691 * 0.02562 * 17 16 15 19 19 C 1.38804 * 119.99983 * 180.02562 * 17 16 15 20 20 N 1.31621 * 120.00432 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 119.99984 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.47164 * 59.99702 * 21 19 17 23 23 H 1.48499 * 109.47195 * 179.97438 * 21 19 17 24 24 H 1.48495 * 109.47017 * 300.00067 * 21 19 17 25 25 C 1.53034 * 109.54078 * 298.63864 * 13 12 11 26 26 H 1.09006 * 109.49831 * 181.31682 * 25 13 12 27 27 C 1.52995 * 109.49894 * 301.38151 * 25 13 12 28 28 C 1.46924 * 120.62834 * 179.71756 * 10 8 7 29 29 H 1.09002 * 109.46792 * 59.99845 * 1 2 3 30 30 H 1.08992 * 109.47240 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47003 * 300.00381 * 1 2 3 32 32 H 0.96993 * 119.99757 * 179.97438 * 2 1 3 33 33 H 1.09002 * 109.47124 * 60.00022 * 6 3 2 34 34 H 1.09001 * 109.46975 * 300.00144 * 6 3 2 35 35 H 1.09001 * 109.47194 * 299.99756 * 7 6 3 36 36 H 1.08992 * 109.47399 * 59.99928 * 7 6 3 37 37 H 1.09005 * 109.58400 * 246.15866 * 11 10 8 38 38 H 1.08997 * 109.59312 * 6.43676 * 11 10 8 39 39 H 1.08996 * 109.49957 * 174.58787 * 12 11 10 40 40 H 1.09005 * 109.49246 * 294.64689 * 12 11 10 41 41 H 1.09003 * 109.47322 * 55.00406 * 15 13 12 42 42 H 1.09006 * 109.47355 * 175.00548 * 15 13 12 43 43 H 0.97004 * 119.99343 * 0.02562 * 16 15 13 44 44 H 0.97001 * 120.00250 * 180.02562 * 20 19 17 45 45 H 1.08999 * 109.47174 * 59.99981 * 27 25 13 46 46 H 1.09001 * 109.47139 * 179.97438 * 27 25 13 47 47 H 1.09001 * 109.47552 * 299.99775 * 27 25 13 48 48 H 1.08991 * 109.58859 * 353.41682 * 28 10 8 49 49 H 1.09000 * 109.58813 * 113.84693 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2930 1.4341 0.0000 4 8 1.7189 2.1702 -1.0713 5 8 3.6607 1.0492 -0.0257 6 6 1.8764 2.1974 1.5920 7 6 2.5890 3.5459 1.7131 8 6 2.2433 4.1797 3.0360 9 8 1.4999 3.6093 3.8058 10 7 2.7596 5.3810 3.3630 11 6 3.6612 6.0845 2.4405 12 6 3.1170 7.4962 2.1999 13 6 2.9204 8.1989 3.5451 14 1 3.8715 8.2390 4.0763 15 6 2.4093 9.6213 3.3071 16 7 3.4364 10.3991 2.6097 17 6 3.2024 11.7095 2.2882 18 1 2.2609 12.1697 2.5492 19 6 4.1754 12.4462 1.6270 20 7 5.3231 11.8855 1.3094 21 14 3.8560 14.2336 1.1878 22 1 3.5990 15.0097 2.4276 23 1 5.0430 14.7921 0.4918 24 1 2.6722 14.3201 0.2954 25 6 1.9006 7.4245 4.3830 26 1 1.7437 7.9384 5.3314 27 6 0.5754 7.3386 3.6234 28 6 2.4270 6.0143 4.6463 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.9500 -0.8400 0.0004 33 1 2.1957 1.5432 2.4033 34 1 0.7987 2.3497 1.6509 35 1 3.6667 3.3940 1.6540 36 1 2.2693 4.1999 0.9019 37 1 4.6570 6.1467 2.8794 38 1 3.7115 5.5440 1.4954 39 1 3.8257 8.0610 1.5944 40 1 2.1618 7.4338 1.6784 41 1 1.5053 9.5856 2.6992 42 1 2.1850 10.0917 4.2645 43 1 4.2822 9.9858 2.3757 44 1 6.0031 12.4005 0.8476 45 1 0.7325 6.8237 2.6756 46 1 -0.1505 6.7865 4.2204 47 1 0.1999 8.3440 3.4327 48 1 1.6613 5.4289 5.1552 49 1 3.3203 6.0708 5.2683 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184412599.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:40 Heat of formation + Delta-G solvation = -102.305529 kcal Electronic energy + Delta-G solvation = -29353.843933 eV Core-core repulsion = 25250.171709 eV Total energy + Delta-G solvation = -4103.672224 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.58522 -38.29040 -37.48680 -36.34482 -35.44632 -35.01829 -33.90876 -33.13352 -31.74935 -30.35639 -27.38699 -27.03105 -26.45432 -25.01189 -23.59797 -23.03733 -21.43507 -20.09487 -19.63722 -18.57134 -18.18302 -17.68525 -17.02582 -16.86342 -16.27927 -16.11507 -15.87388 -15.22394 -14.98660 -14.75610 -14.35562 -14.25683 -14.02769 -13.74487 -13.70681 -13.40759 -13.28972 -13.04223 -12.82181 -12.54996 -12.48156 -12.45597 -12.37093 -12.22681 -12.07137 -11.91790 -11.61991 -11.43305 -11.23679 -11.06973 -10.94227 -10.77755 -10.41131 -10.31030 -10.21658 -10.07874 -10.01890 -9.83832 -9.64902 -8.86717 -8.68163 -6.92004 -5.77632 -3.05720 -0.17901 2.27661 2.40907 2.82197 3.36393 3.43542 3.48127 3.48940 3.80829 3.96015 4.27279 4.37387 4.51213 4.57818 4.72072 4.87092 4.93119 4.94744 4.96229 5.04845 5.09635 5.20184 5.22171 5.27042 5.36865 5.43186 5.51743 5.59247 5.67346 5.74322 5.81151 5.83308 6.01486 6.05836 6.16249 6.25802 6.34054 6.42676 6.43645 6.43780 6.63203 6.78815 6.91600 7.25434 7.68919 7.96606 8.41837 9.52898 10.10927 10.45434 11.45252 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015842 B = 0.002225 C = 0.002069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.013085 B =12580.845107 C =13531.090462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -1.123 6.123 3 S 2.613 3.387 4 O -0.950 6.950 5 O -0.956 6.956 6 C -0.611 4.611 7 C -0.137 4.137 8 C 0.525 3.475 9 O -0.545 6.545 10 N -0.602 5.602 11 C 0.100 3.900 12 C -0.129 4.129 13 C -0.089 4.089 14 H 0.072 0.928 15 C 0.158 3.842 16 N -0.732 5.732 17 C -0.239 4.239 18 H 0.068 0.932 19 C -0.014 4.014 20 N -0.934 5.934 21 Si 0.907 3.093 22 H -0.287 1.287 23 H -0.291 1.291 24 H -0.286 1.286 25 C -0.099 4.099 26 H 0.082 0.918 27 C -0.145 4.145 28 C 0.117 3.883 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.061 0.939 32 H 0.418 0.582 33 H 0.141 0.859 34 H 0.139 0.861 35 H 0.110 0.890 36 H 0.111 0.889 37 H 0.075 0.925 38 H 0.082 0.918 39 H 0.090 0.910 40 H 0.069 0.931 41 H 0.021 0.979 42 H 0.017 0.983 43 H 0.383 0.617 44 H 0.255 0.745 45 H 0.054 0.946 46 H 0.047 0.953 47 H 0.062 0.938 48 H 0.090 0.910 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.392 -25.656 1.902 27.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.883 5.883 3 S 2.704 3.296 4 O -0.940 6.940 5 O -0.946 6.946 6 C -0.740 4.740 7 C -0.178 4.178 8 C 0.311 3.689 9 O -0.423 6.423 10 N -0.335 5.335 11 C -0.023 4.023 12 C -0.167 4.167 13 C -0.107 4.107 14 H 0.090 0.910 15 C 0.031 3.969 16 N -0.376 5.376 17 C -0.370 4.370 18 H 0.086 0.914 19 C -0.210 4.210 20 N -0.583 5.583 21 Si 0.738 3.262 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.213 1.213 25 C -0.119 4.119 26 H 0.101 0.899 27 C -0.202 4.202 28 C -0.005 4.005 29 H 0.088 0.912 30 H 0.101 0.899 31 H 0.079 0.921 32 H 0.252 0.748 33 H 0.159 0.841 34 H 0.157 0.843 35 H 0.128 0.872 36 H 0.130 0.870 37 H 0.094 0.906 38 H 0.101 0.899 39 H 0.109 0.891 40 H 0.088 0.912 41 H 0.039 0.961 42 H 0.035 0.965 43 H 0.217 0.783 44 H 0.065 0.935 45 H 0.073 0.927 46 H 0.066 0.934 47 H 0.081 0.919 48 H 0.108 0.892 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -8.435 -25.316 1.587 26.732 hybrid contribution 0.026 0.620 0.321 0.698 sum -8.409 -24.696 1.907 26.158 Atomic orbital electron populations 1.21539 0.78605 1.04384 1.02153 1.55374 1.16079 1.24592 1.92215 1.04985 0.73772 0.73986 0.76832 1.93627 1.78746 1.72202 1.49452 1.93624 1.32562 1.81190 1.87192 1.30403 1.11858 1.07632 1.24131 1.21412 1.02728 0.94770 0.98927 1.20090 0.80066 0.80951 0.87763 1.90668 1.36801 1.62626 1.52163 1.48105 1.47292 1.18525 1.19604 1.21981 0.93213 0.94065 0.93021 1.21990 1.02681 0.93657 0.98410 1.21304 0.98478 0.95675 0.95292 0.90964 1.20710 0.92499 0.88549 0.95150 1.42371 1.16236 1.09917 1.69100 1.19173 0.99832 0.87534 1.30456 0.91360 1.24721 0.96375 0.98320 1.01567 1.69636 1.06266 1.36177 1.46240 0.86275 0.76848 0.85032 0.78071 1.21334 1.21697 1.21298 1.21412 0.95925 0.94650 0.99881 0.89943 1.21868 0.96055 1.02079 1.00235 1.21625 1.00891 0.93607 0.84394 0.91179 0.89898 0.92059 0.74810 0.84115 0.84286 0.87181 0.87046 0.90639 0.89924 0.89144 0.91209 0.96079 0.96519 0.78303 0.93477 0.92654 0.93366 0.91865 0.89153 0.91427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.31 11.03 59.85 0.66 0.97 16 2 N -1.12 -5.92 6.08 -16.63 -0.10 -6.02 16 3 S 2.61 20.74 5.46 -107.50 -0.59 20.15 16 4 O -0.95 -10.86 17.73 -57.54 -1.02 -11.88 16 5 O -0.96 -10.50 18.08 -57.54 -1.04 -11.54 16 6 C -0.61 -4.33 5.31 37.16 0.20 -4.13 16 7 C -0.14 -1.18 4.05 -27.88 -0.11 -1.30 16 8 C 0.52 6.10 7.70 -10.98 -0.08 6.02 16 9 O -0.54 -7.76 15.39 5.56 0.09 -7.67 16 10 N -0.60 -6.84 2.42 -173.01 -0.42 -7.26 16 11 C 0.10 1.07 6.34 -3.71 -0.02 1.05 16 12 C -0.13 -1.77 4.90 -26.61 -0.13 -1.90 16 13 C -0.09 -1.30 1.96 -90.58 -0.18 -1.48 16 14 H 0.07 1.11 8.14 -51.92 -0.42 0.68 16 15 C 0.16 3.03 5.18 -4.04 -0.02 3.01 16 16 N -0.73 -17.84 5.32 -59.91 -0.32 -18.16 16 17 C -0.24 -6.58 9.99 -15.06 -0.15 -6.73 16 18 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 19 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 20 N -0.93 -27.76 13.06 55.49 0.72 -27.03 16 21 Si 0.91 22.27 29.55 -169.99 -5.02 17.25 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 25 C -0.10 -1.22 2.71 -90.71 -0.25 -1.47 16 26 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 27 C -0.15 -1.82 8.38 37.15 0.31 -1.50 16 28 C 0.12 1.35 5.79 -3.91 -0.02 1.32 16 29 H 0.07 0.32 8.04 -51.93 -0.42 -0.10 16 30 H 0.08 0.16 8.14 -51.93 -0.42 -0.27 16 31 H 0.06 0.17 7.73 -51.93 -0.40 -0.23 16 32 H 0.42 1.54 8.92 -34.47 -0.31 1.23 16 33 H 0.14 0.88 8.10 -51.92 -0.42 0.46 16 34 H 0.14 0.88 7.73 -51.92 -0.40 0.48 16 35 H 0.11 0.76 7.94 -51.93 -0.41 0.34 16 36 H 0.11 0.83 7.69 -51.93 -0.40 0.43 16 37 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.08 0.71 5.93 -51.93 -0.31 0.41 16 39 H 0.09 1.44 7.15 -51.93 -0.37 1.07 16 40 H 0.07 0.97 6.34 -51.93 -0.33 0.64 16 41 H 0.02 0.42 6.74 -51.93 -0.35 0.07 16 42 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.38 9.69 6.85 -40.82 -0.28 9.41 16 44 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 45 H 0.05 0.71 5.98 -51.93 -0.31 0.40 16 46 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.06 0.83 6.58 -51.93 -0.34 0.49 16 48 H 0.09 1.09 7.01 -51.93 -0.36 0.73 16 49 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 395.13 15.07 5.95 5.95 Total: -1.00 -37.19 395.13 -9.56 -46.75 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: -7.92 Total: 6.11 kcal Atomic # 6 Polarization: -6.75 SS G_CDS: 0.10 Total: -6.65 kcal Atomic # 7 Polarization: -58.35 SS G_CDS: -0.11 Total: -58.47 kcal Atomic # 8 Polarization: -29.12 SS G_CDS: -1.97 Total: -31.10 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Atomic # 16 Polarization: 20.74 SS G_CDS: -0.59 Total: 20.15 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -37.19 -9.56 -46.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184412599.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.556 kcal (2) G-P(sol) polarization free energy of solvation -37.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds