Wall clock time and date at job start Wed Apr 1 2020 05:12:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.49412 * 2 1 4 4 C 1.53196 * 109.49588 * 239.94079 * 2 1 3 5 5 N 1.46929 * 108.77486 * 185.40772 * 4 2 1 6 6 C 1.34775 * 120.63328 * 233.60825 * 5 4 2 7 7 O 1.21277 * 119.99906 * 0.02562 * 6 5 4 8 8 C 1.50696 * 119.99778 * 179.97438 * 6 5 4 9 9 C 1.53004 * 109.47015 * 180.02562 * 8 6 5 10 10 N 1.46496 * 109.47329 * 180.02562 * 9 8 6 11 11 S 1.65598 * 120.00108 * 165.00195 * 10 9 8 12 12 C 1.81391 * 104.45202 * 64.99664 * 11 10 9 13 13 O 1.42104 * 104.27625 * 181.07169 * 11 10 9 14 14 O 1.42097 * 104.27613 * 308.92642 * 11 10 9 15 15 C 1.46924 * 118.73409 * 53.61317 * 5 4 2 16 16 C 1.53191 * 108.77817 * 306.38734 * 15 5 4 17 17 C 1.53035 * 109.50087 * 120.10505 * 2 1 3 18 18 H 1.08999 * 109.46561 * 61.29476 * 17 2 1 19 19 C 1.53004 * 109.45754 * 301.33823 * 17 2 1 20 20 N 1.46499 * 109.47294 * 175.00451 * 19 17 2 21 21 C 1.36938 * 120.00288 * 180.02562 * 20 19 17 22 22 H 1.07999 * 119.99678 * 359.97438 * 21 20 19 23 23 C 1.38809 * 120.00149 * 179.97438 * 21 20 19 24 24 N 1.31624 * 119.99981 * 359.97438 * 23 21 20 25 25 Si 1.86794 * 120.00166 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47256 * 59.99792 * 25 23 21 27 27 H 1.48505 * 109.47470 * 179.97438 * 25 23 21 28 28 H 1.48497 * 109.47022 * 299.99941 * 25 23 21 29 29 H 1.09004 * 109.47145 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46977 * 300.05555 * 1 2 3 31 31 H 1.09000 * 109.47198 * 60.06163 * 1 2 3 32 32 H 1.08998 * 109.58804 * 305.20210 * 4 2 1 33 33 H 1.09003 * 109.58394 * 65.62787 * 4 2 1 34 34 H 1.08994 * 109.47394 * 300.00026 * 8 6 5 35 35 H 1.09001 * 109.46810 * 60.00456 * 8 6 5 36 36 H 1.09007 * 109.46944 * 300.00260 * 9 8 6 37 37 H 1.09003 * 109.46976 * 59.99932 * 9 8 6 38 38 H 0.97007 * 119.99828 * 344.99730 * 10 9 8 39 39 H 1.09007 * 109.47201 * 60.00161 * 12 11 10 40 40 H 1.09002 * 109.47629 * 180.02562 * 12 11 10 41 41 H 1.09002 * 109.47508 * 300.00211 * 12 11 10 42 42 H 1.08999 * 109.58511 * 186.60055 * 15 5 4 43 43 H 1.09005 * 109.70744 * 66.24599 * 15 5 4 44 44 H 1.09006 * 109.49784 * 294.68835 * 16 15 5 45 45 H 1.09001 * 109.50459 * 174.58802 * 16 15 5 46 46 H 1.09005 * 109.46981 * 294.99824 * 19 17 2 47 47 H 1.08993 * 109.47289 * 54.99703 * 19 17 2 48 48 H 0.97004 * 119.99457 * 359.97438 * 20 19 17 49 49 H 0.96997 * 119.99862 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0413 -0.7234 -1.2499 5 7 3.5046 -0.8286 -1.1700 6 6 4.2811 -0.3851 -2.1784 7 8 3.7731 0.1070 -3.1636 8 6 5.7805 -0.4996 -2.0812 9 6 6.4190 0.0736 -3.3480 10 7 7.8766 -0.0382 -3.2538 11 16 8.8109 0.1516 -4.6078 12 6 8.5563 1.8803 -5.0948 13 8 10.1404 -0.0460 -4.1467 14 8 8.2282 -0.7261 -5.5614 15 6 4.1053 -1.4266 0.0301 16 6 3.5709 -0.6955 1.2656 17 6 2.0408 -0.7236 1.2480 18 1 1.6968 -1.7578 1.2346 19 6 1.5037 -0.0242 2.4983 20 7 1.8932 -0.7845 3.6885 21 6 1.5218 -0.3475 4.9320 22 1 0.9420 0.5578 5.0353 23 6 1.8904 -1.0682 6.0597 24 7 2.5966 -2.1718 5.9336 25 14 1.3843 -0.4718 7.7560 26 1 -0.0971 -0.4108 7.8376 27 1 1.8980 -1.4115 8.7848 28 1 1.9493 0.8807 7.9941 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5147 0.8895 31 1 -0.3633 0.5129 -0.8905 32 1 1.6052 -1.7211 -1.2987 33 1 1.7637 -0.1571 -2.1390 34 1 6.1320 0.0582 -1.2132 35 1 6.0587 -1.5483 -1.9762 36 1 6.0675 -0.4839 -4.2162 37 1 6.1407 1.1223 -3.4525 38 1 8.2946 -0.2234 -2.3981 39 1 8.8753 2.5366 -4.2851 40 1 9.1408 2.0957 -5.9893 41 1 7.4995 2.0473 -5.3029 42 1 5.1896 -1.3245 -0.0145 43 1 3.8397 -2.4823 0.0869 44 1 3.9159 0.3385 1.2541 45 1 3.9335 -1.1905 2.1665 46 1 1.9185 0.9821 2.5582 47 1 0.4167 0.0335 2.4437 48 1 2.4136 -1.5978 3.5956 49 1 2.8545 -2.6752 6.7216 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184525442.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:23 Heat of formation + Delta-G solvation = -106.303757 kcal Electronic energy + Delta-G solvation = -28802.712986 eV Core-core repulsion = 24698.867386 eV Total energy + Delta-G solvation = -4103.845600 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.48093 -38.28195 -37.49565 -36.37367 -36.01834 -35.06500 -33.67619 -32.06517 -30.75763 -30.32923 -29.91775 -26.95911 -26.78031 -24.17086 -23.38728 -22.54450 -21.35645 -20.18022 -19.83010 -19.02045 -17.99843 -17.51978 -17.06488 -16.77284 -16.36688 -16.08692 -15.93836 -15.10039 -14.91835 -14.64211 -14.41883 -14.01014 -13.95995 -13.71640 -13.66263 -13.56749 -13.27513 -13.13301 -12.67022 -12.56307 -12.49915 -12.48935 -12.37464 -12.18322 -12.04347 -11.91354 -11.78820 -11.60939 -11.44092 -11.03359 -10.92805 -10.84079 -10.44850 -10.36339 -10.23568 -10.04832 -9.94345 -9.86198 -9.66731 -8.89409 -8.68124 -6.94371 -5.80425 -3.08414 -0.15829 2.23116 2.43709 2.88392 3.38535 3.41146 3.45923 3.46593 3.77427 4.16358 4.34125 4.34885 4.54622 4.55238 4.63632 4.75328 4.88529 4.93500 5.02432 5.05241 5.07952 5.20598 5.26196 5.40715 5.41790 5.47426 5.53859 5.61255 5.65087 5.74633 5.81412 5.86702 5.93131 6.02585 6.17986 6.23421 6.28019 6.39150 6.45181 6.50427 6.57969 6.79077 6.88610 7.26526 7.66344 7.97830 8.39134 9.50182 10.08234 10.42717 11.42464 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015868 B = 0.001972 C = 0.001815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.157469 B =14196.190939 C =15425.772725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.097 4.097 3 H 0.072 0.928 4 C 0.117 3.883 5 N -0.606 5.606 6 C 0.519 3.481 7 O -0.549 6.549 8 C -0.150 4.150 9 C 0.129 3.871 10 N -1.122 6.122 11 S 2.618 3.382 12 C -0.674 4.674 13 O -0.960 6.960 14 O -0.955 6.955 15 C 0.103 3.897 16 C -0.126 4.126 17 C -0.089 4.089 18 H 0.072 0.928 19 C 0.156 3.844 20 N -0.732 5.732 21 C -0.239 4.239 22 H 0.068 0.932 23 C -0.014 4.014 24 N -0.935 5.935 25 Si 0.907 3.093 26 H -0.286 1.286 27 H -0.291 1.291 28 H -0.286 1.286 29 H 0.056 0.944 30 H 0.068 0.932 31 H 0.051 0.949 32 H 0.067 0.933 33 H 0.090 0.910 34 H 0.104 0.896 35 H 0.104 0.896 36 H 0.090 0.910 37 H 0.073 0.927 38 H 0.419 0.581 39 H 0.130 0.870 40 H 0.128 0.872 41 H 0.129 0.871 42 H 0.083 0.917 43 H 0.073 0.927 44 H 0.064 0.936 45 H 0.090 0.910 46 H 0.016 0.984 47 H 0.024 0.976 48 H 0.383 0.617 49 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.885 5.776 -21.490 23.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.116 4.116 3 H 0.091 0.909 4 C -0.005 4.005 5 N -0.339 5.339 6 C 0.306 3.694 7 O -0.427 6.427 8 C -0.191 4.191 9 C 0.002 3.998 10 N -0.882 5.882 11 S 2.709 3.291 12 C -0.824 4.824 13 O -0.950 6.950 14 O -0.945 6.945 15 C -0.020 4.020 16 C -0.164 4.164 17 C -0.108 4.108 18 H 0.091 0.909 19 C 0.029 3.971 20 N -0.376 5.376 21 C -0.370 4.370 22 H 0.086 0.914 23 C -0.210 4.210 24 N -0.583 5.583 25 Si 0.738 3.262 26 H -0.213 1.213 27 H -0.217 1.217 28 H -0.213 1.213 29 H 0.075 0.925 30 H 0.087 0.913 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.108 0.892 34 H 0.122 0.878 35 H 0.122 0.878 36 H 0.108 0.892 37 H 0.091 0.909 38 H 0.253 0.747 39 H 0.148 0.852 40 H 0.147 0.853 41 H 0.148 0.852 42 H 0.101 0.899 43 H 0.091 0.909 44 H 0.082 0.918 45 H 0.108 0.892 46 H 0.034 0.966 47 H 0.042 0.958 48 H 0.217 0.783 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 8.990 5.505 -22.466 24.817 hybrid contribution -0.241 0.620 1.698 1.823 sum 8.749 6.125 -20.769 23.354 Atomic orbital electron populations 1.21834 0.94379 1.02228 1.02060 1.21455 0.96149 0.99866 0.94164 0.90950 1.21724 0.78627 1.00974 0.99206 1.48156 1.07202 1.60254 1.18245 1.20351 0.88909 0.77599 0.82531 1.90694 1.75628 1.45230 1.31146 1.21835 0.92708 1.04598 0.99939 1.21054 0.77788 1.01847 0.99074 1.55597 1.16309 1.89108 1.27189 1.04622 0.73331 0.77382 0.73760 1.30527 1.12262 1.26888 1.12701 1.93630 1.35973 1.85469 1.79967 1.93630 1.78168 1.60716 1.62022 1.21928 0.98014 0.97722 0.84292 1.21939 0.96169 1.01089 0.97226 1.21340 0.94680 1.00228 0.94563 0.90945 1.20753 0.96690 0.94027 0.85638 1.42367 1.65398 1.29001 1.00839 1.19175 1.27719 1.06237 0.83850 0.91357 1.24722 1.00937 0.97526 0.97820 1.69637 1.42731 1.17256 1.28712 0.86274 0.78066 0.77636 0.84237 1.21312 1.21697 1.21319 0.92486 0.91304 0.92997 0.91446 0.89167 0.87812 0.87754 0.89175 0.90850 0.74668 0.85167 0.85312 0.85183 0.89870 0.90884 0.91767 0.89182 0.96628 0.95815 0.78329 0.93482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 8.81 37.16 0.33 -1.35 16 2 C -0.10 -1.17 2.41 -90.50 -0.22 -1.39 16 3 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 4 C 0.12 1.32 5.72 -3.71 -0.02 1.30 16 5 N -0.61 -6.56 2.97 -172.77 -0.51 -7.07 16 6 C 0.52 5.65 7.70 -10.99 -0.08 5.56 16 7 O -0.55 -7.62 15.39 5.56 0.09 -7.54 16 8 C -0.15 -1.07 4.19 -27.88 -0.12 -1.19 16 9 C 0.13 0.90 5.42 -4.04 -0.02 0.88 16 10 N -1.12 -6.31 5.89 -10.61 -0.06 -6.38 16 11 S 2.62 17.60 6.10 -107.50 -0.66 16.95 16 12 C -0.67 -2.41 10.89 101.05 1.10 -1.31 16 13 O -0.96 -9.67 18.08 -57.54 -1.04 -10.71 16 14 O -0.96 -10.29 17.50 -57.54 -1.01 -11.30 16 15 C 0.10 1.03 6.34 -3.71 -0.02 1.00 16 16 C -0.13 -1.64 5.25 -26.61 -0.14 -1.78 16 17 C -0.09 -1.28 1.73 -90.58 -0.16 -1.44 16 18 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 19 C 0.16 2.93 5.41 -4.04 -0.02 2.91 16 20 N -0.73 -17.51 5.32 -59.91 -0.32 -17.83 16 21 C -0.24 -6.48 9.99 -15.06 -0.15 -6.63 16 22 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 23 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 24 N -0.93 -27.38 13.06 55.49 0.72 -26.66 16 25 Si 0.91 21.97 29.55 -169.99 -5.02 16.94 16 26 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 27 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 28 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.86 6.30 -51.93 -0.33 0.53 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.09 1.08 7.01 -51.93 -0.36 0.72 16 34 H 0.10 0.56 7.69 -51.93 -0.40 0.17 16 35 H 0.10 0.62 7.94 -51.93 -0.41 0.21 16 36 H 0.09 0.76 7.65 -51.92 -0.40 0.36 16 37 H 0.07 0.45 8.10 -51.93 -0.42 0.03 16 38 H 0.42 1.72 8.62 -34.47 -0.30 1.43 16 39 H 0.13 0.30 8.14 -51.92 -0.42 -0.12 16 40 H 0.13 0.32 8.14 -51.92 -0.42 -0.10 16 41 H 0.13 0.38 8.14 -51.92 -0.42 -0.04 16 42 H 0.08 0.63 5.93 -51.93 -0.31 0.32 16 43 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 44 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.09 1.38 7.15 -51.93 -0.37 1.00 16 46 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16 47 H 0.02 0.46 6.14 -51.93 -0.32 0.14 16 48 H 0.38 9.52 6.84 -40.82 -0.28 9.24 16 49 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 399.62 15.07 6.02 6.02 Total: -1.00 -36.98 399.62 -9.50 -46.48 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -8.09 Total: 5.01 kcal Atomic # 6 Polarization: -4.31 SS G_CDS: 0.38 Total: -3.93 kcal Atomic # 7 Polarization: -57.77 SS G_CDS: -0.17 Total: -57.94 kcal Atomic # 8 Polarization: -27.58 SS G_CDS: -1.96 Total: -29.54 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.94 kcal Atomic # 16 Polarization: 17.60 SS G_CDS: -0.66 Total: 16.95 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -36.98 -9.50 -46.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184525442.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.819 kcal (2) G-P(sol) polarization free energy of solvation -36.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds