Wall clock time and date at job start Wed Apr 1 2020 05:12:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.52476 * 2 1 4 4 C 1.53194 * 109.51251 * 239.92379 * 2 1 3 5 5 N 1.46931 * 108.76321 * 294.69856 * 4 2 1 6 6 C 1.34773 * 120.62852 * 126.36110 * 5 4 2 7 7 O 1.21281 * 120.00379 * 0.02562 * 6 5 4 8 8 C 1.50704 * 120.00130 * 180.02562 * 6 5 4 9 9 C 1.52992 * 109.47365 * 179.97438 * 8 6 5 10 10 N 1.46505 * 109.47273 * 179.97438 * 9 8 6 11 11 S 1.65596 * 119.99671 * 165.00043 * 10 9 8 12 12 C 1.81398 * 104.45167 * 65.00476 * 11 10 9 13 13 O 1.42108 * 104.27189 * 181.07216 * 11 10 9 14 14 O 1.42098 * 104.28020 * 308.92990 * 11 10 9 15 15 C 1.46924 * 118.73897 * 306.37969 * 5 4 2 16 16 C 1.53194 * 108.77390 * 53.61086 * 15 5 4 17 17 C 1.53040 * 109.31367 * 305.36176 * 16 15 5 18 18 H 1.08995 * 109.45933 * 301.36091 * 17 16 15 19 19 C 1.53001 * 109.45855 * 181.38794 * 17 16 15 20 20 N 1.46490 * 109.47264 * 64.97245 * 19 17 16 21 21 C 1.36935 * 120.00121 * 179.97438 * 20 19 17 22 22 H 1.07997 * 120.00139 * 0.02562 * 21 20 19 23 23 C 1.38816 * 120.00401 * 180.02562 * 21 20 19 24 24 N 1.31624 * 119.99569 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00172 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47055 * 180.02562 * 25 23 21 27 27 H 1.48505 * 109.46653 * 299.99639 * 25 23 21 28 28 H 1.48495 * 109.47483 * 60.00002 * 25 23 21 29 29 H 1.08998 * 109.47104 * 299.91573 * 1 2 3 30 30 H 1.08995 * 109.46976 * 59.91986 * 1 2 3 31 31 H 1.09003 * 109.47162 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.60048 * 174.91037 * 4 2 1 33 33 H 1.09001 * 109.70040 * 54.54802 * 4 2 1 34 34 H 1.09003 * 109.46896 * 300.00254 * 8 6 5 35 35 H 1.09001 * 109.46583 * 59.99730 * 8 6 5 36 36 H 1.09003 * 109.47520 * 300.00116 * 9 8 6 37 37 H 1.09008 * 109.47132 * 59.99739 * 9 8 6 38 38 H 0.96994 * 119.99603 * 345.00340 * 10 9 8 39 39 H 1.09000 * 109.47208 * 59.99516 * 12 11 10 40 40 H 1.08997 * 109.47125 * 179.97438 * 12 11 10 41 41 H 1.08999 * 109.47045 * 299.99457 * 12 11 10 42 42 H 1.08997 * 109.58682 * 293.82790 * 15 5 4 43 43 H 1.09000 * 109.70075 * 173.46616 * 15 5 4 44 44 H 1.09002 * 109.49391 * 185.41031 * 16 15 5 45 45 H 1.09002 * 109.52444 * 65.33588 * 16 15 5 46 46 H 1.09003 * 109.46836 * 304.96952 * 19 17 16 47 47 H 1.08999 * 109.47071 * 184.97991 * 19 17 16 48 48 H 0.97000 * 120.00577 * 0.02562 * 20 19 17 49 49 H 0.97001 * 119.99885 * 359.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0417 -0.7236 -1.2495 5 7 1.6516 -2.1380 -1.1696 6 6 0.9741 -2.7214 -2.1781 7 8 0.6811 -2.0784 -3.1638 8 6 0.5806 -4.1729 -2.0810 9 6 -0.1729 -4.5829 -3.3478 10 7 -0.5549 -5.9942 -3.2536 11 16 -1.6875 -6.6161 -4.2893 12 6 -0.9150 -6.5021 -5.9265 13 8 -1.8167 -7.9745 -3.8924 14 8 -2.7834 -5.7169 -4.1913 15 6 2.0138 -2.9039 0.0307 16 6 1.5027 -2.1556 1.2659 17 6 2.0408 -0.7231 1.2484 18 1 3.1305 -0.7446 1.2353 19 6 1.5607 0.0170 2.4985 20 7 2.1471 -0.6035 3.6888 21 6 1.8591 -0.1072 4.9321 22 1 1.1992 0.7415 5.0352 23 6 2.4152 -0.6948 6.0601 24 7 3.2199 -1.7288 5.9345 25 14 2.0216 -0.0181 7.7562 26 1 2.7359 -0.8156 8.7853 27 1 2.4587 1.3988 7.8374 28 1 0.5581 -0.0992 7.9942 29 1 -0.3633 0.5125 0.8907 30 1 -0.3633 0.5151 -0.8892 31 1 -0.3634 -1.0277 -0.0005 32 1 3.1279 -0.6463 -1.2978 33 1 1.6034 -0.2734 -2.1402 34 1 1.4759 -4.7858 -1.9758 35 1 -0.0627 -4.3176 -1.2131 36 1 -1.0682 -3.9700 -3.4525 37 1 0.4701 -4.4381 -4.2160 38 1 -0.1444 -6.5641 -2.5847 39 1 0.0068 -7.0837 -5.9346 40 1 -1.5987 -6.8949 -6.6791 41 1 -0.6887 -5.4595 -6.1497 42 1 3.0977 -3.0043 0.0869 43 1 1.5569 -3.8926 -0.0126 44 1 1.8476 -2.6629 2.1670 45 1 0.4130 -2.1352 1.2544 46 1 0.4737 -0.0380 2.5582 47 1 1.8690 1.0610 2.4435 48 1 2.7402 -1.3655 3.5964 49 1 3.4240 -2.0804 5.0538 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184525445.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:30 Heat of formation + Delta-G solvation = -132.819925 kcal Electronic energy + Delta-G solvation = -29109.178497 eV Core-core repulsion = 25004.183069 eV Total energy + Delta-G solvation = -4104.995427 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.53455 -39.44670 -38.17975 -37.05124 -36.88011 -36.54802 -34.99636 -33.31148 -31.85448 -31.28219 -30.26110 -28.34500 -27.79602 -25.51837 -24.53446 -24.21843 -22.93416 -21.00553 -20.40448 -19.66097 -19.12099 -18.67093 -18.21652 -17.33869 -17.19218 -16.82953 -16.70464 -16.65705 -16.11877 -15.78608 -15.62844 -15.48258 -15.33217 -14.78577 -14.60063 -14.34559 -14.18259 -13.99919 -13.95146 -13.67588 -13.57993 -13.29142 -13.21480 -13.09594 -12.84882 -12.77915 -12.67138 -12.62720 -12.55906 -12.34699 -12.10881 -11.95721 -11.90801 -11.76932 -11.44561 -11.41743 -11.13616 -10.90421 -10.78310 -10.42797 -9.62727 -9.07976 -8.38909 -5.32035 -0.67177 1.58599 1.60062 1.67767 1.68865 1.84474 2.08299 2.70998 2.89158 3.27381 3.39666 3.47147 3.63761 3.66515 3.76451 3.85142 4.02815 4.05486 4.11314 4.13881 4.20692 4.23596 4.35488 4.42063 4.51558 4.54840 4.60204 4.69573 4.73921 4.79536 4.81958 4.87752 4.92914 4.95697 5.02641 5.07651 5.10195 5.14078 5.18562 5.27825 5.47511 5.58566 5.59444 6.11691 6.40644 6.52181 7.11760 7.13388 8.02546 8.13002 9.13474 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016735 B = 0.002015 C = 0.001886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.721425 B =13889.699869 C =14842.526050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.091 4.091 3 H 0.086 0.914 4 C 0.120 3.880 5 N -0.604 5.604 6 C 0.516 3.484 7 O -0.579 6.579 8 C -0.147 4.147 9 C 0.128 3.872 10 N -1.115 6.115 11 S 2.623 3.377 12 C -0.653 4.653 13 O -0.998 6.998 14 O -1.006 7.006 15 C 0.111 3.889 16 C -0.124 4.124 17 C -0.079 4.079 18 H 0.068 0.932 19 C 0.163 3.837 20 N -0.752 5.752 21 C -0.335 4.335 22 H 0.060 0.940 23 C -0.102 4.102 24 N -0.973 5.973 25 Si 1.125 2.875 26 H -0.291 1.291 27 H -0.280 1.280 28 H -0.280 1.280 29 H 0.048 0.952 30 H 0.057 0.943 31 H 0.051 0.949 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.134 0.866 35 H 0.112 0.888 36 H 0.068 0.932 37 H 0.089 0.911 38 H 0.427 0.573 39 H 0.153 0.847 40 H 0.144 0.856 41 H 0.143 0.857 42 H 0.084 0.916 43 H 0.113 0.887 44 H 0.061 0.939 45 H 0.062 0.938 46 H 0.016 0.984 47 H 0.010 0.990 48 H 0.363 0.637 49 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.107 -8.697 -25.831 27.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.110 4.110 3 H 0.105 0.895 4 C -0.002 4.002 5 N -0.336 5.336 6 C 0.305 3.695 7 O -0.460 6.460 8 C -0.188 4.188 9 C 0.002 3.998 10 N -0.876 5.876 11 S 2.719 3.281 12 C -0.807 4.807 13 O -0.989 6.989 14 O -0.996 6.996 15 C -0.011 4.011 16 C -0.162 4.162 17 C -0.098 4.098 18 H 0.086 0.914 19 C 0.037 3.963 20 N -0.398 5.398 21 C -0.467 4.467 22 H 0.078 0.922 23 C -0.294 4.294 24 N -0.621 5.621 25 Si 0.950 3.050 26 H -0.217 1.217 27 H -0.206 1.206 28 H -0.206 1.206 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.097 0.903 33 H 0.105 0.895 34 H 0.152 0.848 35 H 0.130 0.870 36 H 0.086 0.914 37 H 0.107 0.893 38 H 0.263 0.737 39 H 0.171 0.829 40 H 0.162 0.838 41 H 0.161 0.839 42 H 0.102 0.898 43 H 0.131 0.869 44 H 0.079 0.921 45 H 0.081 0.919 46 H 0.034 0.966 47 H 0.028 0.972 48 H 0.196 0.804 49 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -4.095 -8.545 -24.592 26.355 hybrid contribution 0.524 0.204 -1.296 1.412 sum -3.571 -8.341 -25.888 27.432 Atomic orbital electron populations 1.21798 0.95068 1.01575 1.01260 1.21399 0.96352 0.99749 0.93524 0.89535 1.21611 1.00065 0.80573 0.97969 1.48148 1.55557 1.11564 1.18341 1.20910 0.76498 0.90190 0.81882 1.90686 1.56229 1.66587 1.32474 1.21900 1.04103 0.92214 1.00612 1.21019 1.00072 0.80128 0.98623 1.55306 1.62840 1.18123 1.51300 1.04177 0.73845 0.72149 0.77938 1.30331 1.15735 1.13529 1.21084 1.93578 1.86275 1.36746 1.82261 1.93573 1.52692 1.66473 1.86834 1.21906 1.01497 0.95478 0.82210 1.21875 1.01063 0.95295 0.98013 1.21196 0.99915 0.95336 0.93313 0.91360 1.20777 0.95275 0.94510 0.85719 1.42543 1.57396 1.37534 1.02277 1.20357 1.26251 1.13247 0.86849 0.92167 1.27121 0.98163 0.98025 1.06058 1.70996 1.39715 1.26711 1.24657 0.82651 0.75987 0.74954 0.71380 1.21723 1.20597 1.20590 0.93315 0.92420 0.93047 0.90265 0.89494 0.84801 0.86955 0.91363 0.89279 0.73692 0.82860 0.83754 0.83852 0.89815 0.86873 0.92059 0.91896 0.96576 0.97226 0.80398 0.94370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.43 8.38 71.98 0.60 -2.82 16 2 C -0.09 -2.11 2.72 -10.71 -0.03 -2.14 16 3 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 4 C 0.12 2.44 5.83 86.36 0.50 2.95 16 5 N -0.60 -11.28 2.41 -818.89 -1.97 -13.25 16 6 C 0.52 9.81 7.70 87.66 0.67 10.49 16 7 O -0.58 -14.90 15.39 -3.03 -0.05 -14.94 16 8 C -0.15 -1.66 4.19 29.85 0.13 -1.53 16 9 C 0.13 1.52 5.42 86.38 0.47 1.99 16 10 N -1.11 -10.50 5.89 -187.48 -1.10 -11.61 16 11 S 2.62 33.31 6.10 -56.49 -0.34 32.96 16 12 C -0.65 -2.46 10.89 113.37 1.23 -1.22 16 13 O -1.00 -19.80 18.08 -127.65 -2.31 -22.11 16 14 O -1.01 -22.59 17.50 -127.65 -2.23 -24.82 16 15 C 0.11 1.88 6.34 86.36 0.55 2.43 16 16 C -0.12 -3.15 4.90 30.67 0.15 -3.00 16 17 C -0.08 -2.23 1.96 -10.76 -0.02 -2.25 16 18 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 19 C 0.16 6.35 5.19 86.38 0.45 6.80 16 20 N -0.75 -37.00 5.31 -343.47 -1.83 -38.83 16 21 C -0.34 -18.85 9.99 84.03 0.84 -18.01 16 22 H 0.06 3.35 7.83 -2.91 -0.02 3.33 16 23 C -0.10 -5.87 5.50 84.86 0.47 -5.41 16 24 N -0.97 -59.57 13.70 21.65 0.30 -59.27 16 25 Si 1.13 51.63 29.92 68.60 2.05 53.68 16 26 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 27 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 28 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 29 H 0.05 1.31 6.58 -2.39 -0.02 1.29 16 30 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.05 1.29 5.97 -2.39 -0.01 1.28 16 32 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.09 1.91 7.00 -2.39 -0.02 1.89 16 34 H 0.13 0.67 7.94 -2.39 -0.02 0.66 16 35 H 0.11 1.15 7.70 -2.39 -0.02 1.13 16 36 H 0.07 1.14 7.65 -2.39 -0.02 1.12 16 37 H 0.09 0.77 8.10 -2.38 -0.02 0.75 16 38 H 0.43 2.54 8.62 -96.75 -0.83 1.70 16 39 H 0.15 -0.03 8.14 -2.39 -0.02 -0.05 16 40 H 0.14 0.22 8.14 -2.39 -0.02 0.21 16 41 H 0.14 0.29 8.14 -2.39 -0.02 0.27 16 42 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.11 1.28 5.94 -2.39 -0.01 1.26 16 44 H 0.06 1.85 7.15 -2.39 -0.02 1.84 16 45 H 0.06 1.68 6.33 -2.39 -0.02 1.67 16 46 H 0.02 0.66 6.74 -2.39 -0.02 0.64 16 47 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 48 H 0.36 18.07 5.68 -92.71 -0.53 17.54 16 49 H 0.25 14.81 6.77 -92.71 -0.63 14.18 16 Total: -1.00 -84.71 393.91 -1.72 -86.44 By element: Atomic # 1 Polarization: 23.75 SS G_CDS: -0.25 Total: 23.50 kcal Atomic # 6 Polarization: -17.75 SS G_CDS: 6.01 Total: -11.73 kcal Atomic # 7 Polarization: -118.36 SS G_CDS: -4.61 Total: -122.96 kcal Atomic # 8 Polarization: -57.29 SS G_CDS: -4.59 Total: -61.88 kcal Atomic # 14 Polarization: 51.63 SS G_CDS: 2.05 Total: 53.68 kcal Atomic # 16 Polarization: 33.31 SS G_CDS: -0.34 Total: 32.96 kcal Total: -84.71 -1.72 -86.44 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184525445.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.383 kcal (2) G-P(sol) polarization free energy of solvation -84.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds