Wall clock time and date at job start Wed Apr 1 2020 05:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 109.49658 * 2 1 4 4 C 1.52765 * 109.38590 * 120.07357 * 2 1 3 5 5 N 1.46924 * 109.00392 * 65.51912 * 4 2 1 6 6 C 1.34779 * 120.62834 * 233.58037 * 5 4 2 7 7 O 1.21273 * 120.00093 * 359.72280 * 6 5 4 8 8 C 1.50706 * 119.99767 * 179.71756 * 6 5 4 9 9 C 1.53000 * 109.46735 * 180.02562 * 8 6 5 10 10 C 1.52997 * 109.47060 * 180.02562 * 9 8 6 11 11 S 1.81396 * 109.47360 * 180.02562 * 10 9 8 12 12 N 1.65606 * 104.45103 * 179.97438 * 11 10 9 13 13 O 1.42094 * 110.54259 * 291.62586 * 11 10 9 14 14 O 1.42106 * 110.54167 * 68.37612 * 11 10 9 15 15 C 1.46926 * 118.74196 * 53.30571 * 5 4 2 16 16 C 1.53194 * 108.77794 * 306.64678 * 15 5 4 17 17 C 1.53034 * 109.49894 * 239.93425 * 2 1 3 18 18 H 1.09007 * 109.45976 * 181.35779 * 17 2 1 19 19 C 1.52997 * 109.45040 * 61.39582 * 17 2 1 20 20 N 1.46502 * 109.47600 * 174.93823 * 19 17 2 21 21 C 1.36936 * 120.00439 * 180.02562 * 20 19 17 22 22 H 1.08005 * 119.99691 * 0.02562 * 21 20 19 23 23 C 1.38804 * 119.99983 * 180.02562 * 21 20 19 24 24 N 1.31625 * 119.99933 * 179.97438 * 23 21 20 25 25 Si 1.86802 * 120.00393 * 359.97438 * 23 21 20 26 26 H 1.48494 * 109.47378 * 89.99670 * 25 23 21 27 27 H 1.48499 * 109.46967 * 210.00329 * 25 23 21 28 28 H 1.48504 * 109.46679 * 329.99918 * 25 23 21 29 29 H 1.08999 * 109.47174 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47139 * 300.06486 * 1 2 3 31 31 H 1.09001 * 109.47552 * 60.06350 * 1 2 3 32 32 H 1.08991 * 109.51239 * 305.63554 * 4 2 1 33 33 H 1.09000 * 109.42814 * 185.35160 * 4 2 1 34 34 H 1.09001 * 109.46797 * 60.00350 * 8 6 5 35 35 H 1.08992 * 109.47518 * 300.00347 * 8 6 5 36 36 H 1.09002 * 109.47398 * 300.00410 * 9 8 6 37 37 H 1.09001 * 109.47194 * 60.00591 * 9 8 6 38 38 H 1.09002 * 109.47153 * 300.00319 * 10 9 8 39 39 H 1.08998 * 109.47533 * 59.99948 * 10 9 8 40 40 H 0.97001 * 119.99875 * 0.02562 * 12 11 10 41 41 H 0.96999 * 119.99881 * 179.97438 * 12 11 10 42 42 H 1.09005 * 109.58400 * 66.43331 * 15 5 4 43 43 H 1.08997 * 109.59312 * 186.71142 * 15 5 4 44 44 H 1.08996 * 109.49957 * 174.58787 * 16 15 5 45 45 H 1.09005 * 109.49246 * 294.64689 * 16 15 5 46 46 H 1.09003 * 109.47322 * 294.93939 * 19 17 2 47 47 H 1.09006 * 109.47355 * 54.94081 * 19 17 2 48 48 H 0.97004 * 119.99343 * 0.02562 * 20 19 17 49 49 H 0.97001 * 120.00115 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0276 0.0000 4 6 2.0370 -0.7221 1.2470 5 7 1.6528 -2.1381 1.1694 6 6 0.9758 -2.7222 2.1779 7 8 0.6824 -2.0795 3.1636 8 6 0.5833 -4.1740 2.0806 9 6 -0.1699 -4.5846 3.3475 10 6 -0.5679 -6.0586 3.2490 11 16 -1.4615 -6.5453 4.7507 12 7 -1.8288 -8.1426 4.5136 13 8 -0.5882 -6.5486 5.8716 14 8 -2.7264 -5.9004 4.8093 15 6 2.0153 -2.9037 -0.0311 16 6 1.5037 -2.1556 -1.2662 17 6 2.0408 -0.7227 -1.2485 18 1 3.1306 -0.7435 -1.2357 19 6 1.5597 0.0173 -2.4982 20 7 2.1468 -0.6021 -3.6890 21 6 1.8581 -0.1056 -4.9320 22 1 1.1979 0.7430 -5.0346 23 6 2.4140 -0.6928 -6.0602 24 7 2.1361 -0.2159 -7.2551 25 14 3.5564 -2.1601 -5.8828 26 1 2.7621 -3.4140 -5.9259 27 1 4.5402 -2.1587 -6.9952 28 1 4.2752 -2.0738 -4.5862 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5148 0.8894 31 1 -0.3634 0.5128 -0.8905 32 1 1.5932 -0.2712 2.1345 33 1 3.1228 -0.6403 1.2971 34 1 1.4789 -4.7862 1.9753 35 1 -0.0600 -4.3191 1.2128 36 1 0.4731 -4.4394 4.2156 37 1 -1.0656 -3.9723 3.4522 38 1 -1.2107 -6.2042 2.3808 39 1 0.3279 -6.6707 3.1444 40 1 -1.5567 -8.5866 3.6952 41 1 -2.3154 -8.6345 5.1935 42 1 3.0993 -3.0035 -0.0873 43 1 1.5593 -3.8927 0.0146 44 1 1.8487 -2.6625 -2.1673 45 1 0.4139 -2.1364 -1.2542 46 1 0.4728 -0.0388 -2.5579 47 1 1.8672 1.0617 -2.4430 48 1 2.7401 -1.3640 -3.5967 49 1 2.5248 -0.6260 -8.0435 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185041682.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:17 Heat of formation + Delta-G solvation = -142.097035 kcal Electronic energy + Delta-G solvation = -29010.678774 eV Core-core repulsion = 24905.281061 eV Total energy + Delta-G solvation = -4105.397713 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.49939 -39.40511 -38.03990 -36.96293 -36.69530 -35.73128 -34.80481 -33.98345 -33.41951 -32.20194 -29.88282 -28.70663 -27.49008 -25.24094 -24.12565 -23.68395 -22.64021 -20.83747 -20.35390 -19.92587 -19.13245 -18.61241 -18.22456 -17.85362 -17.33418 -16.87645 -16.76216 -16.57772 -16.07783 -16.00917 -15.85451 -15.48638 -15.18996 -14.78659 -14.70227 -14.53303 -14.03201 -13.86147 -13.64745 -13.59239 -13.24002 -13.23603 -13.12871 -13.10440 -13.01807 -12.94858 -12.82117 -12.65386 -12.42139 -12.16482 -12.02163 -11.92176 -11.83782 -11.65135 -11.55871 -11.33501 -11.26633 -11.23054 -10.92296 -10.71485 -9.58792 -9.25990 -8.00317 -5.34174 -0.70191 1.39109 1.45154 1.52726 1.65269 1.97051 2.08722 2.51506 2.74758 3.30823 3.35832 3.45805 3.55871 3.73376 3.78604 3.87244 3.91066 3.97679 4.09759 4.13845 4.28288 4.39032 4.41816 4.50232 4.59419 4.65420 4.67690 4.76130 4.77879 4.84236 4.88376 4.92658 4.99760 5.06680 5.08217 5.17141 5.19978 5.23675 5.31933 5.32840 5.54494 5.64254 5.77794 6.23245 6.41432 6.45945 7.10857 7.19457 7.86307 8.07765 9.21473 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016428 B = 0.002082 C = 0.001945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.000660 B =13448.059167 C =14393.248048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.091 4.091 3 H 0.085 0.915 4 C 0.119 3.881 5 N -0.605 5.605 6 C 0.505 3.495 7 O -0.590 6.590 8 C -0.130 4.130 9 C -0.110 4.110 10 C -0.594 4.594 11 S 2.616 3.384 12 N -1.238 6.238 13 O -1.012 7.012 14 O -1.014 7.014 15 C 0.107 3.893 16 C -0.130 4.130 17 C -0.083 4.083 18 H 0.076 0.924 19 C 0.160 3.840 20 N -0.753 5.753 21 C -0.236 4.236 22 H 0.049 0.951 23 C -0.070 4.070 24 N -0.987 5.987 25 Si 0.961 3.039 26 H -0.271 1.271 27 H -0.300 1.300 28 H -0.245 1.245 29 H 0.055 0.945 30 H 0.050 0.950 31 H 0.050 0.950 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.133 0.867 35 H 0.126 0.874 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.173 0.827 39 H 0.177 0.823 40 H 0.429 0.571 41 H 0.423 0.577 42 H 0.085 0.915 43 H 0.119 0.881 44 H 0.073 0.927 45 H 0.068 0.932 46 H 0.023 0.977 47 H 0.014 0.986 48 H 0.368 0.632 49 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.092 -19.138 23.159 30.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.111 4.111 3 H 0.103 0.897 4 C -0.004 4.004 5 N -0.337 5.337 6 C 0.295 3.705 7 O -0.471 6.471 8 C -0.170 4.170 9 C -0.149 4.149 10 C -0.727 4.727 11 S 2.712 3.288 12 N -0.916 5.916 13 O -1.001 7.001 14 O -1.003 7.003 15 C -0.014 4.014 16 C -0.168 4.168 17 C -0.102 4.102 18 H 0.094 0.906 19 C 0.034 3.966 20 N -0.399 5.399 21 C -0.367 4.367 22 H 0.067 0.933 23 C -0.261 4.261 24 N -0.638 5.638 25 Si 0.787 3.213 26 H -0.197 1.197 27 H -0.228 1.228 28 H -0.170 1.170 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.151 0.849 35 H 0.144 0.856 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.191 0.809 39 H 0.195 0.805 40 H 0.259 0.741 41 H 0.253 0.747 42 H 0.103 0.897 43 H 0.137 0.863 44 H 0.091 0.909 45 H 0.086 0.914 46 H 0.041 0.959 47 H 0.032 0.968 48 H 0.202 0.798 49 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -2.555 -17.957 24.394 30.398 hybrid contribution 0.552 -0.504 -1.276 1.478 sum -2.003 -18.461 23.118 29.653 Atomic orbital electron populations 1.21817 0.95170 1.01754 1.01106 1.21314 0.96339 0.99780 0.93636 0.89656 1.21495 1.00048 0.80910 0.97937 1.48197 1.55615 1.11333 1.18571 1.21340 0.76479 0.90945 0.81757 1.90693 1.56500 1.66936 1.32929 1.21764 1.04104 0.91137 1.00019 1.21090 1.01882 0.92187 0.99768 1.30191 1.16786 1.05362 1.20387 1.04257 0.74316 0.73500 0.76718 1.52756 1.75646 1.30937 1.32279 1.93567 1.68973 1.86233 1.51373 1.93573 1.43352 1.76101 1.87321 1.22007 1.01706 0.95692 0.82033 1.21969 1.01588 0.95008 0.98282 1.21247 1.00456 0.95533 0.92927 0.90562 1.20833 0.95735 0.94803 0.85208 1.42662 1.57475 1.37780 1.02012 1.19011 1.22587 1.10830 0.84253 0.93338 1.25626 1.02815 1.03147 0.94514 1.69916 1.50324 1.45445 0.98123 0.85322 0.78646 0.79409 0.77887 1.19693 1.22757 1.16967 0.92619 0.93064 0.93111 0.90332 0.90327 0.84868 0.85579 0.90735 0.91168 0.80873 0.80502 0.74131 0.74654 0.89677 0.86278 0.90889 0.91358 0.95906 0.96787 0.79776 0.93403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.28 8.38 71.98 0.60 -2.67 16 2 C -0.09 -1.97 2.71 -10.86 -0.03 -2.00 16 3 H 0.09 1.83 8.14 -2.38 -0.02 1.81 16 4 C 0.12 2.35 5.79 86.22 0.50 2.85 16 5 N -0.60 -10.49 2.42 -819.74 -1.98 -12.47 16 6 C 0.50 9.62 7.70 87.66 0.67 10.29 16 7 O -0.59 -16.63 15.39 -3.01 -0.05 -16.68 16 8 C -0.13 -1.18 4.05 29.85 0.12 -1.06 16 9 C -0.11 -1.28 4.51 30.59 0.14 -1.14 16 10 C -0.59 -1.77 6.09 71.98 0.44 -1.33 16 11 S 2.62 30.34 5.97 -56.49 -0.34 30.01 16 12 N -1.24 -4.52 9.43 37.02 0.35 -4.18 16 13 O -1.01 -21.22 18.10 -127.65 -2.31 -23.54 16 14 O -1.01 -21.99 18.10 -127.65 -2.31 -24.30 16 15 C 0.11 1.40 6.34 86.36 0.55 1.95 16 16 C -0.13 -2.66 4.90 30.67 0.15 -2.51 16 17 C -0.08 -2.04 1.96 -10.77 -0.02 -2.06 16 18 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 19 C 0.16 5.67 5.18 86.38 0.45 6.11 16 20 N -0.75 -33.02 5.12 -343.44 -1.76 -34.78 16 21 C -0.24 -13.19 10.47 84.03 0.88 -12.31 16 22 H 0.05 3.04 8.06 -2.91 -0.02 3.01 16 23 C -0.07 -4.03 5.50 84.86 0.47 -3.57 16 24 N -0.99 -62.59 13.97 21.65 0.30 -62.29 16 25 Si 0.96 42.92 27.74 68.60 1.90 44.82 16 26 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 27 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 28 H -0.25 -9.54 6.52 99.48 0.65 -8.89 16 29 H 0.05 1.27 5.97 -2.39 -0.01 1.26 16 30 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.05 1.29 6.58 -2.39 -0.02 1.28 16 32 H 0.08 1.81 7.01 -2.39 -0.02 1.79 16 33 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.13 0.34 7.94 -2.39 -0.02 0.32 16 35 H 0.13 0.56 7.69 -2.39 -0.02 0.54 16 36 H 0.07 1.10 8.10 -2.39 -0.02 1.08 16 37 H 0.07 1.10 8.10 -2.39 -0.02 1.08 16 38 H 0.17 -0.56 8.14 -2.39 -0.02 -0.58 16 39 H 0.18 -0.75 8.14 -2.39 -0.02 -0.77 16 40 H 0.43 -1.66 8.83 -96.74 -0.85 -2.52 16 41 H 0.42 1.45 8.96 -96.74 -0.87 0.58 16 42 H 0.08 0.96 8.14 -2.38 -0.02 0.94 16 43 H 0.12 0.75 5.93 -2.39 -0.01 0.73 16 44 H 0.07 1.65 7.15 -2.39 -0.02 1.63 16 45 H 0.07 1.47 6.34 -2.38 -0.02 1.46 16 46 H 0.02 0.85 6.74 -2.39 -0.02 0.84 16 47 H 0.01 0.53 8.14 -2.38 -0.02 0.51 16 48 H 0.37 14.83 4.71 -92.71 -0.44 14.40 16 49 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 Total: -1.00 -92.74 392.14 -2.51 -95.25 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: -1.23 Total: 15.60 kcal Atomic # 6 Polarization: -12.37 SS G_CDS: 4.92 Total: -7.45 kcal Atomic # 7 Polarization: -110.63 SS G_CDS: -3.09 Total: -113.72 kcal Atomic # 8 Polarization: -59.84 SS G_CDS: -4.67 Total: -64.51 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 1.90 Total: 44.82 kcal Atomic # 16 Polarization: 30.34 SS G_CDS: -0.34 Total: 30.01 kcal Total: -92.74 -2.51 -95.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185041682.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.850 kcal (2) G-P(sol) polarization free energy of solvation -92.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds