Wall clock time and date at job start Wed Apr 1 2020 05:13:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.49944 * 2 1 4 4 C 1.53191 * 109.49582 * 120.06266 * 2 1 3 5 5 N 1.46931 * 108.77318 * 174.62170 * 4 2 1 6 6 C 1.34776 * 120.63258 * 126.37128 * 5 4 2 7 7 O 1.21282 * 120.00029 * 359.97438 * 6 5 4 8 8 C 1.50697 * 120.00299 * 179.97438 * 6 5 4 9 9 S 1.81398 * 109.47529 * 179.97438 * 8 6 5 10 10 O 1.42094 * 110.54549 * 68.36845 * 9 8 6 11 11 O 1.42105 * 110.53962 * 291.62561 * 9 8 6 12 12 N 1.65594 * 104.45171 * 180.02562 * 9 8 6 13 13 C 1.46499 * 120.00527 * 89.99717 * 12 9 8 14 14 C 1.46510 * 119.99562 * 269.99694 * 12 9 8 15 15 C 1.46920 * 118.73766 * 306.64129 * 5 4 2 16 16 C 1.52766 * 109.01019 * 53.31252 * 15 5 4 17 17 C 1.53041 * 109.52406 * 239.91848 * 2 1 3 18 18 H 1.08998 * 109.45957 * 298.68368 * 17 2 1 19 19 C 1.52995 * 109.46021 * 58.65985 * 17 2 1 20 20 N 1.46502 * 109.47028 * 184.99851 * 19 17 2 21 21 C 1.36932 * 119.99984 * 179.97438 * 20 19 17 22 22 H 1.08001 * 120.00197 * 0.02562 * 21 20 19 23 23 C 1.38813 * 119.99971 * 180.02562 * 21 20 19 24 24 N 1.31621 * 120.00044 * 359.97438 * 23 21 20 25 25 Si 1.86806 * 120.00103 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.47135 * 59.99581 * 25 23 21 27 27 H 1.48495 * 109.47020 * 179.97438 * 25 23 21 28 28 H 1.48501 * 109.46744 * 299.99746 * 25 23 21 29 29 H 1.09007 * 109.47496 * 299.93573 * 1 2 3 30 30 H 1.09003 * 109.47375 * 59.93822 * 1 2 3 31 31 H 1.08997 * 109.47168 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.59005 * 54.83213 * 4 2 1 33 33 H 1.09005 * 109.70676 * 294.47249 * 4 2 1 34 34 H 1.09001 * 109.47096 * 59.99540 * 8 6 5 35 35 H 1.09000 * 109.47067 * 300.00002 * 8 6 5 36 36 H 1.09002 * 109.47391 * 179.97438 * 13 12 9 37 37 H 1.09001 * 109.46813 * 60.00003 * 13 12 9 38 38 H 1.09004 * 109.47041 * 300.00130 * 13 12 9 39 39 H 1.08999 * 109.47096 * 269.99806 * 14 12 9 40 40 H 1.09001 * 109.46763 * 30.00200 * 14 12 9 41 41 H 1.09005 * 109.46576 * 150.00183 * 14 12 9 42 42 H 1.09005 * 109.59063 * 173.14672 * 15 5 4 43 43 H 1.09000 * 109.58991 * 293.57330 * 15 5 4 44 44 H 1.09003 * 109.56712 * 185.55720 * 16 15 5 45 45 H 1.08998 * 109.38575 * 65.51617 * 16 15 5 46 46 H 1.08994 * 109.47393 * 304.99955 * 19 17 2 47 47 H 1.09007 * 109.47187 * 65.00460 * 19 17 2 48 48 H 0.97003 * 119.99873 * 0.02562 * 20 19 17 49 49 H 0.97001 * 120.00188 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0412 -0.7234 1.2498 5 7 3.5046 -0.8280 1.1702 6 6 4.2807 -0.3840 2.1787 7 8 3.7723 0.1080 3.1638 8 6 5.7802 -0.4989 2.0824 9 16 6.5365 0.1816 3.5842 10 8 6.2478 -0.6424 4.7053 11 8 6.3505 1.5892 3.6425 12 7 8.1649 -0.0051 3.3479 13 6 8.9374 1.0568 2.6985 14 6 8.8330 -1.2324 3.7883 15 6 4.1061 -1.4203 -0.0322 16 6 3.5715 -0.6941 -1.2654 17 6 2.0414 -0.7230 -1.2481 18 1 1.6979 -1.7573 -1.2350 19 6 1.5046 -0.0233 -2.4984 20 7 1.8947 -0.7832 -3.6887 21 6 1.5236 -0.3459 -4.9321 22 1 0.9437 0.5593 -5.0354 23 6 1.8928 -1.0661 -6.0599 24 7 2.5999 -2.1691 -5.9340 25 14 1.3872 -0.4693 -7.7563 26 1 1.9518 0.8835 -7.9937 27 1 1.9024 -1.4079 -8.7851 28 1 -0.0943 -0.4087 -7.8384 29 1 -0.3634 0.5129 0.8906 30 1 -0.3634 0.5148 -0.8894 31 1 -0.3633 -1.0276 -0.0005 32 1 1.6056 -1.7214 1.2983 33 1 1.7631 -0.1597 2.1404 34 1 6.1322 0.0583 1.2142 35 1 6.0583 -1.5476 1.9782 36 1 9.9831 0.7565 2.6315 37 1 8.8596 1.9728 3.2843 38 1 8.5443 1.2316 1.6969 39 1 9.1808 -1.1087 4.8139 40 1 8.1314 -2.0652 3.7404 41 1 9.6839 -1.4361 3.1382 42 1 5.1901 -1.3142 0.0112 43 1 3.8423 -2.4763 -0.0905 44 1 3.9345 -1.1888 -2.1663 45 1 3.9161 0.3399 -1.2541 46 1 0.4175 0.0341 -2.4441 47 1 1.9192 0.9831 -2.5578 48 1 2.4152 -1.5964 -3.5958 49 1 2.8582 -2.6722 -6.7221 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185603558.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:01 Heat of formation + Delta-G solvation = -90.693537 kcal Electronic energy + Delta-G solvation = -29626.544207 eV Core-core repulsion = 25523.375517 eV Total energy + Delta-G solvation = -4103.168690 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.79 seconds Orbital eigenvalues (eV) -40.57758 -38.30152 -37.39947 -36.64292 -36.08580 -35.17852 -33.78333 -32.15313 -30.86724 -30.36108 -28.53962 -27.01101 -26.44952 -25.10938 -23.83342 -22.66665 -21.50053 -20.35392 -19.50315 -19.01199 -18.29410 -17.26810 -17.05237 -16.89059 -16.76359 -15.84519 -15.78352 -14.93752 -14.79687 -14.74991 -14.56775 -14.15316 -14.00397 -13.77833 -13.60906 -13.51800 -13.13078 -13.03845 -12.90797 -12.63658 -12.59949 -12.55569 -12.28772 -12.03305 -12.02198 -11.95463 -11.87897 -11.74233 -11.30868 -11.05176 -10.96368 -10.85425 -10.57779 -10.47984 -10.27789 -10.19351 -10.01787 -9.68822 -9.54440 -8.91961 -8.82407 -6.96102 -5.82026 -3.09989 -0.19838 2.13475 2.28240 2.66247 3.40338 3.45038 3.45724 3.53297 3.78002 3.85933 4.28410 4.42578 4.53849 4.62761 4.74899 4.84103 4.85710 4.87234 4.96712 4.99014 5.11229 5.19534 5.31884 5.33983 5.38645 5.40504 5.45925 5.52157 5.62432 5.69721 5.76638 5.81474 5.87523 5.99168 6.01166 6.11900 6.20291 6.23729 6.31740 6.42023 6.52141 6.76917 6.86037 7.03857 7.65265 7.66253 8.37496 9.48686 10.06328 10.40956 11.40906 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015885 B = 0.002396 C = 0.002187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.205266 B =11683.134448 C =12799.269063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.099 4.099 3 H 0.075 0.925 4 C 0.114 3.886 5 N -0.593 5.593 6 C 0.544 3.456 7 O -0.544 6.544 8 C -0.676 4.676 9 S 2.644 3.356 10 O -0.937 6.937 11 O -0.936 6.936 12 N -1.012 6.012 13 C 0.087 3.913 14 C 0.091 3.909 15 C 0.100 3.900 16 C -0.128 4.128 17 C -0.090 4.090 18 H 0.074 0.926 19 C 0.156 3.844 20 N -0.732 5.732 21 C -0.238 4.238 22 H 0.069 0.931 23 C -0.014 4.014 24 N -0.935 5.935 25 Si 0.907 3.093 26 H -0.286 1.286 27 H -0.291 1.291 28 H -0.286 1.286 29 H 0.053 0.947 30 H 0.069 0.931 31 H 0.057 0.943 32 H 0.073 0.927 33 H 0.094 0.906 34 H 0.161 0.839 35 H 0.159 0.841 36 H 0.082 0.918 37 H 0.070 0.930 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.084 0.916 43 H 0.077 0.923 44 H 0.093 0.907 45 H 0.065 0.935 46 H 0.025 0.975 47 H 0.017 0.983 48 H 0.383 0.617 49 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.088 0.692 18.416 22.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.118 4.118 3 H 0.093 0.907 4 C -0.008 4.008 5 N -0.324 5.324 6 C 0.330 3.670 7 O -0.423 6.423 8 C -0.803 4.803 9 S 2.732 3.268 10 O -0.927 6.927 11 O -0.926 6.926 12 N -0.852 5.852 13 C -0.058 4.058 14 C -0.055 4.055 15 C -0.022 4.022 16 C -0.166 4.166 17 C -0.109 4.109 18 H 0.092 0.908 19 C 0.029 3.971 20 N -0.376 5.376 21 C -0.370 4.370 22 H 0.087 0.913 23 C -0.210 4.210 24 N -0.584 5.584 25 Si 0.738 3.262 26 H -0.213 1.213 27 H -0.217 1.217 28 H -0.213 1.213 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.113 0.887 34 H 0.179 0.821 35 H 0.177 0.823 36 H 0.101 0.899 37 H 0.089 0.911 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.090 0.910 41 H 0.093 0.907 42 H 0.102 0.898 43 H 0.095 0.905 44 H 0.111 0.889 45 H 0.084 0.916 46 H 0.043 0.957 47 H 0.035 0.965 48 H 0.216 0.784 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 11.361 1.390 19.502 22.613 hybrid contribution 0.131 -0.454 -2.011 2.066 sum 11.492 0.935 17.491 20.949 Atomic orbital electron populations 1.21828 0.94087 1.02301 1.02238 1.21480 0.96408 1.00026 0.93915 0.90685 1.21865 0.77742 1.01490 0.99713 1.48024 1.07400 1.59350 1.17667 1.19098 0.86401 0.78167 0.83364 1.90832 1.74894 1.45609 1.30955 1.31174 1.04971 1.16342 1.27824 1.04368 0.72140 0.74808 0.75519 1.93585 1.83183 1.70820 1.45143 1.93586 1.84330 1.28906 1.85730 1.57606 1.26197 1.26233 1.75140 1.21602 0.97163 0.90026 0.97046 1.21572 0.98562 0.84709 1.00633 1.21931 0.98136 0.98029 0.84122 1.21893 0.96381 1.01270 0.97090 1.21354 0.94516 1.00339 0.94662 0.90802 1.20754 0.96775 0.94060 0.85529 1.42365 1.65408 1.29005 1.00844 1.19183 1.27697 1.06259 0.83824 0.91321 1.24718 1.00910 0.97519 0.97819 1.69636 1.42727 1.17341 1.28709 0.86272 0.78094 0.77651 0.84201 1.21303 1.21695 1.21280 0.92840 0.91176 0.92423 0.90886 0.88720 0.82145 0.82302 0.89941 0.91103 0.92079 0.91990 0.90969 0.90693 0.89813 0.90476 0.88900 0.91614 0.95685 0.96515 0.78351 0.93494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 8.82 37.15 0.33 -1.39 16 2 C -0.10 -1.25 2.41 -90.50 -0.22 -1.47 16 3 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 4 C 0.11 1.38 5.72 -3.71 -0.02 1.36 16 5 N -0.59 -7.12 2.98 -173.03 -0.52 -7.64 16 6 C 0.54 7.08 7.72 -10.99 -0.08 7.00 16 7 O -0.54 -9.03 15.28 5.56 0.08 -8.94 16 8 C -0.68 -5.87 5.01 36.00 0.18 -5.68 16 9 S 2.64 29.49 4.51 -107.50 -0.49 29.00 16 10 O -0.94 -13.32 17.09 -57.55 -0.98 -14.30 16 11 O -0.94 -13.63 17.10 -57.55 -0.98 -14.61 16 12 N -1.01 -7.44 3.52 -129.19 -0.45 -7.90 16 13 C 0.09 0.49 10.25 59.85 0.61 1.10 16 14 C 0.09 0.48 10.17 59.85 0.61 1.08 16 15 C 0.10 1.05 6.31 -3.93 -0.02 1.02 16 16 C -0.13 -1.71 5.23 -26.83 -0.14 -1.85 16 17 C -0.09 -1.31 1.74 -90.58 -0.16 -1.47 16 18 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 19 C 0.16 2.95 5.41 -4.04 -0.02 2.93 16 20 N -0.73 -17.54 5.32 -59.91 -0.32 -17.86 16 21 C -0.24 -6.48 9.99 -15.06 -0.15 -6.63 16 22 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 23 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 24 N -0.94 -27.32 13.06 55.49 0.72 -26.60 16 25 Si 0.91 21.96 29.55 -169.99 -5.02 16.93 16 26 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 27 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 28 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 29 H 0.05 0.55 8.14 -51.92 -0.42 0.13 16 30 H 0.07 0.89 6.31 -51.93 -0.33 0.56 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.09 1.21 7.00 -51.93 -0.36 0.85 16 34 H 0.16 0.96 7.68 -51.92 -0.40 0.56 16 35 H 0.16 0.84 7.95 -51.92 -0.41 0.42 16 36 H 0.08 0.27 7.79 -51.93 -0.40 -0.14 16 37 H 0.07 0.46 7.90 -51.93 -0.41 0.05 16 38 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 39 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.07 0.33 7.79 -51.93 -0.40 -0.07 16 41 H 0.07 0.21 7.92 -51.93 -0.41 -0.20 16 42 H 0.08 0.65 5.94 -51.93 -0.31 0.34 16 43 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.09 1.42 7.15 -51.93 -0.37 1.05 16 45 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 46 H 0.03 0.48 6.14 -51.93 -0.32 0.17 16 47 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 48 H 0.38 9.49 6.84 -40.82 -0.28 9.21 16 49 H 0.26 7.25 8.31 -40.82 -0.34 6.92 16 LS Contribution 397.98 15.07 6.00 6.00 Total: -1.00 -37.05 397.98 -9.33 -46.38 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -8.18 Total: 4.03 kcal Atomic # 6 Polarization: -5.31 SS G_CDS: 0.82 Total: -4.50 kcal Atomic # 7 Polarization: -59.43 SS G_CDS: -0.56 Total: -59.99 kcal Atomic # 8 Polarization: -35.97 SS G_CDS: -1.88 Total: -37.86 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.93 kcal Atomic # 16 Polarization: 29.49 SS G_CDS: -0.49 Total: 29.00 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -37.05 -9.33 -46.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185603558.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.314 kcal (2) G-P(sol) polarization free energy of solvation -37.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds