Wall clock time and date at job start Wed Apr 1 2020 05:13:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.52476 * 2 1 4 4 C 1.53194 * 109.51251 * 239.92379 * 2 1 3 5 5 N 1.46931 * 108.76321 * 294.69856 * 4 2 1 6 6 C 1.34773 * 120.62671 * 126.40440 * 5 4 2 7 7 O 1.21281 * 120.00560 * 359.97438 * 6 5 4 8 8 C 1.50698 * 119.99684 * 179.97438 * 6 5 4 9 9 S 1.81401 * 109.47365 * 179.97438 * 8 6 5 10 10 O 1.42103 * 110.54078 * 291.62592 * 9 8 6 11 11 O 1.42101 * 110.54063 * 68.37119 * 9 8 6 12 12 N 1.65599 * 104.45490 * 179.97438 * 9 8 6 13 13 C 1.46499 * 119.99798 * 89.99527 * 12 9 8 14 14 C 1.46494 * 119.99983 * 270.00334 * 12 9 8 15 15 C 1.46924 * 118.73897 * 306.37969 * 5 4 2 16 16 C 1.53194 * 108.77390 * 53.61086 * 15 5 4 17 17 C 1.53040 * 109.31367 * 305.36176 * 16 15 5 18 18 H 1.08995 * 109.45933 * 301.36091 * 17 16 15 19 19 C 1.53001 * 109.45855 * 181.38794 * 17 16 15 20 20 N 1.46490 * 109.47264 * 64.97245 * 19 17 16 21 21 C 1.36935 * 120.00121 * 179.97438 * 20 19 17 22 22 H 1.07997 * 120.00139 * 0.02562 * 21 20 19 23 23 C 1.38816 * 120.00401 * 180.02562 * 21 20 19 24 24 N 1.31624 * 119.99569 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00172 * 180.02562 * 23 21 20 26 26 H 1.48508 * 109.46685 * 269.99637 * 25 23 21 27 27 H 1.48494 * 109.47357 * 29.99716 * 25 23 21 28 28 H 1.48502 * 109.47120 * 150.00435 * 25 23 21 29 29 H 1.08998 * 109.47104 * 299.91573 * 1 2 3 30 30 H 1.08995 * 109.46976 * 59.91986 * 1 2 3 31 31 H 1.09003 * 109.47162 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.60048 * 174.91037 * 4 2 1 33 33 H 1.09001 * 109.70040 * 54.54802 * 4 2 1 34 34 H 1.09000 * 109.47382 * 299.99927 * 8 6 5 35 35 H 1.08999 * 109.47491 * 59.99782 * 8 6 5 36 36 H 1.08999 * 109.46590 * 90.01058 * 13 12 9 37 37 H 1.09006 * 109.46994 * 210.00164 * 13 12 9 38 38 H 1.08996 * 109.47534 * 330.00330 * 13 12 9 39 39 H 1.09002 * 109.47293 * 89.99173 * 14 12 9 40 40 H 1.08998 * 109.47763 * 209.99685 * 14 12 9 41 41 H 1.09004 * 109.47342 * 329.99734 * 14 12 9 42 42 H 1.08997 * 109.58682 * 293.82790 * 15 5 4 43 43 H 1.09000 * 109.70075 * 173.46616 * 15 5 4 44 44 H 1.09002 * 109.49391 * 185.41031 * 16 15 5 45 45 H 1.08995 * 109.50041 * 65.31952 * 16 15 5 46 46 H 1.09003 * 109.46836 * 304.96952 * 19 17 16 47 47 H 1.08999 * 109.47071 * 184.97991 * 19 17 16 48 48 H 0.97000 * 120.00577 * 0.02562 * 20 19 17 49 49 H 0.97001 * 119.99885 * 359.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0417 -0.7236 -1.2495 5 7 1.6516 -2.1380 -1.1696 6 6 0.9749 -2.7216 -2.1785 7 8 0.6818 -2.0786 -3.1641 8 6 0.5824 -4.1734 -2.0818 9 16 -0.3102 -4.6598 -3.5843 10 8 -1.5748 -4.0145 -3.6439 11 8 0.5641 -4.6633 -4.7045 12 7 -0.6769 -6.2574 -3.3482 13 6 -1.9360 -6.6317 -2.6996 14 6 0.2578 -7.2962 -3.7878 15 6 2.0138 -2.9039 0.0307 16 6 1.5027 -2.1556 1.2659 17 6 2.0408 -0.7231 1.2484 18 1 3.1305 -0.7446 1.2353 19 6 1.5607 0.0170 2.4985 20 7 2.1471 -0.6035 3.6888 21 6 1.8591 -0.1072 4.9321 22 1 1.1992 0.7415 5.0352 23 6 2.4152 -0.6948 6.0601 24 7 3.2199 -1.7288 5.9345 25 14 2.0216 -0.0181 7.7562 26 1 3.0148 1.0261 8.1151 27 1 0.6604 0.5751 7.7488 28 1 2.0772 -1.1175 8.7529 29 1 -0.3633 0.5125 0.8907 30 1 -0.3633 0.5151 -0.8892 31 1 -0.3634 -1.0277 -0.0005 32 1 3.1279 -0.6463 -1.2978 33 1 1.6034 -0.2734 -2.1402 34 1 1.4780 -4.7857 -1.9766 35 1 -0.0611 -4.3189 -1.2142 36 1 -2.7118 -6.7537 -3.4555 37 1 -1.8025 -7.5702 -2.1613 38 1 -2.2306 -5.8500 -1.9994 39 1 0.9532 -7.5247 -2.9802 40 1 -0.2975 -8.1954 -4.0545 41 1 0.8133 -6.9414 -4.6560 42 1 3.0977 -3.0043 0.0869 43 1 1.5569 -3.8926 -0.0126 44 1 1.8476 -2.6629 2.1670 45 1 0.4130 -2.1352 1.2539 46 1 0.4737 -0.0380 2.5582 47 1 1.8690 1.0610 2.4435 48 1 2.7402 -1.3655 3.5964 49 1 3.4240 -2.0804 5.0538 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185603560.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:09 Heat of formation + Delta-G solvation = -87.550822 kcal Electronic energy + Delta-G solvation = -29929.531290 eV Core-core repulsion = 25826.498879 eV Total energy + Delta-G solvation = -4103.032412 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -40.73492 -38.44182 -37.44600 -36.67151 -36.11474 -35.30943 -33.83095 -32.13006 -30.71276 -30.29621 -28.56256 -27.06470 -26.47046 -25.11463 -23.60507 -23.23990 -21.87246 -20.52638 -19.18519 -18.60783 -18.29349 -17.38670 -17.10222 -17.06226 -16.79606 -15.96900 -15.67942 -15.10610 -15.00201 -14.81804 -14.66268 -14.32043 -14.05766 -13.90189 -13.68384 -13.41435 -13.19928 -13.06106 -13.04410 -12.89176 -12.75090 -12.58451 -12.40753 -12.32948 -11.98936 -11.91397 -11.73858 -11.66251 -11.30174 -11.10111 -10.80681 -10.74185 -10.60573 -10.48742 -10.26075 -10.14895 -10.03110 -9.57467 -9.23259 -8.91787 -8.87410 -7.04470 -6.15722 -3.15051 -0.23153 2.10046 2.24655 2.62225 3.48343 3.49458 3.52732 3.66639 3.75033 3.81754 4.29415 4.39453 4.56016 4.60324 4.70298 4.76967 4.84892 4.85444 4.90958 4.92039 5.07410 5.11245 5.24147 5.33441 5.34810 5.37845 5.44939 5.54612 5.59061 5.63874 5.65766 5.67987 5.83986 5.88607 5.98810 6.02295 6.11877 6.22422 6.24878 6.27145 6.45734 6.65366 6.78188 6.98961 7.62579 7.77073 8.70718 9.18073 10.04292 10.19219 11.32944 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017543 B = 0.002401 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.693725 B =11657.979941 C =12465.842774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.099 4.099 3 H 0.086 0.914 4 C 0.113 3.887 5 N -0.590 5.590 6 C 0.544 3.456 7 O -0.542 6.542 8 C -0.676 4.676 9 S 2.644 3.356 10 O -0.935 6.935 11 O -0.938 6.938 12 N -1.011 6.011 13 C 0.090 3.910 14 C 0.079 3.921 15 C 0.100 3.900 16 C -0.129 4.129 17 C -0.091 4.091 18 H 0.071 0.929 19 C 0.164 3.836 20 N -0.743 5.743 21 C -0.330 4.330 22 H 0.064 0.936 23 C -0.046 4.046 24 N -0.945 5.945 25 Si 1.082 2.918 26 H -0.295 1.295 27 H -0.295 1.295 28 H -0.288 1.288 29 H 0.064 0.936 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.072 0.928 33 H 0.096 0.904 34 H 0.159 0.841 35 H 0.160 0.840 36 H 0.062 0.938 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.056 0.944 40 H 0.078 0.922 41 H 0.086 0.914 42 H 0.076 0.924 43 H 0.084 0.916 44 H 0.086 0.914 45 H 0.071 0.929 46 H 0.023 0.977 47 H 0.019 0.981 48 H 0.366 0.634 49 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.635 -11.149 -18.672 22.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.118 4.118 3 H 0.104 0.896 4 C -0.009 4.009 5 N -0.322 5.322 6 C 0.330 3.670 7 O -0.421 6.421 8 C -0.803 4.803 9 S 2.731 3.269 10 O -0.925 6.925 11 O -0.928 6.928 12 N -0.851 5.851 13 C -0.055 4.055 14 C -0.067 4.067 15 C -0.022 4.022 16 C -0.167 4.167 17 C -0.110 4.110 18 H 0.090 0.910 19 C 0.037 3.963 20 N -0.389 5.389 21 C -0.461 4.461 22 H 0.082 0.918 23 C -0.243 4.243 24 N -0.591 5.591 25 Si 0.913 3.087 26 H -0.223 1.223 27 H -0.222 1.222 28 H -0.214 1.214 29 H 0.083 0.917 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.091 0.909 33 H 0.114 0.886 34 H 0.177 0.823 35 H 0.178 0.822 36 H 0.081 0.919 37 H 0.093 0.907 38 H 0.091 0.909 39 H 0.075 0.925 40 H 0.097 0.903 41 H 0.104 0.896 42 H 0.095 0.905 43 H 0.102 0.898 44 H 0.105 0.895 45 H 0.089 0.911 46 H 0.041 0.959 47 H 0.037 0.963 48 H 0.199 0.801 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -5.871 -10.307 -18.234 21.753 hybrid contribution 0.270 -0.314 -0.640 0.762 sum -5.602 -10.621 -18.875 22.370 Atomic orbital electron populations 1.21888 0.94705 1.01996 1.01887 1.21484 0.96836 0.99668 0.93829 0.89607 1.21841 0.99884 0.79386 0.99746 1.47961 1.54541 1.12043 1.17661 1.19086 0.78163 0.86397 0.83361 1.90834 1.55651 1.64793 1.30856 1.31188 1.17266 1.04095 1.27798 1.04359 0.74878 0.72158 0.75506 1.93596 1.39387 1.73844 1.85668 1.93570 1.68755 1.85169 1.45334 1.57548 1.28116 1.24277 1.75121 1.21544 0.84342 1.01988 0.97640 1.21669 0.92720 0.91718 1.00552 1.21990 1.00997 0.95037 0.84188 1.21992 1.01671 0.96195 0.96857 1.21342 1.00250 0.94559 0.94819 0.91016 1.20645 0.95973 0.94650 0.85073 1.42388 1.57275 1.37455 1.01810 1.20063 1.27125 1.13690 0.85191 0.91813 1.25762 0.98200 0.97961 1.02398 1.70872 1.37983 1.25275 1.24993 0.83200 0.75092 0.75210 0.75196 1.22313 1.22173 1.21383 0.91744 0.92909 0.92731 0.90927 0.88571 0.82276 0.82236 0.91923 0.90679 0.90864 0.92538 0.90312 0.89562 0.90538 0.89770 0.89549 0.91051 0.95899 0.96312 0.80102 0.93523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 8.38 37.16 0.31 -1.59 16 2 C -0.10 -1.23 2.72 -90.50 -0.25 -1.47 16 3 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 4 C 0.11 1.33 5.83 -3.71 -0.02 1.31 16 5 N -0.59 -6.87 2.41 -172.77 -0.42 -7.28 16 6 C 0.54 6.92 7.72 -10.99 -0.08 6.84 16 7 O -0.54 -8.83 15.28 5.56 0.08 -8.74 16 8 C -0.68 -5.76 5.01 36.00 0.18 -5.58 16 9 S 2.64 29.06 4.51 -107.50 -0.49 28.58 16 10 O -0.94 -13.45 17.09 -57.55 -0.98 -14.44 16 11 O -0.94 -13.13 16.57 -57.55 -0.95 -14.09 16 12 N -1.01 -7.37 3.52 -129.21 -0.45 -7.82 16 13 C 0.09 0.50 10.20 59.85 0.61 1.11 16 14 C 0.08 0.41 10.64 59.84 0.64 1.05 16 15 C 0.10 1.02 6.34 -3.71 -0.02 1.00 16 16 C -0.13 -1.69 4.90 -26.61 -0.13 -1.82 16 17 C -0.09 -1.31 1.96 -90.57 -0.18 -1.49 16 18 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 19 C 0.16 3.13 5.19 -4.05 -0.02 3.11 16 20 N -0.74 -17.90 5.31 -59.91 -0.32 -18.22 16 21 C -0.33 -9.13 9.99 -15.06 -0.15 -9.28 16 22 H 0.06 1.76 7.83 -52.49 -0.41 1.35 16 23 C -0.05 -1.31 5.50 -17.43 -0.10 -1.41 16 24 N -0.95 -28.45 13.70 55.49 0.76 -27.69 16 25 Si 1.08 25.57 29.92 -169.99 -5.09 20.49 16 26 H -0.30 -6.81 7.11 56.52 0.40 -6.41 16 27 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 28 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 29 H 0.06 0.86 6.58 -51.93 -0.34 0.52 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.72 5.97 -51.93 -0.31 0.41 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.10 1.20 7.00 -51.93 -0.36 0.84 16 34 H 0.16 0.83 7.94 -51.92 -0.41 0.41 16 35 H 0.16 0.93 7.69 -51.92 -0.40 0.53 16 36 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.07 0.24 8.07 -51.93 -0.42 -0.18 16 38 H 0.07 0.38 7.79 -51.93 -0.40 -0.03 16 39 H 0.06 0.18 8.14 -51.93 -0.42 -0.24 16 40 H 0.08 0.28 8.07 -51.93 -0.42 -0.14 16 41 H 0.09 0.54 6.91 -51.93 -0.36 0.18 16 42 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.08 0.64 5.95 -51.93 -0.31 0.33 16 44 H 0.09 1.29 7.15 -51.93 -0.37 0.92 16 45 H 0.07 0.96 6.33 -51.93 -0.33 0.63 16 46 H 0.02 0.46 6.74 -51.93 -0.35 0.11 16 47 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 48 H 0.37 8.84 5.68 -40.82 -0.23 8.61 16 49 H 0.25 7.43 6.77 -40.82 -0.28 7.16 16 LS Contribution 391.62 15.07 5.90 5.90 Total: -1.00 -38.16 391.62 -9.05 -47.20 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -7.88 Total: 4.33 kcal Atomic # 6 Polarization: -9.01 SS G_CDS: 0.79 Total: -8.22 kcal Atomic # 7 Polarization: -60.59 SS G_CDS: -0.43 Total: -61.02 kcal Atomic # 8 Polarization: -35.41 SS G_CDS: -1.85 Total: -37.26 kcal Atomic # 14 Polarization: 25.57 SS G_CDS: -5.09 Total: 20.49 kcal Atomic # 16 Polarization: 29.06 SS G_CDS: -0.49 Total: 28.58 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -38.16 -9.05 -47.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185603560.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.346 kcal (2) G-P(sol) polarization free energy of solvation -38.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds