Wall clock time and date at job start Wed Apr 1 2020 05:16:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46521 * 2 1 4 4 C 1.52999 * 109.47017 * 119.99361 * 2 1 3 5 5 H 1.09006 * 109.46754 * 178.34413 * 4 2 1 6 6 N 1.46494 * 109.47088 * 58.34715 * 4 2 1 7 7 S 1.65604 * 120.00157 * 94.99969 * 6 4 2 8 8 C 1.81400 * 104.45016 * 64.99854 * 7 6 4 9 9 O 1.42102 * 104.27816 * 181.07254 * 7 6 4 10 10 O 1.42098 * 104.27407 * 308.92565 * 7 6 4 11 11 C 1.50700 * 109.47376 * 298.34439 * 4 2 1 12 12 O 1.21278 * 119.99984 * 87.83849 * 11 4 2 13 13 N 1.34773 * 120.00051 * 267.83734 * 11 4 2 14 14 C 1.47029 * 125.65208 * 174.75177 * 13 11 4 15 15 C 1.54316 * 107.27358 * 178.96077 * 14 13 11 16 16 H 1.09002 * 110.87476 * 96.24374 * 15 14 13 17 17 C 1.52997 * 110.71710 * 219.43928 * 15 14 13 18 18 C 1.55154 * 102.94493 * 337.80383 * 15 14 13 19 19 H 1.09000 * 111.00501 * 277.39196 * 18 15 14 20 20 N 1.46494 * 111.00685 * 153.57773 * 18 15 14 21 21 C 1.36943 * 120.00213 * 154.99757 * 20 18 15 22 22 H 1.08004 * 119.99463 * 0.02562 * 21 20 18 23 23 C 1.38807 * 119.99877 * 180.02562 * 21 20 18 24 24 N 1.31619 * 119.99737 * 180.02562 * 23 21 20 25 25 Si 1.86796 * 120.00235 * 0.27488 * 23 21 20 26 26 H 1.48496 * 109.47429 * 269.72423 * 25 23 21 27 27 H 1.48497 * 109.46893 * 29.72810 * 25 23 21 28 28 H 1.48502 * 109.46910 * 149.72699 * 25 23 21 29 29 C 1.47429 * 125.65191 * 354.76768 * 13 11 4 30 30 H 1.09002 * 109.47495 * 300.00153 * 1 2 3 31 31 H 1.09000 * 109.47281 * 60.00568 * 1 2 3 32 32 H 1.09009 * 109.46761 * 180.02562 * 1 2 3 33 33 H 1.08988 * 109.47233 * 239.99798 * 2 1 3 34 34 H 1.09005 * 109.47074 * 299.39598 * 3 2 1 35 35 H 1.08994 * 109.47583 * 59.39337 * 3 2 1 36 36 H 1.09007 * 109.47097 * 179.39869 * 3 2 1 37 37 H 0.96998 * 120.00185 * 274.99452 * 6 4 2 38 38 H 1.08996 * 109.46950 * 60.00156 * 8 7 6 39 39 H 1.08997 * 109.46813 * 180.02562 * 8 7 6 40 40 H 1.09005 * 109.46732 * 299.99956 * 8 7 6 41 41 H 1.08995 * 109.87983 * 59.53615 * 14 13 11 42 42 H 1.09005 * 110.00621 * 298.44865 * 14 13 11 43 43 H 1.09001 * 109.47200 * 173.52145 * 17 15 14 44 44 H 1.08999 * 109.47664 * 293.51854 * 17 15 14 45 45 H 1.09000 * 109.47190 * 53.52187 * 17 15 14 46 46 H 0.96999 * 119.99790 * 335.00305 * 20 18 15 47 47 H 0.96999 * 120.00433 * 180.02562 * 24 23 21 48 48 H 1.09009 * 110.36134 * 85.26967 * 29 13 11 49 49 H 1.09005 * 110.36604 * 322.95375 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 1 3.1296 -0.7469 1.2346 6 7 1.5194 -2.0903 1.2695 7 16 2.4317 -3.3321 0.6627 8 6 3.8704 -3.4171 1.7643 9 8 1.6113 -4.4811 0.8243 10 8 2.8184 -2.8839 -0.6291 11 6 1.5715 0.0127 2.4794 12 8 0.4937 -0.2509 2.9690 13 7 2.3502 0.9619 3.0354 14 6 1.9742 1.8263 4.1637 15 6 3.1847 2.7332 4.4694 16 1 3.0779 3.7014 3.9802 17 6 3.3622 2.9084 5.9789 18 6 4.3740 1.9409 3.8651 19 1 4.7234 1.1735 4.5558 20 7 5.4667 2.8407 3.4877 21 6 6.7512 2.3699 3.4265 22 1 6.9585 1.3351 3.6560 23 6 7.7866 3.2226 3.0694 24 7 9.0211 2.7699 3.0101 25 14 7.4290 5.0141 2.6798 26 1 7.1491 5.1588 1.2287 27 1 6.2477 5.4638 3.4591 28 1 8.6062 5.8439 3.0419 29 6 3.7201 1.3057 2.6127 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 -0.3633 -1.0278 0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 1.6853 1.9532 -0.8954 35 1 1.6677 1.9595 0.8844 36 1 3.1299 1.4427 0.0108 37 1 0.6404 -2.2696 1.6384 38 1 3.5370 -3.6170 2.7826 39 1 4.5333 -4.2172 1.4349 40 1 4.4055 -2.4679 1.7368 41 1 1.7385 1.2161 5.0355 42 1 1.1121 2.4368 3.8947 43 1 4.2850 3.4543 6.1753 44 1 2.5172 3.4667 6.3818 45 1 3.4110 1.9292 6.4551 46 1 5.2804 3.7699 3.2812 47 1 9.7448 3.3658 2.7609 48 1 3.6951 2.0233 1.7925 49 1 4.2621 0.4077 2.3158 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001215840189.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:16:27 Heat of formation + Delta-G solvation = -92.200851 kcal Electronic energy + Delta-G solvation = -30934.482562 eV Core-core repulsion = 26831.248510 eV Total energy + Delta-G solvation = -4103.234052 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.60584 -38.27934 -37.31092 -36.39465 -36.10230 -34.38390 -33.21360 -32.62155 -31.18270 -29.70147 -28.14191 -27.86921 -26.95523 -25.56643 -23.87500 -21.85893 -21.12609 -20.25337 -19.65157 -18.99541 -18.19461 -17.71725 -16.91667 -16.61055 -16.52125 -16.31332 -15.58396 -15.06113 -14.69942 -14.41752 -14.13240 -13.89678 -13.56851 -13.51261 -13.42942 -13.36243 -13.32780 -12.82195 -12.78727 -12.61177 -12.32268 -12.25993 -12.19412 -12.16628 -12.12265 -11.82788 -11.60721 -11.50502 -11.30170 -11.25121 -11.06759 -11.05771 -10.84057 -10.76505 -10.45799 -10.15379 -10.08769 -9.76308 -9.50512 -9.15489 -8.57301 -7.51258 -5.95011 -3.33937 0.03017 2.27894 2.59440 2.99440 3.24890 3.27340 3.34835 3.57863 3.97212 4.24095 4.42626 4.49596 4.52750 4.60766 4.72711 4.77566 4.87150 4.96244 4.98252 5.04453 5.28736 5.39249 5.42452 5.50344 5.51600 5.54200 5.59661 5.63640 5.64612 5.74406 5.81883 5.83403 5.95011 5.98273 6.01586 6.11835 6.18444 6.25772 6.27472 6.28678 6.39580 6.60411 6.74779 7.51253 7.77553 8.07480 8.23179 8.99234 9.71518 9.88891 11.22345 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011706 B = 0.003598 C = 0.003252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2391.279019 B = 7779.965377 C = 8609.239012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.103 4.103 3 C -0.158 4.158 4 C 0.143 3.857 5 H 0.103 0.897 6 N -1.102 6.102 7 S 2.613 3.387 8 C -0.676 4.676 9 O -0.958 6.958 10 O -0.950 6.950 11 C 0.530 3.470 12 O -0.539 6.539 13 N -0.609 5.609 14 C 0.117 3.883 15 C -0.118 4.118 16 H 0.082 0.918 17 C -0.136 4.136 18 C 0.183 3.817 19 H 0.077 0.923 20 N -0.733 5.733 21 C -0.257 4.257 22 H 0.092 0.908 23 C 0.013 3.987 24 N -0.927 5.927 25 Si 0.882 3.118 26 H -0.282 1.282 27 H -0.276 1.276 28 H -0.290 1.290 29 C 0.061 3.939 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.100 0.900 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.067 0.933 37 H 0.426 0.574 38 H 0.131 0.869 39 H 0.131 0.869 40 H 0.131 0.869 41 H 0.069 0.931 42 H 0.063 0.937 43 H 0.067 0.933 44 H 0.050 0.950 45 H 0.055 0.945 46 H 0.365 0.635 47 H 0.262 0.738 48 H 0.079 0.921 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.600 -5.970 -1.722 15.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.124 4.124 3 C -0.216 4.216 4 C 0.032 3.968 5 H 0.120 0.880 6 N -0.862 5.862 7 S 2.705 3.295 8 C -0.826 4.826 9 O -0.949 6.949 10 O -0.940 6.940 11 C 0.316 3.684 12 O -0.417 6.417 13 N -0.342 5.342 14 C -0.006 4.006 15 C -0.138 4.138 16 H 0.101 0.899 17 C -0.193 4.193 18 C 0.070 3.930 19 H 0.095 0.905 20 N -0.374 5.374 21 C -0.386 4.386 22 H 0.110 0.890 23 C -0.184 4.184 24 N -0.573 5.573 25 Si 0.712 3.288 26 H -0.209 1.209 27 H -0.202 1.202 28 H -0.216 1.216 29 C -0.064 4.064 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.118 0.882 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.086 0.914 37 H 0.263 0.737 38 H 0.149 0.851 39 H 0.150 0.850 40 H 0.149 0.851 41 H 0.087 0.913 42 H 0.082 0.918 43 H 0.086 0.914 44 H 0.069 0.931 45 H 0.074 0.926 46 H 0.198 0.802 47 H 0.072 0.928 48 H 0.097 0.903 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -14.983 -6.802 -2.287 16.613 hybrid contribution 0.093 1.513 0.404 1.568 sum -14.890 -5.290 -1.883 15.913 Atomic orbital electron populations 1.21827 0.94195 1.02273 1.02115 1.21541 0.97373 0.96693 0.96759 1.22072 1.01988 0.94985 1.02573 1.20788 0.99109 0.82576 0.94319 0.87962 1.55529 1.31794 1.17997 1.80895 1.04828 0.76041 0.73009 0.75665 1.30555 1.21797 1.12101 1.18108 1.93622 1.65431 1.48685 1.87116 1.93632 1.84057 1.80719 1.35614 1.20107 0.84404 0.79504 0.84367 1.90668 1.22108 1.65438 1.63445 1.48517 1.16570 1.35505 1.33651 1.21982 0.97384 0.92157 0.89070 1.22564 0.94770 0.98895 0.97579 0.89926 1.21675 1.02008 1.01898 0.93733 1.21322 0.86830 0.92582 0.92222 0.90470 1.42641 1.03682 1.08294 1.82759 1.19032 0.81758 0.97150 1.40691 0.89042 1.24670 0.95103 0.97648 1.00962 1.69689 0.98809 1.35251 1.53548 0.86600 0.77321 0.86436 0.78427 1.20875 1.20191 1.21618 1.23710 0.80135 1.00986 1.01582 0.92022 0.92540 0.92335 0.88206 0.91828 0.92145 0.91414 0.73722 0.85054 0.84999 0.85060 0.91304 0.91823 0.91380 0.93084 0.92601 0.80169 0.92797 0.90282 0.90938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 8.67 37.16 0.32 -1.27 16 2 C -0.10 -1.13 2.95 -90.62 -0.27 -1.40 16 3 C -0.16 -1.70 7.53 37.16 0.28 -1.42 16 4 C 0.14 1.59 2.03 -69.09 -0.14 1.45 16 5 H 0.10 0.99 5.45 -51.93 -0.28 0.71 16 6 N -1.10 -11.19 4.58 -5.88 -0.03 -11.22 16 7 S 2.61 25.87 6.02 -107.50 -0.65 25.23 16 8 C -0.68 -5.05 10.78 101.05 1.09 -3.96 16 9 O -0.96 -12.31 18.08 -57.54 -1.04 -13.35 16 10 O -0.95 -12.10 17.14 -57.54 -0.99 -13.08 16 11 C 0.53 6.85 5.31 -10.99 -0.06 6.79 16 12 O -0.54 -8.18 15.45 5.56 0.09 -8.09 16 13 N -0.61 -7.72 2.64 -170.52 -0.45 -8.17 16 14 C 0.12 1.43 6.47 -3.06 -0.02 1.41 16 15 C -0.12 -1.52 3.20 -88.79 -0.28 -1.80 16 16 H 0.08 1.06 8.00 -51.93 -0.42 0.65 16 17 C -0.14 -1.62 9.16 37.16 0.34 -1.28 16 18 C 0.18 2.86 3.16 -65.79 -0.21 2.65 16 19 H 0.08 1.28 8.00 -51.93 -0.42 0.86 16 20 N -0.73 -14.61 5.05 -51.36 -0.26 -14.87 16 21 C -0.26 -6.36 10.44 -15.06 -0.16 -6.52 16 22 H 0.09 2.44 8.06 -52.48 -0.42 2.02 16 23 C 0.01 0.35 5.50 -17.43 -0.10 0.25 16 24 N -0.93 -26.95 13.97 55.49 0.78 -26.18 16 25 Si 0.88 20.13 27.74 -169.99 -4.71 15.41 16 26 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 27 H -0.28 -5.84 6.52 56.52 0.37 -5.47 16 28 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 29 C 0.06 0.84 5.26 -2.53 -0.01 0.82 16 30 H 0.06 0.75 6.60 -51.93 -0.34 0.40 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.62 7.40 -51.92 -0.38 0.23 16 33 H 0.10 1.12 7.45 -51.94 -0.39 0.73 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.69 6.35 -51.93 -0.33 0.36 16 36 H 0.07 0.73 6.85 -51.92 -0.36 0.38 16 37 H 0.43 4.29 7.92 -34.47 -0.27 4.01 16 38 H 0.13 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.13 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.13 0.94 7.44 -51.92 -0.39 0.55 16 41 H 0.07 0.84 7.76 -51.93 -0.40 0.44 16 42 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 44 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.05 0.64 8.06 -51.93 -0.42 0.22 16 46 H 0.36 7.23 5.62 -40.82 -0.23 7.00 16 47 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 48 H 0.08 1.09 6.05 -51.92 -0.31 0.77 16 49 H 0.07 0.94 6.87 -51.93 -0.36 0.59 16 LS Contribution 391.03 15.07 5.89 5.89 Total: -1.00 -33.27 391.03 -8.43 -41.69 By element: Atomic # 1 Polarization: 18.83 SS G_CDS: -7.84 Total: 10.99 kcal Atomic # 6 Polarization: -5.05 SS G_CDS: 0.79 Total: -4.26 kcal Atomic # 7 Polarization: -60.47 SS G_CDS: 0.04 Total: -60.43 kcal Atomic # 8 Polarization: -32.58 SS G_CDS: -1.94 Total: -34.52 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -4.71 Total: 15.41 kcal Atomic # 16 Polarization: 25.87 SS G_CDS: -0.65 Total: 25.23 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.27 -8.43 -41.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001215840189.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.506 kcal (2) G-P(sol) polarization free energy of solvation -33.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds