Wall clock time and date at job start Wed Apr 1 2020 05:16:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46521 * 2 1 4 4 C 1.52999 * 109.47017 * 119.99361 * 2 1 3 5 5 H 1.09006 * 109.46754 * 178.34413 * 4 2 1 6 6 N 1.46494 * 109.47088 * 58.34715 * 4 2 1 7 7 S 1.65604 * 120.00157 * 94.99969 * 6 4 2 8 8 C 1.81400 * 104.45016 * 64.99854 * 7 6 4 9 9 O 1.42102 * 104.27816 * 181.07254 * 7 6 4 10 10 O 1.42098 * 104.27407 * 308.92565 * 7 6 4 11 11 C 1.50700 * 109.47376 * 298.34439 * 4 2 1 12 12 O 1.21278 * 119.99984 * 87.83849 * 11 4 2 13 13 N 1.34773 * 120.00051 * 267.83734 * 11 4 2 14 14 C 1.47029 * 125.65208 * 174.75177 * 13 11 4 15 15 C 1.54316 * 107.27358 * 178.96077 * 14 13 11 16 16 H 1.09002 * 110.87476 * 96.24374 * 15 14 13 17 17 C 1.52997 * 110.71710 * 219.43928 * 15 14 13 18 18 C 1.55154 * 102.94493 * 337.80383 * 15 14 13 19 19 H 1.09000 * 111.00501 * 277.39196 * 18 15 14 20 20 N 1.46494 * 111.00685 * 153.57773 * 18 15 14 21 21 C 1.36943 * 120.00213 * 154.99757 * 20 18 15 22 22 H 1.08004 * 119.99463 * 0.02562 * 21 20 18 23 23 C 1.38807 * 119.99877 * 180.02562 * 21 20 18 24 24 N 1.31619 * 119.99737 * 180.02562 * 23 21 20 25 25 Si 1.86796 * 120.00235 * 0.27488 * 23 21 20 26 26 H 1.48496 * 109.47429 * 269.72423 * 25 23 21 27 27 H 1.48497 * 109.46893 * 29.72810 * 25 23 21 28 28 H 1.48502 * 109.46910 * 149.72699 * 25 23 21 29 29 C 1.47429 * 125.65191 * 354.76768 * 13 11 4 30 30 H 1.09002 * 109.47495 * 300.00153 * 1 2 3 31 31 H 1.09000 * 109.47281 * 60.00568 * 1 2 3 32 32 H 1.09009 * 109.46761 * 180.02562 * 1 2 3 33 33 H 1.08988 * 109.47233 * 239.99798 * 2 1 3 34 34 H 1.09005 * 109.47074 * 299.39598 * 3 2 1 35 35 H 1.08994 * 109.47583 * 59.39337 * 3 2 1 36 36 H 1.09007 * 109.47097 * 179.39869 * 3 2 1 37 37 H 0.96998 * 120.00185 * 274.99452 * 6 4 2 38 38 H 1.08996 * 109.46950 * 60.00156 * 8 7 6 39 39 H 1.08997 * 109.46813 * 180.02562 * 8 7 6 40 40 H 1.09005 * 109.46732 * 299.99956 * 8 7 6 41 41 H 1.08995 * 109.87983 * 59.53615 * 14 13 11 42 42 H 1.09005 * 110.00621 * 298.44865 * 14 13 11 43 43 H 1.09001 * 109.47200 * 173.52145 * 17 15 14 44 44 H 1.08999 * 109.47664 * 293.51854 * 17 15 14 45 45 H 1.09000 * 109.47190 * 53.52187 * 17 15 14 46 46 H 0.96999 * 119.99790 * 335.00305 * 20 18 15 47 47 H 0.96999 * 120.00433 * 180.02562 * 24 23 21 48 48 H 1.09009 * 110.36134 * 85.26967 * 29 13 11 49 49 H 1.09005 * 110.36604 * 322.95375 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 1 3.1296 -0.7469 1.2346 6 7 1.5194 -2.0903 1.2695 7 16 2.4317 -3.3321 0.6627 8 6 3.8704 -3.4171 1.7643 9 8 1.6113 -4.4811 0.8243 10 8 2.8184 -2.8839 -0.6291 11 6 1.5715 0.0127 2.4794 12 8 0.4937 -0.2509 2.9690 13 7 2.3502 0.9619 3.0354 14 6 1.9742 1.8263 4.1637 15 6 3.1847 2.7332 4.4694 16 1 3.0779 3.7014 3.9802 17 6 3.3622 2.9084 5.9789 18 6 4.3740 1.9409 3.8651 19 1 4.7234 1.1735 4.5558 20 7 5.4667 2.8407 3.4877 21 6 6.7512 2.3699 3.4265 22 1 6.9585 1.3351 3.6560 23 6 7.7866 3.2226 3.0694 24 7 9.0211 2.7699 3.0101 25 14 7.4290 5.0141 2.6798 26 1 7.1491 5.1588 1.2287 27 1 6.2477 5.4638 3.4591 28 1 8.6062 5.8439 3.0419 29 6 3.7201 1.3057 2.6127 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 -0.3633 -1.0278 0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 1.6853 1.9532 -0.8954 35 1 1.6677 1.9595 0.8844 36 1 3.1299 1.4427 0.0108 37 1 0.6404 -2.2696 1.6384 38 1 3.5370 -3.6170 2.7826 39 1 4.5333 -4.2172 1.4349 40 1 4.4055 -2.4679 1.7368 41 1 1.7385 1.2161 5.0355 42 1 1.1121 2.4368 3.8947 43 1 4.2850 3.4543 6.1753 44 1 2.5172 3.4667 6.3818 45 1 3.4110 1.9292 6.4551 46 1 5.2804 3.7699 3.2812 47 1 9.7448 3.3658 2.7609 48 1 3.6951 2.0233 1.7925 49 1 4.2621 0.4077 2.3158 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001215840189.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:16:26 Heat of formation + Delta-G solvation = -117.574294 kcal Electronic energy + Delta-G solvation = -30935.582837 eV Core-core repulsion = 26831.248510 eV Total energy + Delta-G solvation = -4104.334327 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.64153 -39.39239 -38.23530 -37.36472 -37.01982 -35.95674 -34.16998 -33.79586 -32.84863 -30.35089 -29.48063 -28.80942 -27.84450 -26.52362 -25.49937 -23.06714 -22.23238 -21.45598 -20.51150 -19.92891 -19.49054 -19.08772 -17.85088 -17.66944 -17.56027 -17.20577 -16.56924 -16.35951 -15.94708 -15.59940 -15.19437 -14.99540 -14.81813 -14.60855 -14.50283 -14.34792 -14.13056 -14.02904 -13.84517 -13.60233 -13.32177 -13.25634 -13.19437 -13.16957 -13.10798 -13.00034 -12.92203 -12.70520 -12.49041 -12.22428 -12.12111 -12.05494 -11.99089 -11.88218 -11.85290 -11.77194 -11.38065 -11.07232 -10.88168 -10.43173 -9.68293 -9.27961 -7.97116 -5.31896 -0.75778 1.37311 1.44823 1.46703 1.54052 1.63196 2.00415 2.53665 2.79526 3.18461 3.22225 3.33484 3.55942 3.67916 3.73644 3.76095 3.89305 3.93312 4.05454 4.10625 4.16779 4.20212 4.37783 4.43753 4.57708 4.59989 4.65819 4.73558 4.79103 4.87736 4.92243 4.93253 4.96102 4.97653 5.10949 5.11947 5.17445 5.22417 5.34167 5.39006 5.39662 5.48200 5.83086 5.91797 6.25966 6.45764 7.03718 7.12424 7.86239 8.04504 9.23572 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011706 B = 0.003598 C = 0.003252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2391.279019 B = 7779.965377 C = 8609.239012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.104 4.104 3 C -0.156 4.156 4 C 0.140 3.860 5 H 0.117 0.883 6 N -1.101 6.101 7 S 2.626 3.374 8 C -0.665 4.665 9 O -0.990 6.990 10 O -0.981 6.981 11 C 0.533 3.467 12 O -0.560 6.560 13 N -0.606 5.606 14 C 0.119 3.881 15 C -0.107 4.107 16 H 0.089 0.911 17 C -0.133 4.133 18 C 0.173 3.827 19 H 0.067 0.933 20 N -0.734 5.734 21 C -0.227 4.227 22 H 0.064 0.936 23 C -0.056 4.056 24 N -0.981 5.981 25 Si 0.945 3.055 26 H -0.279 1.279 27 H -0.247 1.247 28 H -0.305 1.305 29 C 0.070 3.930 30 H 0.048 0.952 31 H 0.067 0.933 32 H 0.056 0.944 33 H 0.098 0.902 34 H 0.072 0.928 35 H 0.054 0.946 36 H 0.066 0.934 37 H 0.426 0.574 38 H 0.146 0.854 39 H 0.150 0.850 40 H 0.139 0.861 41 H 0.072 0.928 42 H 0.074 0.926 43 H 0.050 0.950 44 H 0.073 0.927 45 H 0.057 0.943 46 H 0.369 0.631 47 H 0.256 0.744 48 H 0.083 0.917 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.127 -5.213 -1.503 17.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.124 4.124 3 C -0.214 4.214 4 C 0.029 3.971 5 H 0.134 0.866 6 N -0.860 5.860 7 S 2.721 3.279 8 C -0.818 4.818 9 O -0.980 6.980 10 O -0.971 6.971 11 C 0.321 3.679 12 O -0.439 6.439 13 N -0.339 5.339 14 C -0.004 4.004 15 C -0.127 4.127 16 H 0.108 0.892 17 C -0.191 4.191 18 C 0.063 3.937 19 H 0.085 0.915 20 N -0.376 5.376 21 C -0.358 4.358 22 H 0.082 0.918 23 C -0.248 4.248 24 N -0.631 5.631 25 Si 0.773 3.227 26 H -0.205 1.205 27 H -0.172 1.172 28 H -0.233 1.233 29 C -0.056 4.056 30 H 0.067 0.933 31 H 0.086 0.914 32 H 0.075 0.925 33 H 0.116 0.884 34 H 0.091 0.909 35 H 0.073 0.927 36 H 0.085 0.915 37 H 0.263 0.737 38 H 0.165 0.835 39 H 0.169 0.831 40 H 0.158 0.842 41 H 0.090 0.910 42 H 0.092 0.908 43 H 0.069 0.931 44 H 0.092 0.908 45 H 0.076 0.924 46 H 0.203 0.797 47 H 0.065 0.935 48 H 0.101 0.899 49 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -16.616 -6.051 -2.073 17.804 hybrid contribution 0.518 1.166 0.412 1.341 sum -16.097 -4.884 -1.661 16.904 Atomic orbital electron populations 1.21793 0.94149 1.02162 1.01993 1.21557 0.97416 0.96915 0.96536 1.22052 1.01839 0.94714 1.02785 1.20869 0.99968 0.82729 0.93524 0.86560 1.55424 1.32070 1.17691 1.80837 1.04284 0.76205 0.72034 0.75357 1.30452 1.20093 1.13411 1.17827 1.93578 1.67004 1.49874 1.87576 1.93590 1.84503 1.80979 1.38059 1.20325 0.83956 0.79172 0.84493 1.90663 1.23032 1.66029 1.64199 1.48469 1.16075 1.35566 1.33769 1.22006 0.97257 0.92079 0.89029 1.22483 0.93284 0.98840 0.98045 0.89243 1.21657 1.02071 1.02184 0.93158 1.21486 0.86741 0.92390 0.93109 0.91523 1.42554 1.02943 1.09085 1.83033 1.18994 0.83650 0.95754 1.37384 0.91794 1.25384 0.94904 1.02006 1.02469 1.69863 1.00003 1.36675 1.56605 0.85570 0.77438 0.81176 0.78547 1.20526 1.17168 1.23260 1.23456 0.80505 1.01276 1.00337 0.93276 0.91449 0.92487 0.88360 0.90857 0.92734 0.91538 0.73701 0.83548 0.83139 0.84238 0.91011 0.90814 0.93130 0.90821 0.92372 0.79728 0.93514 0.89861 0.90322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 8.67 71.98 0.62 -2.31 16 2 C -0.10 -2.12 2.95 -10.79 -0.03 -2.15 16 3 C -0.16 -3.04 7.53 71.98 0.54 -2.49 16 4 C 0.14 2.89 2.03 44.25 0.09 2.98 16 5 H 0.12 2.02 5.45 -2.38 -0.01 2.01 16 6 N -1.10 -21.12 4.58 -172.53 -0.79 -21.91 16 7 S 2.63 49.43 6.02 -56.49 -0.34 49.09 16 8 C -0.66 -8.38 10.78 113.37 1.22 -7.15 16 9 O -0.99 -24.96 18.08 -127.65 -2.31 -27.27 16 10 O -0.98 -24.30 17.14 -127.65 -2.19 -26.48 16 11 C 0.53 12.79 5.31 87.66 0.47 13.26 16 12 O -0.56 -16.10 15.45 -3.02 -0.05 -16.14 16 13 N -0.61 -13.98 2.64 -811.78 -2.14 -16.12 16 14 C 0.12 2.58 6.47 86.73 0.56 3.14 16 15 C -0.11 -2.45 3.20 -9.61 -0.03 -2.48 16 16 H 0.09 1.99 8.00 -2.39 -0.02 1.97 16 17 C -0.13 -2.85 9.16 71.98 0.66 -2.19 16 18 C 0.17 5.09 3.16 46.38 0.15 5.24 16 19 H 0.07 2.12 8.00 -2.39 -0.02 2.10 16 20 N -0.73 -28.02 5.05 -316.39 -1.60 -29.62 16 21 C -0.23 -11.18 10.44 84.03 0.88 -10.30 16 22 H 0.06 3.46 8.06 -2.91 -0.02 3.44 16 23 C -0.06 -2.97 5.50 84.86 0.47 -2.50 16 24 N -0.98 -58.43 13.97 21.65 0.30 -58.13 16 25 Si 0.94 41.09 27.74 68.60 1.90 42.99 16 26 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 27 H -0.25 -9.44 6.52 99.48 0.65 -8.79 16 28 H -0.31 -13.98 7.11 99.48 0.71 -13.28 16 29 C 0.07 1.74 5.26 86.85 0.46 2.20 16 30 H 0.05 1.13 6.60 -2.39 -0.02 1.11 16 31 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.06 1.16 7.40 -2.38 -0.02 1.14 16 33 H 0.10 2.08 7.45 -2.39 -0.02 2.06 16 34 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 35 H 0.05 1.12 6.35 -2.39 -0.02 1.11 16 36 H 0.07 1.30 6.85 -2.38 -0.02 1.29 16 37 H 0.43 8.27 7.92 -96.75 -0.77 7.50 16 38 H 0.15 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.15 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.14 1.62 7.44 -2.39 -0.02 1.60 16 41 H 0.07 1.55 7.76 -2.39 -0.02 1.53 16 42 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 43 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 45 H 0.06 1.21 8.06 -2.39 -0.02 1.19 16 46 H 0.37 13.62 5.62 -92.71 -0.52 13.10 16 47 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 48 H 0.08 2.08 6.05 -2.38 -0.01 2.06 16 49 H 0.08 1.88 6.87 -2.38 -0.02 1.86 16 Total: -1.00 -71.77 391.03 -1.53 -73.31 By element: Atomic # 1 Polarization: 35.43 SS G_CDS: -0.38 Total: 35.06 kcal Atomic # 6 Polarization: -10.82 SS G_CDS: 6.05 Total: -4.77 kcal Atomic # 7 Polarization: -121.55 SS G_CDS: -4.23 Total: -125.78 kcal Atomic # 8 Polarization: -65.35 SS G_CDS: -4.54 Total: -69.89 kcal Atomic # 14 Polarization: 41.09 SS G_CDS: 1.90 Total: 42.99 kcal Atomic # 16 Polarization: 49.43 SS G_CDS: -0.34 Total: 49.09 kcal Total: -71.77 -1.53 -73.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001215840189.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.269 kcal (2) G-P(sol) polarization free energy of solvation -71.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds