Wall clock time and date at job start Wed Apr 1 2020 05:25:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47059 * 2 1 4 4 C 1.52999 * 109.47245 * 119.99554 * 2 1 3 5 5 C 1.53001 * 109.47398 * 185.00070 * 4 2 1 6 6 S 1.81401 * 109.47291 * 180.02562 * 5 4 2 7 7 C 1.81397 * 101.91957 * 180.02562 * 6 5 4 8 8 O 1.42101 * 108.57435 * 294.48872 * 6 5 4 9 9 O 1.42098 * 108.57569 * 65.51316 * 6 5 4 10 10 N 1.46493 * 109.47381 * 240.00021 * 2 1 3 11 11 C 1.34776 * 120.00402 * 84.99777 * 10 2 1 12 12 O 1.21586 * 119.99736 * 0.02562 * 11 10 2 13 13 N 1.34772 * 120.00306 * 180.02562 * 11 10 2 14 14 C 1.46502 * 120.00038 * 179.97438 * 13 11 10 15 15 C 1.53042 * 109.45937 * 275.02508 * 14 13 11 16 16 C 1.53198 * 109.30984 * 178.59992 * 15 14 13 17 17 N 1.46926 * 108.76248 * 54.65637 * 16 15 14 18 18 C 1.36943 * 120.63113 * 126.36178 * 17 16 15 19 19 H 1.07994 * 119.99706 * 331.86355 * 18 17 16 20 20 C 1.38810 * 120.00044 * 151.85901 * 18 17 16 21 21 N 1.31615 * 120.00222 * 343.06360 * 20 18 17 22 22 Si 1.86800 * 119.99722 * 163.06258 * 20 18 17 23 23 H 1.48501 * 109.47313 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.46934 * 120.00290 * 22 20 18 25 25 H 1.48494 * 109.47228 * 239.99816 * 22 20 18 26 26 C 1.46921 * 118.74102 * 306.38086 * 17 16 15 27 27 C 1.53044 * 109.45981 * 154.96705 * 14 13 11 28 28 H 1.09002 * 109.46951 * 300.00170 * 1 2 3 29 29 H 1.08997 * 109.47392 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46983 * 59.99691 * 1 2 3 31 31 H 1.08996 * 109.47064 * 305.00346 * 4 2 1 32 32 H 1.09001 * 109.46787 * 65.00328 * 4 2 1 33 33 H 1.08997 * 109.46747 * 300.00346 * 5 4 2 34 34 H 1.09001 * 109.46941 * 60.00352 * 5 4 2 35 35 H 1.09000 * 109.47456 * 59.99912 * 7 6 5 36 36 H 1.09000 * 109.46943 * 180.02562 * 7 6 5 37 37 H 1.09002 * 109.47371 * 299.99752 * 7 6 5 38 38 H 0.97006 * 120.00004 * 265.00081 * 10 2 1 39 39 H 0.96999 * 120.00462 * 359.97438 * 13 11 10 40 40 H 1.09001 * 109.46055 * 35.00268 * 14 13 11 41 41 H 1.08996 * 109.49518 * 298.56433 * 15 14 13 42 42 H 1.08998 * 109.49626 * 58.66563 * 15 14 13 43 43 H 1.09000 * 109.60064 * 294.86989 * 16 15 14 44 44 H 1.08993 * 109.70258 * 174.50288 * 16 15 14 45 45 H 0.96995 * 120.00015 * 179.97438 * 21 20 18 46 46 H 1.09004 * 109.58922 * 293.82246 * 26 17 16 47 47 H 1.09003 * 109.70712 * 173.47010 * 26 17 16 48 48 H 1.08992 * 109.50180 * 301.33872 * 27 14 13 49 49 H 1.09002 * 109.49232 * 61.43490 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5649 -0.6132 1.3138 6 16 4.1696 -1.4688 2.7946 7 6 5.9614 -1.2160 2.6679 8 8 3.6953 -0.7778 3.9421 9 8 3.8969 -2.8568 2.6585 10 7 2.0184 -0.6906 -1.1961 11 6 2.1471 -0.0183 -2.3571 12 8 1.8583 1.1615 -2.4116 13 7 2.5959 -0.6537 -3.4576 14 6 2.7353 0.0769 -4.7197 15 6 1.3919 0.0892 -5.4528 16 6 1.5327 0.8837 -6.7550 17 7 2.6410 0.3182 -7.5363 18 6 2.4519 -0.0701 -8.8358 19 1 1.4768 -0.3973 -9.1651 20 6 3.5134 -0.0430 -9.7298 21 7 4.5949 0.6514 -9.4465 22 14 3.4068 -0.9922 -11.3352 23 1 2.0960 -1.6855 -11.4143 24 1 3.5382 -0.0511 -12.4763 25 1 4.5014 -1.9941 -11.3914 26 6 3.9561 0.1766 -6.8967 27 6 3.7883 -0.6096 -5.5927 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 -0.8900 31 1 1.6054 -0.2616 2.1369 32 1 1.7517 -1.7714 1.2056 33 1 3.9994 -1.0727 0.4260 34 1 3.8532 0.4371 1.3574 35 1 6.1789 -0.1480 2.6723 36 1 6.4561 -1.6915 3.5148 37 1 6.3259 -1.6572 1.7402 38 1 2.2491 -1.6318 -1.1525 39 1 2.8267 -1.5949 -3.4141 40 1 3.0461 1.1012 -4.5139 41 1 1.0927 -0.9338 -5.6810 42 1 0.6370 0.5573 -4.8211 43 1 1.7433 1.9282 -6.5252 44 1 0.6087 0.8151 -7.3291 45 1 5.3368 0.6700 -10.0710 46 1 4.3644 1.1634 -6.6784 47 1 4.6327 -0.3596 -7.5622 48 1 4.7391 -0.6390 -5.0607 49 1 3.4662 -1.6259 -5.8196 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001253014937.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:32 Heat of formation + Delta-G solvation = -87.430793 kcal Electronic energy + Delta-G solvation = -28924.026974 eV Core-core repulsion = 24820.999767 eV Total energy + Delta-G solvation = -4103.027207 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.93 seconds Orbital eigenvalues (eV) -40.16222 -37.87572 -37.43701 -36.64508 -36.41713 -34.36021 -32.92994 -31.94576 -30.56647 -30.08398 -29.87742 -29.03731 -25.15029 -24.66977 -22.54217 -22.16350 -21.23949 -20.62962 -19.47518 -19.32882 -18.23776 -17.24106 -16.77043 -16.74494 -16.48547 -16.29717 -15.23804 -15.11676 -14.75106 -14.57361 -14.23263 -13.99016 -13.78919 -13.70978 -13.64229 -13.55048 -13.30938 -13.01661 -12.66455 -12.54572 -12.51373 -12.44924 -12.29372 -12.20357 -11.97437 -11.58565 -11.46710 -11.37870 -11.13818 -10.85886 -10.77985 -10.74628 -10.49119 -10.27871 -10.06227 -10.02209 -9.76484 -9.54962 -9.24568 -8.63315 -8.45917 -6.69837 -5.81301 -3.23355 -0.52284 2.23077 2.73437 3.10829 3.32928 3.35335 3.43572 3.45798 3.50961 4.00573 4.14836 4.26511 4.28933 4.39087 4.48069 4.49507 4.92592 4.98034 5.08711 5.14621 5.21839 5.32086 5.37169 5.40102 5.48808 5.49622 5.60084 5.74766 5.88322 6.02468 6.07302 6.27795 6.34239 6.41986 6.48407 6.56637 6.59400 6.79669 6.88381 6.97714 7.09069 7.30115 7.59953 7.78346 8.11718 8.43058 8.72759 9.19299 9.82495 10.39512 11.27687 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.020390 B = 0.001959 C = 0.001852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.923403 B =14292.271847 C =15112.903080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.169 3.831 3 H 0.093 0.907 4 C -0.119 4.119 5 C -0.610 4.610 6 S 2.420 3.580 7 C -0.657 4.657 8 O -0.940 6.940 9 O -0.940 6.940 10 N -0.750 5.750 11 C 0.702 3.298 12 O -0.589 6.589 13 N -0.740 5.740 14 C 0.169 3.831 15 C -0.139 4.139 16 C 0.147 3.853 17 N -0.593 5.593 18 C -0.250 4.250 19 H 0.066 0.934 20 C 0.001 3.999 21 N -0.903 5.903 22 Si 0.902 3.098 23 H -0.278 1.278 24 H -0.290 1.290 25 H -0.289 1.289 26 C 0.175 3.825 27 C -0.146 4.146 28 H 0.066 0.934 29 H 0.057 0.943 30 H 0.067 0.933 31 H 0.097 0.903 32 H 0.086 0.914 33 H 0.134 0.866 34 H 0.137 0.863 35 H 0.129 0.871 36 H 0.129 0.871 37 H 0.129 0.871 38 H 0.393 0.607 39 H 0.391 0.609 40 H 0.081 0.919 41 H 0.056 0.944 42 H 0.054 0.946 43 H 0.020 0.980 44 H 0.055 0.945 45 H 0.253 0.747 46 H 0.021 0.979 47 H 0.091 0.909 48 H 0.053 0.947 49 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.234 -5.186 25.175 25.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.063 3.937 3 H 0.111 0.889 4 C -0.158 4.158 5 C -0.740 4.740 6 S 2.602 3.398 7 C -0.807 4.807 8 O -0.937 6.937 9 O -0.937 6.937 10 N -0.406 5.406 11 C 0.402 3.598 12 O -0.467 6.467 13 N -0.393 5.393 14 C 0.065 3.935 15 C -0.179 4.179 16 C 0.020 3.980 17 N -0.316 5.316 18 C -0.380 4.380 19 H 0.084 0.916 20 C -0.197 4.197 21 N -0.548 5.548 22 Si 0.732 3.268 23 H -0.203 1.203 24 H -0.217 1.217 25 H -0.216 1.216 26 C 0.048 3.952 27 C -0.186 4.186 28 H 0.084 0.916 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.115 0.885 32 H 0.105 0.895 33 H 0.152 0.848 34 H 0.155 0.845 35 H 0.148 0.852 36 H 0.148 0.852 37 H 0.148 0.852 38 H 0.227 0.773 39 H 0.223 0.777 40 H 0.099 0.901 41 H 0.075 0.925 42 H 0.073 0.927 43 H 0.038 0.962 44 H 0.074 0.926 45 H 0.063 0.937 46 H 0.039 0.961 47 H 0.109 0.891 48 H 0.071 0.929 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.349 -4.491 25.654 26.046 hybrid contribution 0.857 -0.957 -1.448 1.936 sum 0.508 -5.448 24.206 24.817 Atomic orbital electron populations 1.22232 0.94994 1.02352 1.03029 1.20662 0.93956 0.97189 0.81912 0.88869 1.21683 0.90562 1.03285 1.00271 1.30357 1.06912 1.15413 1.21270 1.07852 0.78414 0.76091 0.77410 1.30273 1.26318 1.12089 1.11980 1.93607 1.78613 1.75664 1.45861 1.93610 1.83343 1.30037 1.86705 1.45289 1.72695 1.13465 1.09193 1.16027 0.78380 0.85225 0.80213 1.90921 1.56848 1.14374 1.84581 1.45576 1.70514 1.13623 1.09604 1.20908 0.96193 0.96095 0.80295 1.22384 0.96316 1.01148 0.98077 1.20880 0.92363 0.94226 0.90490 1.44103 1.06018 1.71648 1.09812 1.19234 0.96604 1.36723 0.85443 0.91605 1.25055 0.97963 0.99090 0.97638 1.70032 1.07062 1.40909 1.36803 0.86228 0.77516 0.79558 0.83519 1.20263 1.21727 1.21584 1.20735 0.88428 0.96585 0.89461 1.22542 0.96512 1.00728 0.98814 0.91554 0.92372 0.91359 0.88462 0.89528 0.84807 0.84516 0.85235 0.85245 0.85220 0.77345 0.77653 0.90109 0.92485 0.92730 0.96181 0.92601 0.93663 0.96129 0.89051 0.92858 0.92240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.40 9.48 37.16 0.35 -1.05 16 2 C 0.17 1.40 2.57 -67.93 -0.17 1.23 16 3 H 0.09 0.92 7.58 -51.93 -0.39 0.53 16 4 C -0.12 -0.67 4.76 -26.73 -0.13 -0.80 16 5 C -0.61 -2.50 5.69 37.16 0.21 -2.29 16 6 S 2.42 12.37 5.36 -107.50 -0.58 11.79 16 7 C -0.66 -1.68 10.62 101.05 1.07 -0.60 16 8 O -0.94 -8.38 18.10 -57.83 -1.05 -9.43 16 9 O -0.94 -8.35 18.10 -57.83 -1.05 -9.39 16 10 N -0.75 -6.88 4.53 -58.68 -0.27 -7.15 16 11 C 0.70 9.62 8.50 -86.92 -0.74 8.88 16 12 O -0.59 -10.63 15.67 5.29 0.08 -10.55 16 13 N -0.74 -9.79 5.08 -58.63 -0.30 -10.09 16 14 C 0.17 2.86 2.42 -67.89 -0.16 2.70 16 15 C -0.14 -2.52 5.65 -26.61 -0.15 -2.67 16 16 C 0.15 3.16 6.52 -3.71 -0.02 3.13 16 17 N -0.59 -14.68 2.99 -172.32 -0.52 -15.19 16 18 C -0.25 -6.79 9.58 -15.06 -0.14 -6.93 16 19 H 0.07 1.76 7.88 -52.49 -0.41 1.35 16 20 C 0.00 0.03 4.92 -17.43 -0.09 -0.06 16 21 N -0.90 -25.85 11.19 55.49 0.62 -25.22 16 22 Si 0.90 21.38 29.59 -169.99 -5.03 16.35 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 26 C 0.17 4.03 5.30 -3.71 -0.02 4.01 16 27 C -0.15 -2.59 5.55 -26.61 -0.15 -2.73 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.13 0.40 7.75 -51.92 -0.40 0.00 16 34 H 0.14 0.38 8.14 -51.92 -0.42 -0.04 16 35 H 0.13 0.15 8.14 -51.92 -0.42 -0.28 16 36 H 0.13 0.29 8.14 -51.92 -0.42 -0.13 16 37 H 0.13 0.16 8.14 -51.92 -0.42 -0.26 16 38 H 0.39 2.54 8.62 -40.82 -0.35 2.19 16 39 H 0.39 4.04 8.62 -40.82 -0.35 3.69 16 40 H 0.08 1.56 7.58 -51.93 -0.39 1.17 16 41 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 44 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 45 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 46 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 47 H 0.09 2.35 6.06 -51.93 -0.31 2.03 16 48 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 49 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 405.95 15.07 6.12 6.12 Total: -1.00 -38.03 405.95 -10.61 -48.63 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -8.51 Total: 1.32 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: -0.14 Total: 2.81 kcal Atomic # 7 Polarization: -57.19 SS G_CDS: -0.46 Total: -57.65 kcal Atomic # 8 Polarization: -27.36 SS G_CDS: -2.01 Total: -29.37 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.03 Total: 16.35 kcal Atomic # 16 Polarization: 12.37 SS G_CDS: -0.58 Total: 11.79 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -38.03 -10.61 -48.63 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001253014937.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.798 kcal (2) G-P(sol) polarization free energy of solvation -38.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.93 seconds